Wall clock time and date at job start Tue Mar 31 2020 17:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99766 * 2 1 4 4 H 1.48498 * 109.46640 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47020 * 299.99954 * 3 2 1 6 6 H 1.48494 * 109.47139 * 60.00275 * 3 2 1 7 7 C 1.37882 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99471 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99774 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46586 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46695 * 180.02562 * 10 9 7 12 12 S 1.81401 * 109.46754 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54591 * 68.37215 * 12 11 10 14 14 O 1.42098 * 110.54261 * 291.61951 * 12 11 10 15 15 N 1.65608 * 104.44690 * 179.97438 * 12 11 10 16 16 C 1.46493 * 119.99916 * 64.72499 * 15 12 11 17 17 C 1.53005 * 109.47062 * 164.99917 * 16 15 12 18 18 C 1.50702 * 109.47208 * 179.97438 * 17 16 15 19 19 C 1.38203 * 119.97595 * 269.72635 * 18 17 16 20 20 C 1.38472 * 120.02648 * 179.76801 * 19 18 17 21 21 F 1.35102 * 120.01602 * 180.27029 * 20 19 18 22 22 C 1.38424 * 119.97076 * 0.52795 * 20 19 18 23 23 C 1.38411 * 119.94897 * 359.72347 * 22 20 19 24 24 F 1.35109 * 120.01167 * 179.97438 * 23 22 20 25 25 C 1.38204 * 119.97181 * 89.99746 * 18 17 16 26 26 H 0.97000 * 120.00376 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47072 * 60.00699 * 9 7 2 28 28 H 1.08997 * 109.47115 * 299.99968 * 9 7 2 29 29 H 1.08997 * 109.47792 * 60.00047 * 10 9 7 30 30 H 1.08997 * 109.46899 * 299.99526 * 10 9 7 31 31 H 1.08996 * 109.47267 * 59.99939 * 11 10 9 32 32 H 1.08997 * 109.46811 * 299.99275 * 11 10 9 33 33 H 0.97000 * 119.99287 * 244.99833 * 15 12 11 34 34 H 1.09002 * 109.47374 * 284.99622 * 16 15 12 35 35 H 1.08994 * 109.47678 * 44.99870 * 16 15 12 36 36 H 1.08998 * 109.46776 * 299.99558 * 17 16 15 37 37 H 1.09001 * 109.46650 * 59.99792 * 17 16 15 38 38 H 1.08003 * 119.98904 * 359.97438 * 19 18 17 39 39 H 1.08001 * 120.02234 * 179.69868 * 22 20 19 40 40 H 1.07999 * 119.98802 * 359.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 16 2.6592 -6.3658 -0.0019 13 8 3.3561 -6.4268 1.2349 14 8 3.3558 -6.4256 -1.2390 15 7 1.7088 -7.7221 -0.0019 16 6 0.8444 -8.0108 -1.1488 17 6 0.3713 -9.4641 -1.0778 18 6 -0.5185 -9.7609 -2.2574 19 6 -1.8825 -9.5602 -2.1613 20 6 -2.7004 -9.8280 -3.2460 21 9 -4.0331 -9.6265 -3.1536 22 6 -2.1526 -10.3074 -4.4234 23 6 -0.7871 -10.5131 -4.5168 24 9 -0.2511 -10.9814 -5.6652 25 6 0.0296 -10.2391 -3.4325 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8721 -3.6044 0.8894 30 1 2.8719 -3.6043 -0.8905 31 1 0.8540 -5.0446 -0.8913 32 1 0.8535 -5.0451 0.8886 33 1 1.7216 -8.3231 0.7594 34 1 -0.0193 -7.3461 -1.1293 35 1 1.4019 -7.8549 -2.0724 36 1 1.2350 -10.1287 -1.0974 37 1 -0.1863 -9.6198 -0.1542 38 1 -2.3103 -9.1910 -1.2408 39 1 -2.7904 -10.5213 -5.2684 40 1 1.0951 -10.3993 -3.5052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068907312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:32 Heat of formation + Delta-G solvation = -185.757172 kcal Electronic energy + Delta-G solvation = -25109.173156 eV Core-core repulsion = 20878.206455 eV Total energy + Delta-G solvation = -4230.966701 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.100 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.03568 -50.01304 -40.18907 -38.17464 -37.07504 -36.82748 -36.44767 -34.15050 -33.37727 -31.33027 -29.63992 -29.23138 -25.61184 -24.78284 -23.87652 -22.54327 -22.28586 -20.35807 -18.96016 -18.61733 -18.30402 -18.20863 -17.51799 -17.36164 -17.12059 -16.98460 -16.75527 -16.48621 -16.33238 -16.25031 -15.55293 -15.40492 -15.35159 -14.57499 -14.46938 -14.07550 -13.86851 -13.62607 -13.46900 -13.20249 -13.16788 -13.09394 -12.96052 -12.92793 -12.77146 -12.59794 -12.47857 -12.35884 -12.23713 -12.10763 -11.73330 -11.35817 -11.08897 -10.57698 -10.35216 -9.94203 -9.77630 -8.22737 -6.33355 -0.71044 -0.06393 -0.05073 1.39547 1.40551 1.53500 1.81466 2.31500 2.39909 2.78997 2.82265 3.11020 3.27097 3.34760 3.49820 3.77086 3.82606 3.94442 3.96937 4.01448 4.14956 4.20642 4.41809 4.49371 4.59205 4.70322 4.77700 4.80678 4.85990 4.99373 4.99844 5.02662 5.08616 5.22160 5.37813 5.46620 5.64434 5.75503 5.80341 6.18709 6.20501 6.82792 7.36074 8.88836 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.002373 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.706826 B =11796.989703 C =13016.791697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.551 4.551 8 H 0.060 0.940 9 C 0.030 3.970 10 C -0.108 4.108 11 C -0.612 4.612 12 S 2.633 3.367 13 O -0.992 6.992 14 O -0.991 6.991 15 N -1.106 6.106 16 C 0.104 3.896 17 C -0.082 4.082 18 C -0.022 4.022 19 C -0.154 4.154 20 C 0.117 3.883 21 F -0.139 7.139 22 C -0.200 4.200 23 C 0.117 3.883 24 F -0.140 7.140 25 C -0.158 4.158 26 H 0.265 0.735 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.429 0.571 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 -25.911 -4.196 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.589 4.589 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.147 4.147 11 C -0.742 4.742 12 S 2.728 3.272 13 O -0.983 6.983 14 O -0.981 6.981 15 N -0.869 5.869 16 C -0.022 4.022 17 C -0.120 4.120 18 C -0.023 4.023 19 C -0.172 4.172 20 C 0.098 3.902 21 F -0.118 7.118 22 C -0.219 4.219 23 C 0.097 3.903 24 F -0.118 7.118 25 C -0.177 4.177 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.267 0.733 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.182 0.818 39 H 0.172 0.828 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.757 -25.712 -4.400 26.355 hybrid contribution -0.791 1.005 -0.183 1.292 sum -4.548 -24.708 -4.583 25.538 Atomic orbital electron populations 1.70071 1.07589 1.27800 1.51507 1.25923 0.95805 1.03186 0.94643 0.85446 0.79098 0.78946 0.77883 1.18799 1.20290 1.20235 1.21783 0.93731 0.92581 1.50824 0.92223 1.18969 0.94047 0.91851 0.95929 1.21311 0.98678 0.92662 1.02049 1.30519 1.16775 1.13722 1.13192 1.04091 0.75074 0.75303 0.72735 1.93540 1.71858 1.86457 1.46397 1.93535 1.71317 1.86284 1.46968 1.55224 1.61804 1.41058 1.28785 1.21558 0.94423 0.98038 0.88187 1.20830 0.99634 0.95248 0.96287 1.19466 0.92908 0.95199 0.94764 1.21413 0.93317 1.03026 0.99477 1.17435 0.77637 1.00339 0.94837 1.91532 1.30897 1.92666 1.96660 1.21182 0.94909 1.06063 0.99757 1.17418 0.91134 0.98833 0.82874 1.91528 1.86435 1.86011 1.47836 1.21411 1.01861 1.02461 0.91957 0.92658 0.97849 0.97836 0.91578 0.91618 0.83717 0.83404 0.73344 0.89692 0.90495 0.87958 0.86887 0.81799 0.82788 0.82432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.55 -31.06 9.11 25.60 0.23 -30.83 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.53 4.97 29.85 0.15 1.68 16 10 C -0.11 -4.23 5.16 30.60 0.16 -4.07 16 11 C -0.61 -16.74 6.07 71.98 0.44 -16.31 16 12 S 2.63 66.45 5.46 -56.49 -0.31 66.14 16 13 O -0.99 -31.37 18.08 -127.65 -2.31 -33.68 16 14 O -0.99 -31.54 17.51 -127.65 -2.24 -33.78 16 15 N -1.11 -16.27 5.88 -187.50 -1.10 -17.37 16 16 C 0.10 1.24 6.11 86.38 0.53 1.77 16 17 C -0.08 -0.57 5.49 29.85 0.16 -0.40 16 18 C -0.02 -0.23 5.13 -19.88 -0.10 -0.33 16 19 C -0.15 -1.71 9.68 22.32 0.22 -1.50 16 20 C 0.12 1.72 7.30 22.37 0.16 1.88 16 21 F -0.14 -2.39 17.27 44.97 0.78 -1.61 16 22 C -0.20 -2.92 10.01 22.36 0.22 -2.69 16 23 C 0.12 1.77 7.30 22.37 0.16 1.93 16 24 F -0.14 -2.44 17.27 44.97 0.78 -1.66 16 25 C -0.16 -1.93 9.68 22.32 0.22 -1.71 16 26 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 27 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.14 3.40 8.14 -2.39 -0.02 3.38 16 32 H 0.15 3.49 8.14 -2.39 -0.02 3.47 16 33 H 0.43 4.23 8.62 -96.75 -0.83 3.40 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 1.10 7.70 -2.39 -0.02 1.08 16 36 H 0.10 0.54 8.09 -2.39 -0.02 0.52 16 37 H 0.11 0.33 8.08 -2.39 -0.02 0.31 16 38 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -76.27 366.77 1.15 -75.11 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.23 Total: 5.88 kcal Atomic # 6 Polarization: -52.98 SS G_CDS: 3.01 Total: -49.97 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -0.82 Total: -72.39 kcal Atomic # 8 Polarization: -62.91 SS G_CDS: -4.54 Total: -67.46 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 1.55 Total: -3.27 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 66.45 SS G_CDS: -0.31 Total: 66.14 kcal Total: -76.27 1.15 -75.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068907312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.643 kcal (2) G-P(sol) polarization free energy of solvation -76.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds