Wall clock time and date at job start Tue Mar 31 2020 17:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00182 * 2 1 4 4 C 1.53008 * 109.47341 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.46797 * 65.00180 * 4 3 2 6 6 C 1.36946 * 119.99857 * 264.24906 * 5 4 3 7 7 H 1.07998 * 119.99847 * 133.31419 * 6 5 4 8 8 C 1.38974 * 120.00160 * 313.32052 * 6 5 4 9 9 N 1.31414 * 120.00202 * 2.17315 * 8 6 5 10 10 Si 1.86806 * 120.00187 * 182.17900 * 8 6 5 11 11 H 1.48501 * 109.46996 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47413 * 119.99848 * 10 8 6 13 13 H 1.48496 * 109.47061 * 239.99905 * 10 8 6 14 14 C 1.34778 * 120.00241 * 84.25433 * 5 4 3 15 15 O 1.21657 * 119.99658 * 5.24531 * 14 5 4 16 16 C 1.47251 * 119.99988 * 185.24619 * 14 5 4 17 17 C 1.36408 * 122.56368 * 174.48133 * 16 14 5 18 18 S 1.71014 * 108.98098 * 179.77089 * 17 16 14 19 19 C 1.75970 * 90.63156 * 0.31494 * 18 17 16 20 20 C 1.47913 * 125.21748 * 179.97438 * 19 18 17 21 21 C 1.39483 * 119.74053 * 359.69166 * 20 19 18 22 22 C 1.38384 * 119.05304 * 179.97438 * 21 20 19 23 23 C 1.38793 * 118.52164 * 0.02562 * 22 21 20 24 24 C 1.38308 * 119.39059 * 0.27326 * 23 22 21 25 25 N 1.31705 * 120.91140 * 359.42948 * 24 23 22 26 26 N 1.29780 * 109.56172 * 359.68040 * 19 18 17 27 27 H 1.09002 * 109.46684 * 299.99814 * 1 2 3 28 28 H 1.08996 * 109.47601 * 59.99423 * 1 2 3 29 29 H 1.09002 * 109.47247 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47183 * 60.00237 * 3 2 1 31 31 H 1.09001 * 109.47646 * 300.00292 * 3 2 1 32 32 H 1.08998 * 109.46717 * 304.99962 * 4 3 2 33 33 H 1.08999 * 109.46759 * 185.00521 * 4 3 2 34 34 H 0.97004 * 119.99894 * 179.97438 * 9 8 6 35 35 H 1.08004 * 125.50685 * 0.02562 * 17 16 14 36 36 H 1.08004 * 120.47386 * 0.02562 * 21 20 19 37 37 H 1.08009 * 120.73913 * 180.02562 * 22 21 20 38 38 H 1.08006 * 120.30242 * 180.02562 * 23 22 21 39 39 H 1.08000 * 119.53929 * 179.69885 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2101 -0.7838 -1.3036 7 1 3.8129 -1.3707 -2.1186 8 6 4.9592 -1.3970 -0.3064 9 7 5.4064 -0.6909 0.7077 10 14 5.3306 -3.2250 -0.4076 11 1 4.7177 -3.7872 -1.6378 12 1 6.8008 -3.4300 -0.4482 13 1 4.7678 -3.9110 0.7832 14 6 4.1499 1.3208 -2.3546 15 8 4.0347 2.5300 -2.2868 16 6 4.4796 0.6835 -3.6405 17 6 4.5592 1.3842 -4.8081 18 16 4.9674 0.3100 -6.0747 19 6 4.9985 -1.0398 -4.9461 20 6 5.3014 -2.4430 -5.3027 21 6 5.5854 -2.7744 -6.6275 22 6 5.8673 -4.0914 -6.9451 23 6 5.8556 -5.0356 -5.9279 24 6 5.5594 -4.6384 -4.6366 25 7 5.3001 -3.3773 -4.3593 26 7 4.7212 -0.6141 -3.7519 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1765 0.0890 34 1 5.9289 -1.1190 1.4038 35 1 4.3953 2.4464 -4.9147 36 1 5.5862 -2.0138 -7.3943 37 1 6.0913 -4.3783 -7.9621 38 1 6.0718 -6.0716 -6.1434 39 1 5.5449 -5.3720 -3.8440 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001450854748.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:41 Heat of formation + Delta-G solvation = 7.172295 kcal Electronic energy + Delta-G solvation = -26348.704973 eV Core-core repulsion = 22576.793508 eV Total energy + Delta-G solvation = -3771.911465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.093 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42039 -40.83934 -39.44822 -38.43653 -36.63812 -33.57294 -33.42788 -33.20089 -31.14551 -30.44708 -27.40899 -26.97115 -26.45905 -25.11545 -24.41133 -23.15959 -21.77660 -20.58968 -19.77995 -18.54624 -17.97418 -17.32351 -17.18748 -17.05389 -16.72443 -16.59165 -16.27746 -16.07155 -15.93935 -15.67032 -15.24991 -14.96751 -14.55442 -14.23651 -14.18006 -13.94339 -13.51722 -13.34392 -13.07328 -13.05170 -12.78237 -12.76850 -12.48741 -12.41214 -11.88539 -11.80649 -11.06485 -11.02502 -10.80319 -10.76106 -10.52856 -10.28159 -10.27647 -10.15793 -9.41212 -9.16492 -8.12135 -5.91063 -0.80002 0.21918 0.24111 0.43708 0.57848 1.32684 1.46098 1.52503 1.74124 2.44628 2.58966 2.81169 2.98693 2.99452 3.08947 3.27329 3.61711 3.98283 4.07496 4.15448 4.19520 4.22815 4.23448 4.31135 4.43650 4.50660 4.55820 4.60746 4.65013 4.74277 4.78676 4.81776 4.99045 5.21327 5.24201 5.43982 5.76292 5.81406 6.07665 6.39932 6.62837 6.76187 7.14058 7.28012 7.56537 7.97061 8.89017 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.011039 B = 0.005292 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.775174 B = 5289.762306 C = 6690.155723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.066 3.934 4 C 0.104 3.896 5 N -0.420 5.420 6 C -0.274 4.274 7 H 0.105 0.895 8 C -0.005 4.005 9 N -0.917 5.917 10 Si 0.972 3.028 11 H -0.233 1.233 12 H -0.295 1.295 13 H -0.290 1.290 14 C 0.514 3.486 15 O -0.630 6.630 16 C 0.011 3.989 17 C -0.234 4.234 18 S 0.263 5.737 19 C 0.039 3.961 20 C 0.167 3.833 21 C -0.149 4.149 22 C -0.063 4.063 23 C -0.150 4.150 24 C 0.080 3.920 25 N -0.492 5.492 26 N -0.392 5.392 27 H 0.054 0.946 28 H 0.037 0.963 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.029 0.971 32 H 0.110 0.890 33 H 0.057 0.943 34 H 0.263 0.737 35 H 0.196 0.804 36 H 0.160 0.840 37 H 0.186 0.814 38 H 0.177 0.823 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.648 -7.650 -17.249 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.012 4.012 4 C -0.019 4.019 5 N -0.135 5.135 6 C -0.403 4.403 7 H 0.123 0.877 8 C -0.203 4.203 9 N -0.559 5.559 10 Si 0.798 3.202 11 H -0.156 1.156 12 H -0.222 1.222 13 H -0.217 1.217 14 C 0.302 3.698 15 O -0.519 6.519 16 C -0.127 4.127 17 C -0.378 4.378 18 S 0.520 5.480 19 C -0.237 4.237 20 C 0.028 3.972 21 C -0.171 4.171 22 C -0.088 4.088 23 C -0.171 4.171 24 C -0.079 4.079 25 N -0.202 5.202 26 N -0.106 5.106 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.213 0.787 36 H 0.178 0.822 37 H 0.203 0.797 38 H 0.194 0.806 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.557 -7.262 -16.766 18.337 hybrid contribution 0.020 0.141 1.062 1.072 sum -1.536 -7.122 -15.704 17.311 Atomic orbital electron populations 1.22884 0.80601 1.03318 1.00251 1.88086 1.20548 1.27870 1.95297 1.22815 0.94338 0.84563 0.99444 1.21677 0.91397 0.98079 0.90727 1.43515 1.54295 1.08158 1.07485 1.19932 1.28855 0.82013 1.09525 0.87732 1.26144 0.95273 1.03569 0.95341 1.69808 1.36948 1.37568 1.11534 0.85117 0.77058 0.79231 0.78816 1.15564 1.22190 1.21708 1.17997 0.81485 0.85595 0.84755 1.90567 1.60389 1.14301 1.86680 1.20520 1.07729 0.88826 0.95580 1.27155 1.06871 1.07373 0.96354 1.82520 1.60774 0.95947 1.08783 1.26499 1.07094 0.98534 0.91530 1.18783 0.99149 0.88399 0.90904 1.22239 1.00569 0.99779 0.94486 1.21995 0.94145 0.90822 1.01854 1.22687 0.98708 1.03033 0.92643 1.23206 0.95242 0.91456 0.97985 1.67666 1.12300 1.02746 1.37517 1.67548 1.09958 1.12315 1.20767 0.92702 0.94407 0.88873 0.91063 0.95301 0.87232 0.92497 0.92775 0.78693 0.82228 0.79667 0.80551 0.81977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.09 16 2 O -0.40 -18.30 10.45 -148.98 -1.56 -19.86 16 3 C 0.07 2.97 6.24 71.98 0.45 3.42 16 4 C 0.10 5.58 5.28 86.38 0.46 6.03 16 5 N -0.42 -23.96 2.47 -639.44 -1.58 -25.54 16 6 C -0.27 -15.91 7.46 84.07 0.63 -15.28 16 7 H 0.11 6.24 5.95 -2.91 -0.02 6.23 16 8 C 0.00 -0.27 5.34 84.93 0.45 0.18 16 9 N -0.92 -54.65 10.94 21.67 0.24 -54.42 16 10 Si 0.97 47.29 29.55 68.60 2.03 49.32 16 11 H -0.23 -10.88 7.11 99.48 0.71 -10.17 16 12 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 13 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 14 C 0.51 28.47 7.56 86.61 0.65 29.13 16 15 O -0.63 -35.87 16.34 -4.21 -0.07 -35.94 16 16 C 0.01 0.51 6.53 40.99 0.27 0.78 16 17 C -0.23 -8.61 10.64 67.39 0.72 -7.89 16 18 S 0.26 6.98 22.08 -56.49 -1.25 5.73 16 19 C 0.04 1.46 7.38 87.56 0.65 2.10 16 20 C 0.17 5.38 6.75 41.86 0.28 5.66 16 21 C -0.15 -3.04 9.63 22.61 0.22 -2.82 16 22 C -0.06 -0.89 10.16 22.44 0.23 -0.66 16 23 C -0.15 -2.43 10.11 22.42 0.23 -2.21 16 24 C 0.08 2.10 11.17 84.73 0.95 3.04 16 25 N -0.49 -17.93 10.25 -185.05 -1.90 -19.82 16 26 N -0.39 -18.51 6.91 -178.87 -1.24 -19.75 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 6.32 5.44 -2.39 -0.01 6.30 16 33 H 0.06 3.06 7.53 -2.39 -0.02 3.04 16 34 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.20 6.50 8.02 -2.91 -0.02 6.48 16 36 H 0.16 2.28 7.27 -2.91 -0.02 2.25 16 37 H 0.19 0.90 8.06 -2.91 -0.02 0.87 16 38 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -83.07 352.97 3.19 -79.88 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 1.09 Total: 16.82 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: 7.42 Total: 23.58 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -4.48 Total: -119.53 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -1.63 Total: -55.80 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Atomic # 16 Polarization: 6.98 SS G_CDS: -1.25 Total: 5.73 kcal Total: -83.07 3.19 -79.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001450854748.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.053 kcal (2) G-P(sol) polarization free energy of solvation -83.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds