Wall clock time and date at job start Tue Mar 31 2020 17:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99766 * 2 1 4 4 H 1.48498 * 109.46640 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47020 * 299.99954 * 3 2 1 6 6 H 1.48494 * 109.47139 * 60.00275 * 3 2 1 7 7 C 1.37882 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99471 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99774 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46586 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46695 * 180.02562 * 10 9 7 12 12 S 1.81401 * 109.46754 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54591 * 68.37215 * 12 11 10 14 14 O 1.42098 * 110.54261 * 291.61951 * 12 11 10 15 15 N 1.65608 * 104.44690 * 179.97438 * 12 11 10 16 16 C 1.46493 * 119.99916 * 64.72499 * 15 12 11 17 17 C 1.53005 * 109.47062 * 164.99917 * 16 15 12 18 18 C 1.50702 * 109.47208 * 179.97438 * 17 16 15 19 19 C 1.38203 * 119.97595 * 269.72635 * 18 17 16 20 20 C 1.38472 * 120.02648 * 179.76801 * 19 18 17 21 21 F 1.35102 * 120.01602 * 180.27029 * 20 19 18 22 22 C 1.38424 * 119.97076 * 0.52795 * 20 19 18 23 23 C 1.38411 * 119.94897 * 359.72347 * 22 20 19 24 24 F 1.35109 * 120.01167 * 179.97438 * 23 22 20 25 25 C 1.38204 * 119.97181 * 89.99746 * 18 17 16 26 26 H 0.97000 * 120.00376 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47072 * 60.00699 * 9 7 2 28 28 H 1.08997 * 109.47115 * 299.99968 * 9 7 2 29 29 H 1.08997 * 109.47792 * 60.00047 * 10 9 7 30 30 H 1.08997 * 109.46899 * 299.99526 * 10 9 7 31 31 H 1.08996 * 109.47267 * 59.99939 * 11 10 9 32 32 H 1.08997 * 109.46811 * 299.99275 * 11 10 9 33 33 H 0.97000 * 119.99287 * 244.99833 * 15 12 11 34 34 H 1.09002 * 109.47374 * 284.99622 * 16 15 12 35 35 H 1.08994 * 109.47678 * 44.99870 * 16 15 12 36 36 H 1.08998 * 109.46776 * 299.99558 * 17 16 15 37 37 H 1.09001 * 109.46650 * 59.99792 * 17 16 15 38 38 H 1.08003 * 119.98904 * 359.97438 * 19 18 17 39 39 H 1.08001 * 120.02234 * 179.69868 * 22 20 19 40 40 H 1.07999 * 119.98802 * 359.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 16 2.6592 -6.3658 -0.0019 13 8 3.3561 -6.4268 1.2349 14 8 3.3558 -6.4256 -1.2390 15 7 1.7088 -7.7221 -0.0019 16 6 0.8444 -8.0108 -1.1488 17 6 0.3713 -9.4641 -1.0778 18 6 -0.5185 -9.7609 -2.2574 19 6 -1.8825 -9.5602 -2.1613 20 6 -2.7004 -9.8280 -3.2460 21 9 -4.0331 -9.6265 -3.1536 22 6 -2.1526 -10.3074 -4.4234 23 6 -0.7871 -10.5131 -4.5168 24 9 -0.2511 -10.9814 -5.6652 25 6 0.0296 -10.2391 -3.4325 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8721 -3.6044 0.8894 30 1 2.8719 -3.6043 -0.8905 31 1 0.8540 -5.0446 -0.8913 32 1 0.8535 -5.0451 0.8886 33 1 1.7216 -8.3231 0.7594 34 1 -0.0193 -7.3461 -1.1293 35 1 1.4019 -7.8549 -2.0724 36 1 1.2350 -10.1287 -1.0974 37 1 -0.1863 -9.6198 -0.1542 38 1 -2.3103 -9.1910 -1.2408 39 1 -2.7904 -10.5213 -5.2684 40 1 1.0951 -10.3993 -3.5052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068907312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:33 Heat of formation + Delta-G solvation = -162.219241 kcal Electronic energy + Delta-G solvation = -25108.152474 eV Core-core repulsion = 20878.206455 eV Total energy + Delta-G solvation = -4229.946020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.100 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.41398 -49.39383 -39.66788 -36.99073 -36.23448 -35.77763 -34.69968 -32.77531 -32.20945 -30.79715 -28.66360 -27.83955 -24.19796 -23.75639 -23.32506 -21.90521 -20.69501 -19.32659 -18.22040 -17.69266 -17.37428 -16.87297 -16.75812 -16.51640 -16.30982 -16.17122 -15.76761 -15.70036 -15.19155 -14.85488 -14.74513 -14.48038 -14.20459 -13.92252 -13.32243 -13.04612 -12.63496 -12.40504 -12.33684 -12.31806 -12.03963 -11.95377 -11.92523 -11.81729 -11.78961 -11.54161 -11.25707 -10.95190 -10.86459 -10.44563 -9.98318 -9.80994 -9.43193 -9.34084 -9.21977 -9.10333 -8.42929 -6.07633 -4.10662 0.35846 0.49809 0.50930 2.72384 2.87659 3.28259 3.35911 3.37977 3.40721 3.86939 3.88801 4.00604 4.32288 4.34163 4.40953 4.46030 4.51219 4.64422 4.65949 4.96419 5.05515 5.14012 5.26183 5.29114 5.31654 5.34226 5.39142 5.50628 5.53466 5.71501 5.85078 5.86280 6.23638 6.28689 6.41642 6.78957 6.84847 7.54790 7.64304 7.90434 8.30746 8.95854 9.54290 11.03604 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.002373 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.706826 B =11796.989703 C =13016.791697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.601 3.399 13 O -0.962 6.962 14 O -0.961 6.961 15 N -1.126 6.126 16 C 0.116 3.884 17 C -0.088 4.088 18 C -0.024 4.024 19 C -0.159 4.159 20 C 0.134 3.866 21 F -0.130 7.130 22 C -0.196 4.196 23 C 0.134 3.866 24 F -0.130 7.130 25 C -0.158 4.158 26 H 0.261 0.739 27 H 0.021 0.979 28 H 0.020 0.980 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.415 0.585 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.846 -25.170 -4.802 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.740 4.740 12 S 2.697 3.303 13 O -0.953 6.953 14 O -0.951 6.951 15 N -0.884 5.884 16 C -0.010 4.010 17 C -0.127 4.127 18 C -0.025 4.025 19 C -0.178 4.178 20 C 0.115 3.885 21 F -0.108 7.108 22 C -0.215 4.215 23 C 0.114 3.886 24 F -0.108 7.108 25 C -0.177 4.177 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.249 0.751 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.063 -24.970 -5.016 25.791 hybrid contribution -0.646 0.843 0.023 1.062 sum -4.709 -24.127 -4.993 25.084 Atomic orbital electron populations 1.69964 1.06092 1.26693 1.50674 1.25025 0.94888 0.99395 0.95093 0.86500 0.80195 0.83505 0.77628 1.19594 1.20937 1.20936 1.21291 0.93296 0.90873 1.50951 0.92306 1.19069 0.93532 0.90485 0.97729 1.21506 0.99400 0.91645 1.02020 1.30541 1.16365 1.15893 1.11247 1.05304 0.75590 0.75199 0.74212 1.93584 1.70658 1.85853 1.45166 1.93570 1.70208 1.85688 1.45655 1.55730 1.62166 1.42812 1.27678 1.21296 0.94387 0.96015 0.89313 1.20833 0.99152 0.96807 0.95884 1.19371 0.92934 0.95533 0.94669 1.21167 0.93256 1.04073 0.99263 1.17256 0.77813 0.99287 0.94181 1.91557 1.30207 1.92449 1.96585 1.21064 0.94765 1.06310 0.99399 1.17253 0.90805 0.97795 0.82698 1.91555 1.86316 1.85720 1.47247 1.21182 1.01269 1.03175 0.92119 0.92940 0.96114 0.96121 0.91525 0.91535 0.85524 0.85227 0.75099 0.91091 0.89650 0.89091 0.89179 0.83601 0.83403 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.53 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.75 4.97 -27.88 -0.14 0.61 16 10 C -0.11 -2.09 5.16 -26.73 -0.14 -2.23 16 11 C -0.61 -8.77 6.07 37.16 0.23 -8.55 16 12 S 2.60 35.03 5.46 -107.50 -0.59 34.44 16 13 O -0.96 -15.91 18.08 -57.54 -1.04 -16.95 16 14 O -0.96 -15.91 17.51 -57.54 -1.01 -16.92 16 15 N -1.13 -9.92 5.88 -10.62 -0.06 -9.98 16 16 C 0.12 0.87 6.11 -4.04 -0.02 0.85 16 17 C -0.09 -0.46 5.49 -27.88 -0.15 -0.61 16 18 C -0.02 -0.15 5.13 -104.65 -0.54 -0.69 16 19 C -0.16 -1.06 9.68 -39.51 -0.38 -1.44 16 20 C 0.13 1.05 7.30 -39.43 -0.29 0.76 16 21 F -0.13 -1.15 17.27 2.25 0.04 -1.11 16 22 C -0.20 -1.47 10.01 -39.45 -0.39 -1.87 16 23 C 0.13 1.06 7.30 -39.43 -0.29 0.77 16 24 F -0.13 -1.15 17.27 2.25 0.04 -1.11 16 25 C -0.16 -1.09 9.68 -39.51 -0.38 -1.48 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.42 2.76 8.62 -34.47 -0.30 2.47 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.71 7.70 -51.93 -0.40 0.31 16 36 H 0.09 0.41 8.09 -51.93 -0.42 -0.01 16 37 H 0.09 0.33 8.08 -51.93 -0.42 -0.09 16 38 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -35.32 366.77 -9.59 -44.91 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.31 Total: -2.26 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -2.91 Total: -27.34 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.67 Total: -35.63 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -2.05 Total: -33.87 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.08 Total: -2.22 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 35.03 SS G_CDS: -0.59 Total: 34.44 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.32 -9.59 -44.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068907312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.308 kcal (2) G-P(sol) polarization free energy of solvation -35.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds