Wall clock time and date at job start Tue Mar 31 2020 17:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46694 * 2 1 4 4 N 1.46500 * 109.47378 * 119.99595 * 2 1 3 5 5 C 1.46504 * 119.99817 * 297.90462 * 4 2 1 6 6 C 1.53003 * 109.47438 * 91.29358 * 5 4 2 7 7 F 1.39900 * 109.46804 * 293.29337 * 6 5 4 8 8 F 1.39897 * 109.47007 * 53.29203 * 6 5 4 9 9 S 1.65594 * 120.00099 * 117.62313 * 4 2 1 10 10 O 1.42097 * 106.40468 * 203.54589 * 9 4 2 11 11 O 1.42101 * 106.40145 * 336.46536 * 9 4 2 12 12 C 1.76204 * 107.21784 * 90.00299 * 9 4 2 13 13 C 1.38634 * 119.74676 * 269.73117 * 12 9 4 14 14 C 1.37618 * 120.24447 * 179.71971 * 13 12 9 15 15 C 1.40716 * 119.74796 * 0.56876 * 14 13 12 16 16 C 1.41391 * 120.24860 * 179.67897 * 15 14 13 17 17 H 1.07998 * 120.00174 * 172.79586 * 16 15 14 18 18 C 1.39955 * 119.99917 * 352.79578 * 16 15 14 19 19 N 1.30817 * 119.99704 * 322.52875 * 18 16 15 20 20 Si 1.86797 * 119.99793 * 142.52686 * 18 16 15 21 21 H 1.48502 * 109.46995 * 94.99838 * 20 18 16 22 22 H 1.48497 * 109.47112 * 214.99624 * 20 18 16 23 23 H 1.48504 * 109.47223 * 334.99675 * 20 18 16 24 24 C 1.40715 * 119.50757 * 359.70531 * 15 14 13 25 25 C 1.37622 * 119.74877 * 359.97438 * 24 15 14 26 26 H 1.08995 * 109.47457 * 313.78941 * 1 2 3 27 27 H 1.09000 * 109.47044 * 73.79611 * 1 2 3 28 28 H 1.09004 * 109.46811 * 193.79030 * 1 2 3 29 29 H 1.08993 * 109.47074 * 240.00002 * 2 1 3 30 30 H 1.09000 * 109.46698 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46843 * 299.99457 * 3 2 1 32 32 H 1.08993 * 109.47359 * 60.00177 * 3 2 1 33 33 H 1.09006 * 109.46538 * 211.29061 * 5 4 2 34 34 H 1.08990 * 109.47178 * 331.28841 * 5 4 2 35 35 H 1.08995 * 109.47185 * 173.29607 * 6 5 4 36 36 H 1.08001 * 119.87705 * 359.97368 * 13 12 9 37 37 H 1.08001 * 120.12817 * 180.27323 * 14 13 12 38 38 H 0.97005 * 119.99970 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.12921 * 179.97438 * 24 15 14 40 40 H 1.07993 * 119.87642 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7028 -0.1636 2.5263 6 6 0.4079 -0.8016 3.0336 7 9 -0.6633 -0.3764 2.2405 8 9 0.5158 -2.1947 2.9635 9 16 2.9213 -2.0704 1.0451 10 8 2.7729 -2.7828 2.2656 11 8 2.5977 -2.6248 -0.2227 12 6 4.6116 -1.5806 0.9571 13 6 5.1887 -1.3188 -0.2759 14 6 6.5064 -0.9300 -0.3561 15 6 7.2717 -0.8103 0.8187 16 6 8.6283 -0.4182 0.7481 17 1 9.1795 -0.2146 1.6542 18 6 9.2569 -0.2939 -0.4962 19 7 8.9803 -1.1387 -1.4560 20 14 10.4908 1.0782 -0.7862 21 1 11.8640 0.5691 -0.5405 22 1 10.3826 1.5528 -2.1891 23 1 10.2068 2.2034 0.1403 24 6 6.6770 -1.0841 2.0642 25 6 5.3557 -1.4650 2.1211 26 1 -0.3634 0.7111 0.7418 27 1 -0.3633 0.2868 -0.9868 28 1 -0.3633 -0.9981 0.2450 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 2.5166 -0.3984 3.2125 34 1 1.5768 0.9174 2.4683 35 1 0.2360 -0.5020 4.0673 36 1 4.6008 -1.4164 -1.1766 37 1 6.9528 -0.7223 -1.3173 38 1 9.4158 -1.0524 -2.3185 39 1 7.2552 -0.9958 2.9722 40 1 4.8971 -1.6753 3.0760 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134598210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:17 Heat of formation + Delta-G solvation = -176.149143 kcal Electronic energy + Delta-G solvation = -27923.295756 eV Core-core repulsion = 23692.745690 eV Total energy + Delta-G solvation = -4230.550065 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.100 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.79549 -47.80249 -39.34557 -38.51704 -38.13595 -36.71862 -35.94385 -33.18770 -32.13989 -31.26155 -29.48137 -28.02138 -27.61455 -24.41097 -23.29662 -22.93688 -21.84196 -19.85645 -19.50298 -18.95731 -18.43935 -18.10360 -17.82123 -17.56264 -17.12133 -16.62126 -15.90173 -15.86958 -15.23754 -15.12357 -15.01369 -14.70107 -14.54230 -14.21087 -14.13597 -14.03562 -13.70708 -13.43181 -13.34443 -13.30296 -13.12389 -13.04049 -12.91006 -12.88102 -12.67224 -12.52784 -12.47436 -12.13327 -12.07577 -11.75382 -11.55736 -11.54186 -11.27143 -10.99803 -10.07708 -9.89765 -9.55313 -9.08904 -6.62531 -0.34480 0.54987 1.09091 1.30939 1.41037 1.54464 2.05310 2.11939 2.40302 2.94843 3.12481 3.45867 3.46373 3.53104 3.60103 3.88025 4.09870 4.23262 4.26944 4.29673 4.34006 4.41756 4.58451 4.76275 4.82947 4.84286 4.85987 4.92899 5.04825 5.10666 5.21524 5.27333 5.44443 5.48545 5.49798 5.63442 5.69538 5.83270 5.93530 6.10146 6.45081 6.64617 6.83958 7.87224 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.021640 B = 0.003639 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.562445 B = 7692.709801 C = 8016.708738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 C -0.155 4.155 4 N -0.991 5.991 5 C 0.066 3.934 6 C 0.225 3.775 7 F -0.204 7.204 8 F -0.219 7.219 9 S 2.707 3.293 10 O -0.984 6.984 11 O -1.011 7.011 12 C -0.815 4.815 13 C -0.014 4.014 14 C -0.235 4.235 15 C 0.101 3.899 16 C -0.454 4.454 17 H 0.097 0.903 18 C 0.046 3.954 19 N -0.763 5.763 20 Si 0.986 3.014 21 H -0.253 1.253 22 H -0.260 1.260 23 H -0.252 1.252 24 C -0.266 4.266 25 C 0.005 3.995 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.146 0.854 35 H 0.164 0.836 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.305 0.695 39 H 0.111 0.889 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.731 9.614 4.625 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 C -0.214 4.214 4 N -0.827 5.827 5 C -0.060 4.060 6 C 0.170 3.830 7 F -0.186 7.186 8 F -0.200 7.200 9 S 2.806 3.194 10 O -0.974 6.974 11 O -1.002 7.002 12 C -0.909 4.909 13 C -0.034 4.034 14 C -0.255 4.255 15 C 0.098 3.902 16 C -0.478 4.478 17 H 0.115 0.885 18 C -0.179 4.179 19 N -0.383 5.383 20 Si 0.804 3.196 21 H -0.177 1.177 22 H -0.184 1.184 23 H -0.175 1.175 24 C -0.286 4.286 25 C -0.014 4.014 26 H 0.111 0.889 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.164 0.836 35 H 0.181 0.819 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.129 0.871 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.085 8.600 4.320 14.680 hybrid contribution 1.195 0.216 -0.588 1.350 sum -9.890 8.816 3.732 13.764 Atomic orbital electron populations 1.22624 0.93177 1.02534 1.03424 1.21081 0.96015 0.94545 0.85659 1.22132 1.01051 0.94209 1.04003 1.57653 1.67293 1.45876 1.11922 1.22737 0.96525 1.03189 0.83569 1.23095 0.86288 0.75795 0.97776 1.92946 1.59322 1.89206 1.77104 1.93033 1.96326 1.33070 1.97583 1.00841 0.73469 0.73184 0.71937 1.93480 1.87011 1.70453 1.46488 1.93422 1.85025 1.76984 1.44767 1.29503 1.23490 1.38407 0.99463 1.20310 0.95035 0.93345 0.94730 1.21348 0.94231 1.11219 0.98679 1.18078 0.93730 0.86222 0.92187 1.20298 0.95735 1.36872 0.94931 0.88484 1.27210 0.98883 0.97374 0.94465 1.69936 1.33755 1.29245 1.05343 0.85132 0.77323 0.77783 0.79358 1.17724 1.18429 1.17515 1.21095 0.96242 1.14434 0.96868 1.20377 0.93859 0.91606 0.95593 0.88853 0.91080 0.94030 0.90582 0.93520 0.89884 0.89974 0.86819 0.83649 0.81923 0.87851 0.87110 0.88307 0.87069 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 7.52 71.98 0.54 -3.08 16 2 C 0.13 3.52 3.22 44.99 0.14 3.66 16 3 C -0.16 -3.28 9.09 71.98 0.65 -2.62 16 4 N -0.99 -29.48 2.60 -493.38 -1.28 -30.76 16 5 C 0.07 1.39 5.40 86.38 0.47 1.86 16 6 C 0.23 4.62 5.60 71.98 0.40 5.03 16 7 F -0.20 -4.36 12.08 44.97 0.54 -3.82 16 8 F -0.22 -6.85 14.58 44.97 0.66 -6.19 16 9 S 2.71 109.34 5.43 -56.49 -0.31 109.03 16 10 O -0.98 -41.98 14.09 -128.00 -1.80 -43.78 16 11 O -1.01 -46.76 15.84 -128.00 -2.03 -48.78 16 12 C -0.82 -36.75 6.00 22.46 0.13 -36.62 16 13 C -0.01 -0.69 9.49 22.22 0.21 -0.48 16 14 C -0.23 -12.14 8.93 22.73 0.20 -11.93 16 15 C 0.10 5.21 5.70 -21.29 -0.12 5.09 16 16 C -0.45 -22.12 8.96 23.46 0.21 -21.91 16 17 H 0.10 4.44 8.05 -2.91 -0.02 4.42 16 18 C 0.05 2.05 4.86 85.26 0.41 2.46 16 19 N -0.76 -35.70 11.22 21.83 0.24 -35.46 16 20 Si 0.99 32.53 29.68 68.60 2.04 34.56 16 21 H -0.25 -7.89 7.11 99.48 0.71 -7.18 16 22 H -0.26 -8.16 7.11 99.48 0.71 -7.46 16 23 H -0.25 -8.23 7.11 99.48 0.71 -7.52 16 24 C -0.27 -12.61 9.80 22.73 0.22 -12.39 16 25 C 0.01 0.24 9.49 22.22 0.21 0.45 16 26 H 0.09 1.75 6.11 -2.39 -0.01 1.73 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.04 1.12 7.19 -2.38 -0.02 1.11 16 29 H 0.08 2.37 6.95 -2.39 -0.02 2.35 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.31 6.59 -2.39 -0.02 1.29 16 33 H 0.11 2.30 7.84 -2.38 -0.02 2.28 16 34 H 0.15 1.95 6.32 -2.39 -0.02 1.93 16 35 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.10 4.76 7.59 -2.91 -0.02 4.74 16 37 H 0.11 5.80 5.77 -2.91 -0.02 5.78 16 38 H 0.31 12.43 8.30 -92.70 -0.77 11.66 16 39 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 40 H 0.13 4.81 7.60 -2.91 -0.02 4.79 16 Total: -1.00 -68.18 339.80 2.83 -65.35 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 1.07 Total: 30.33 kcal Atomic # 6 Polarization: -74.18 SS G_CDS: 3.70 Total: -70.48 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -1.04 Total: -66.22 kcal Atomic # 8 Polarization: -88.73 SS G_CDS: -3.83 Total: -92.56 kcal Atomic # 9 Polarization: -11.22 SS G_CDS: 1.20 Total: -10.02 kcal Atomic # 14 Polarization: 32.53 SS G_CDS: 2.04 Total: 34.56 kcal Atomic # 16 Polarization: 109.34 SS G_CDS: -0.31 Total: 109.03 kcal Total: -68.18 2.83 -65.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134598210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.797 kcal (2) G-P(sol) polarization free energy of solvation -68.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds