Wall clock time and date at job start Tue Mar 31 2020 17:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46694 * 2 1 4 4 N 1.46500 * 109.47378 * 119.99595 * 2 1 3 5 5 C 1.46504 * 119.99817 * 297.90462 * 4 2 1 6 6 C 1.53003 * 109.47438 * 91.29358 * 5 4 2 7 7 F 1.39900 * 109.46804 * 293.29337 * 6 5 4 8 8 F 1.39897 * 109.47007 * 53.29203 * 6 5 4 9 9 S 1.65594 * 120.00099 * 117.62313 * 4 2 1 10 10 O 1.42097 * 106.40468 * 203.54589 * 9 4 2 11 11 O 1.42101 * 106.40145 * 336.46536 * 9 4 2 12 12 C 1.76204 * 107.21784 * 90.00299 * 9 4 2 13 13 C 1.38634 * 119.74676 * 269.73117 * 12 9 4 14 14 C 1.37618 * 120.24447 * 179.71971 * 13 12 9 15 15 C 1.40716 * 119.74796 * 0.56876 * 14 13 12 16 16 C 1.41391 * 120.24860 * 179.67897 * 15 14 13 17 17 H 1.07998 * 120.00174 * 172.79586 * 16 15 14 18 18 C 1.39955 * 119.99917 * 352.79578 * 16 15 14 19 19 N 1.30817 * 119.99704 * 322.52875 * 18 16 15 20 20 Si 1.86797 * 119.99793 * 142.52686 * 18 16 15 21 21 H 1.48502 * 109.46995 * 94.99838 * 20 18 16 22 22 H 1.48497 * 109.47112 * 214.99624 * 20 18 16 23 23 H 1.48504 * 109.47223 * 334.99675 * 20 18 16 24 24 C 1.40715 * 119.50757 * 359.70531 * 15 14 13 25 25 C 1.37622 * 119.74877 * 359.97438 * 24 15 14 26 26 H 1.08995 * 109.47457 * 313.78941 * 1 2 3 27 27 H 1.09000 * 109.47044 * 73.79611 * 1 2 3 28 28 H 1.09004 * 109.46811 * 193.79030 * 1 2 3 29 29 H 1.08993 * 109.47074 * 240.00002 * 2 1 3 30 30 H 1.09000 * 109.46698 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46843 * 299.99457 * 3 2 1 32 32 H 1.08993 * 109.47359 * 60.00177 * 3 2 1 33 33 H 1.09006 * 109.46538 * 211.29061 * 5 4 2 34 34 H 1.08990 * 109.47178 * 331.28841 * 5 4 2 35 35 H 1.08995 * 109.47185 * 173.29607 * 6 5 4 36 36 H 1.08001 * 119.87705 * 359.97368 * 13 12 9 37 37 H 1.08001 * 120.12817 * 180.27323 * 14 13 12 38 38 H 0.97005 * 119.99970 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.12921 * 179.97438 * 24 15 14 40 40 H 1.07993 * 119.87642 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7028 -0.1636 2.5263 6 6 0.4079 -0.8016 3.0336 7 9 -0.6633 -0.3764 2.2405 8 9 0.5158 -2.1947 2.9635 9 16 2.9213 -2.0704 1.0451 10 8 2.7729 -2.7828 2.2656 11 8 2.5977 -2.6248 -0.2227 12 6 4.6116 -1.5806 0.9571 13 6 5.1887 -1.3188 -0.2759 14 6 6.5064 -0.9300 -0.3561 15 6 7.2717 -0.8103 0.8187 16 6 8.6283 -0.4182 0.7481 17 1 9.1795 -0.2146 1.6542 18 6 9.2569 -0.2939 -0.4962 19 7 8.9803 -1.1387 -1.4560 20 14 10.4908 1.0782 -0.7862 21 1 11.8640 0.5691 -0.5405 22 1 10.3826 1.5528 -2.1891 23 1 10.2068 2.2034 0.1403 24 6 6.6770 -1.0841 2.0642 25 6 5.3557 -1.4650 2.1211 26 1 -0.3634 0.7111 0.7418 27 1 -0.3633 0.2868 -0.9868 28 1 -0.3633 -0.9981 0.2450 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 2.5166 -0.3984 3.2125 34 1 1.5768 0.9174 2.4683 35 1 0.2360 -0.5020 4.0673 36 1 4.6008 -1.4164 -1.1766 37 1 6.9528 -0.7223 -1.3173 38 1 9.4158 -1.0524 -2.3185 39 1 7.2552 -0.9958 2.9722 40 1 4.8971 -1.6753 3.0760 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134598210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:18 Heat of formation + Delta-G solvation = -157.877235 kcal Electronic energy + Delta-G solvation = -27922.503426 eV Core-core repulsion = 23692.745690 eV Total energy + Delta-G solvation = -4229.757736 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.100 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.82925 -46.78783 -37.56232 -37.36946 -36.47464 -35.02279 -34.21484 -32.15961 -30.35230 -29.45138 -28.41494 -27.04482 -25.85793 -23.44005 -21.53628 -21.15870 -20.62068 -18.57349 -17.76046 -17.48860 -17.25076 -16.97304 -16.66426 -16.23593 -15.52617 -15.36868 -14.43866 -14.22905 -14.02631 -13.72448 -13.51483 -13.44685 -13.20043 -13.07172 -12.66134 -12.59117 -12.36259 -12.26518 -12.21133 -11.73886 -11.60005 -11.53084 -11.44727 -11.38705 -11.26179 -11.20340 -10.97280 -10.89216 -10.68845 -10.60345 -10.49940 -9.81348 -9.61305 -9.26276 -8.80975 -8.13462 -7.71658 -7.40507 -4.81253 1.21222 2.28145 2.76061 2.83414 2.93146 2.94875 3.50349 3.56008 3.92242 4.04007 4.32811 4.52302 4.60017 4.76001 5.02220 5.09770 5.24536 5.32456 5.38566 5.43452 5.49398 5.72232 5.80248 5.86643 5.97315 6.06710 6.12021 6.20530 6.43025 6.50496 6.55341 6.66898 6.78612 6.99840 7.06753 7.28196 7.45451 7.65840 7.74340 7.88276 8.25691 8.46129 8.65630 9.50551 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.021640 B = 0.003639 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.562445 B = 7692.709801 C = 8016.708738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 C -0.162 4.162 4 N -0.996 5.996 5 C 0.080 3.920 6 C 0.235 3.765 7 F -0.202 7.202 8 F -0.188 7.188 9 S 2.685 3.315 10 O -0.970 6.970 11 O -0.980 6.980 12 C -0.803 4.803 13 C -0.007 4.007 14 C -0.209 4.209 15 C 0.130 3.870 16 C -0.429 4.429 17 H 0.091 0.909 18 C 0.083 3.917 19 N -0.730 5.730 20 Si 0.909 3.091 21 H -0.264 1.264 22 H -0.269 1.269 23 H -0.252 1.252 24 C -0.248 4.248 25 C 0.007 3.993 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.293 0.707 39 H 0.098 0.902 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.127 7.386 3.705 13.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 C -0.220 4.220 4 N -0.829 5.829 5 C -0.048 4.048 6 C 0.179 3.821 7 F -0.183 7.183 8 F -0.169 7.169 9 S 2.786 3.214 10 O -0.960 6.960 11 O -0.971 6.971 12 C -0.899 4.899 13 C -0.028 4.028 14 C -0.229 4.229 15 C 0.127 3.873 16 C -0.453 4.453 17 H 0.110 0.890 18 C -0.145 4.145 19 N -0.349 5.349 20 Si 0.730 3.270 21 H -0.188 1.188 22 H -0.193 1.193 23 H -0.176 1.176 24 C -0.268 4.268 25 C -0.013 4.013 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.117 0.883 37 H 0.138 0.862 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.507 6.388 3.396 12.757 hybrid contribution 1.120 0.927 -0.309 1.487 sum -9.386 7.315 3.087 12.294 Atomic orbital electron populations 1.22666 0.94756 1.03203 1.01817 1.20878 0.94863 0.93664 0.87133 1.22168 1.02428 0.95616 1.01812 1.58048 1.68459 1.46727 1.09661 1.22260 0.95920 1.00996 0.85633 1.22554 0.86675 0.77588 0.95293 1.92961 1.59285 1.89414 1.76648 1.93093 1.96181 1.30283 1.97357 1.01621 0.74232 0.72625 0.72964 1.93508 1.87071 1.69257 1.46207 1.93468 1.84924 1.75523 1.43212 1.29101 1.21532 1.39379 0.99925 1.20165 0.95304 0.93491 0.93795 1.21315 0.93482 1.09337 0.98799 1.17734 0.92729 0.85307 0.91561 1.19975 0.95686 1.36086 0.93600 0.89050 1.26286 0.97221 0.95557 0.95454 1.69943 1.32722 1.27736 1.04526 0.86279 0.79861 0.81526 0.79311 1.18845 1.19307 1.17565 1.20853 0.95425 1.13750 0.96792 1.20088 0.94189 0.92490 0.94576 0.90816 0.92667 0.91923 0.88260 0.91442 0.91744 0.92464 0.87425 0.87432 0.87072 0.88260 0.86159 0.89523 0.88418 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 7.52 37.16 0.28 -1.78 16 2 C 0.14 1.96 3.22 -67.93 -0.22 1.74 16 3 C -0.16 -1.89 9.09 37.16 0.34 -1.55 16 4 N -1.00 -15.44 2.60 -107.30 -0.28 -15.71 16 5 C 0.08 0.96 5.40 -4.04 -0.02 0.93 16 6 C 0.23 2.75 5.60 37.16 0.21 2.96 16 7 F -0.20 -2.45 12.08 2.25 0.03 -2.42 16 8 F -0.19 -3.07 14.58 2.25 0.03 -3.04 16 9 S 2.68 54.07 5.43 -107.50 -0.58 53.49 16 10 O -0.97 -20.85 14.09 -57.17 -0.81 -21.66 16 11 O -0.98 -22.15 15.84 -57.17 -0.91 -23.05 16 12 C -0.80 -17.86 6.00 -39.29 -0.24 -18.09 16 13 C -0.01 -0.17 9.49 -39.66 -0.38 -0.55 16 14 C -0.21 -5.20 8.93 -38.87 -0.35 -5.55 16 15 C 0.13 3.26 5.70 -106.83 -0.61 2.65 16 16 C -0.43 -10.25 8.96 -37.74 -0.34 -10.59 16 17 H 0.09 2.07 8.05 -52.49 -0.42 1.64 16 18 C 0.08 1.83 4.86 -17.34 -0.08 1.75 16 19 N -0.73 -16.77 11.22 55.55 0.62 -16.15 16 20 Si 0.91 16.13 29.68 -169.99 -5.05 11.08 16 21 H -0.26 -4.59 7.11 56.52 0.40 -4.18 16 22 H -0.27 -4.66 7.11 56.52 0.40 -4.25 16 23 H -0.25 -4.49 7.11 56.52 0.40 -4.09 16 24 C -0.25 -5.79 9.80 -38.87 -0.38 -6.17 16 25 C 0.01 0.15 9.49 -39.66 -0.38 -0.23 16 26 H 0.07 0.82 6.11 -51.93 -0.32 0.50 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.89 7.19 -51.93 -0.37 0.51 16 29 H 0.10 1.53 6.95 -51.93 -0.36 1.17 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.57 6.59 -51.93 -0.34 0.23 16 33 H 0.11 1.23 7.84 -51.93 -0.41 0.83 16 34 H 0.11 0.96 6.32 -51.93 -0.33 0.63 16 35 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 2.18 7.59 -52.49 -0.40 1.78 16 37 H 0.12 3.00 5.77 -52.49 -0.30 2.70 16 38 H 0.29 5.92 8.30 -40.82 -0.34 5.58 16 39 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 40 H 0.10 1.99 7.60 -52.49 -0.40 1.59 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -30.36 339.80 -8.88 -39.24 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.90 Total: 7.58 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: -2.16 Total: -34.48 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.34 Total: -31.86 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -1.71 Total: -44.71 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.06 Total: -5.46 kcal Atomic # 14 Polarization: 16.13 SS G_CDS: -5.05 Total: 11.08 kcal Atomic # 16 Polarization: 54.07 SS G_CDS: -0.58 Total: 53.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.36 -8.88 -39.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134598210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.641 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds