Wall clock time and date at job start Tue Mar 31 2020 18:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47116 * 2 1 4 4 C 1.50705 * 109.47249 * 119.99895 * 2 1 3 5 5 H 1.07998 * 119.99972 * 85.01580 * 4 2 1 6 6 C 1.37876 * 119.99911 * 265.02257 * 4 2 1 7 7 N 1.31513 * 119.99752 * 176.79959 * 6 4 2 8 8 Si 1.86793 * 120.00278 * 356.79391 * 6 4 2 9 9 H 1.48504 * 109.47194 * 274.91241 * 8 6 4 10 10 H 1.48504 * 109.47343 * 34.90823 * 8 6 4 11 11 H 1.48497 * 109.47457 * 154.91386 * 8 6 4 12 12 N 1.46503 * 109.47231 * 239.99765 * 2 1 3 13 13 C 1.46503 * 119.99980 * 300.00070 * 12 2 1 14 14 S 1.65594 * 120.00062 * 119.99851 * 12 2 1 15 15 O 1.42098 * 106.40592 * 203.54360 * 14 12 2 16 16 O 1.42109 * 106.40161 * 336.46203 * 14 12 2 17 17 N 1.65597 * 107.21952 * 90.00044 * 14 12 2 18 18 C 1.46503 * 120.00273 * 270.00241 * 17 14 12 19 19 C 1.46502 * 119.99577 * 89.99926 * 17 14 12 20 20 C 1.52999 * 109.46891 * 95.00698 * 19 17 14 21 21 C 1.50704 * 109.47181 * 180.02562 * 20 19 17 22 22 N 1.29024 * 124.91958 * 89.68731 * 21 20 19 23 23 C 1.31780 * 117.12537 * 179.81484 * 22 21 20 24 24 C 1.33640 * 114.49938 * 0.47283 * 23 22 21 25 25 S 1.70972 * 124.91145 * 269.99783 * 21 20 19 26 26 H 1.09003 * 109.47088 * 305.58229 * 1 2 3 27 27 H 1.08992 * 109.47435 * 65.58896 * 1 2 3 28 28 H 1.09003 * 109.47363 * 185.59080 * 1 2 3 29 29 H 0.97005 * 120.00234 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.46793 * 89.99374 * 13 12 2 31 31 H 1.08992 * 109.47307 * 209.99528 * 13 12 2 32 32 H 1.09001 * 109.47136 * 329.99861 * 13 12 2 33 33 H 1.09000 * 109.46733 * 89.99880 * 18 17 14 34 34 H 1.08997 * 109.46798 * 209.99943 * 18 17 14 35 35 H 1.08992 * 109.46810 * 330.00138 * 18 17 14 36 36 H 1.09004 * 109.46846 * 215.00149 * 19 17 14 37 37 H 1.09000 * 109.47450 * 335.00387 * 19 17 14 38 38 H 1.09004 * 109.46927 * 299.99401 * 20 19 17 39 39 H 1.08996 * 109.47781 * 59.99813 * 20 19 17 40 40 H 1.07998 * 122.75452 * 180.23007 * 23 22 21 41 41 H 1.07998 * 126.04007 * 179.71497 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.1357 -1.7854 1.2290 6 6 2.3598 0.0121 2.3582 7 7 2.7381 -0.6121 3.4522 8 14 2.2664 1.8775 2.3322 9 1 3.5328 2.4290 1.7868 10 1 1.1312 2.3044 1.4753 11 1 2.0612 2.3822 3.7136 12 7 2.0183 -0.6907 -1.1962 13 6 1.6644 -2.0933 -1.4279 14 16 2.9703 0.1141 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6903 1.4972 -2.1193 17 7 4.5437 -0.1043 -1.8180 18 6 5.1725 0.8458 -0.8969 19 6 5.3068 -1.2475 -2.3249 20 6 6.1144 -0.8181 -3.5514 21 6 6.8989 -1.9943 -4.0732 22 7 6.4702 -2.8371 -4.9510 23 6 7.2886 -3.8089 -5.3008 24 6 8.4701 -3.7902 -4.6764 25 16 8.4832 -2.4092 -3.5822 26 1 -0.3633 0.5980 0.8358 27 1 -0.3634 0.4247 -0.9357 28 1 -0.3634 -1.0228 0.1001 29 1 2.9681 -0.1039 4.2458 30 1 0.7375 -2.1444 -1.9992 31 1 2.4628 -2.5820 -1.9863 32 1 1.5295 -2.5969 -0.4707 33 1 5.0124 0.5165 0.1297 34 1 6.2422 0.8950 -1.1002 35 1 4.7305 1.8324 -1.0351 36 1 5.9852 -1.6039 -1.5497 37 1 4.6208 -2.0475 -2.6034 38 1 5.4360 -0.4617 -4.3266 39 1 6.8004 -0.0181 -3.2730 40 1 7.0248 -4.5612 -6.0294 41 1 9.2744 -4.4970 -4.8171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282356958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:58 Heat of formation + Delta-G solvation = -22.807026 kcal Electronic energy + Delta-G solvation = -25506.116330 eV Core-core repulsion = 21868.348816 eV Total energy + Delta-G solvation = -3637.767515 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 333.097 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -39.80568 -36.90067 -36.57718 -36.29302 -35.31743 -32.54540 -32.51391 -29.94922 -29.20171 -26.50107 -25.69118 -25.19589 -24.51737 -22.54524 -20.62462 -20.05901 -18.44885 -18.12491 -17.49153 -17.11336 -16.57984 -16.12135 -15.65009 -15.03283 -14.63275 -14.37405 -14.25717 -13.96193 -13.50402 -13.40766 -13.16061 -12.85406 -12.63954 -12.55663 -12.30988 -12.24895 -11.93933 -11.81023 -11.68728 -11.62894 -11.46345 -11.25595 -11.20271 -10.91735 -10.81143 -10.69084 -10.36933 -9.85914 -9.75179 -9.59927 -9.41700 -9.17618 -8.76654 -8.66252 -8.05779 -6.24354 -4.25188 0.52801 1.11693 1.20550 1.58394 2.69804 3.18083 3.28852 3.32950 3.36157 3.91256 4.10475 4.27910 4.75554 4.85419 4.91403 4.99990 5.06142 5.09405 5.27196 5.34584 5.46928 5.57882 5.70106 5.85243 5.94811 6.04280 6.09707 6.13949 6.21174 6.23962 6.38243 6.45030 6.55653 6.67789 6.74513 6.98716 7.18778 7.43233 7.61791 7.64829 8.37093 8.80594 9.36896 10.87422 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.017166 B = 0.003849 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.734735 B = 7273.801500 C = 7761.554708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.233 3.767 3 H 0.055 0.945 4 C -0.518 4.518 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.888 5.888 8 Si 0.857 3.143 9 H -0.268 1.268 10 H -0.259 1.259 11 H -0.284 1.284 12 N -0.986 5.986 13 C 0.106 3.894 14 S 2.771 3.229 15 O -0.987 6.987 16 O -0.983 6.983 17 N -1.006 6.006 18 C 0.083 3.917 19 C 0.139 3.861 20 C -0.069 4.069 21 C 0.063 3.937 22 N -0.469 5.469 23 C 0.041 3.959 24 C -0.266 4.266 25 S 0.117 5.883 26 H 0.054 0.946 27 H 0.027 0.973 28 H 0.053 0.947 29 H 0.267 0.733 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.176 0.824 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.824 -3.376 -11.978 16.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.130 3.870 3 H 0.073 0.927 4 C -0.558 4.558 5 H 0.100 0.900 6 C -0.125 4.125 7 N -0.525 5.525 8 Si 0.683 3.317 9 H -0.193 1.193 10 H -0.183 1.183 11 H -0.210 1.210 12 N -0.828 5.828 13 C -0.040 4.040 14 S 2.782 3.218 15 O -0.971 6.971 16 O -0.968 6.968 17 N -0.843 5.843 18 C -0.062 4.062 19 C 0.011 3.989 20 C -0.112 4.112 21 C -0.215 4.215 22 N -0.183 5.183 23 C -0.110 4.110 24 C -0.405 4.405 25 S 0.370 5.630 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.193 0.807 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 10.792 -2.353 -12.054 16.349 hybrid contribution 0.072 -0.081 -0.116 0.159 sum 10.863 -2.434 -12.170 16.493 Atomic orbital electron populations 1.22175 0.97936 1.01180 0.99129 1.19090 0.91823 0.92851 0.83285 0.92686 1.21195 1.43863 0.96034 0.94701 0.89970 1.24958 0.94109 0.98075 0.95356 1.69882 1.44525 1.35952 1.02188 0.87172 0.80215 0.86554 0.77754 1.19340 1.18341 1.21011 1.57955 1.64366 1.21475 1.38958 1.21218 0.99084 0.81802 1.01943 1.02286 0.72568 0.73514 0.73449 1.93569 1.85757 1.75992 1.41754 1.93551 1.83774 1.32461 1.86974 1.57884 1.30637 1.35506 1.60290 1.21605 0.98427 0.92409 0.93801 1.21080 0.95973 0.87985 0.93905 1.20850 0.98634 0.92213 0.99532 1.27002 0.96052 1.00691 0.97798 1.66318 1.34566 1.03871 1.13593 1.21866 0.89556 0.97945 1.01647 1.27083 1.04142 1.04763 1.04511 1.84065 1.16005 1.22233 1.40674 0.92687 0.95342 0.92819 0.92348 0.93785 0.92994 0.90070 0.91320 0.91405 0.90377 0.90018 0.89587 0.87874 0.89066 0.80742 0.80652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.09 37.16 0.34 -2.68 16 2 C 0.23 5.31 2.25 -69.08 -0.16 5.15 16 3 H 0.06 1.32 4.13 -51.93 -0.21 1.11 16 4 C -0.52 -13.19 8.73 -34.44 -0.30 -13.49 16 5 H 0.08 2.24 6.82 -52.49 -0.36 1.88 16 6 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -25.00 13.96 55.43 0.77 -24.23 16 8 Si 0.86 20.17 26.88 -169.99 -4.57 15.60 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.26 -6.00 6.71 56.52 0.38 -5.62 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.99 -20.05 3.12 -115.85 -0.36 -20.42 16 13 C 0.11 1.87 9.45 59.85 0.57 2.43 16 14 S 2.77 54.40 6.01 -107.50 -0.65 53.76 16 15 O -0.99 -20.01 16.18 -57.17 -0.93 -20.93 16 16 O -0.98 -21.64 15.31 -57.17 -0.88 -22.52 16 17 N -1.01 -16.52 3.24 -121.76 -0.39 -16.92 16 18 C 0.08 1.27 10.68 59.85 0.64 1.91 16 19 C 0.14 1.94 5.31 -4.04 -0.02 1.92 16 20 C -0.07 -0.87 6.12 -27.88 -0.17 -1.04 16 21 C 0.06 0.78 6.64 -13.46 -0.09 0.69 16 22 N -0.47 -6.38 10.54 -11.86 -0.13 -6.51 16 23 C 0.04 0.43 11.35 -19.19 -0.22 0.22 16 24 C -0.27 -2.36 11.37 29.12 0.33 -2.03 16 25 S 0.12 1.13 23.18 -107.50 -2.49 -1.36 16 26 H 0.05 1.14 7.91 -51.93 -0.41 0.73 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.05 7.86 -51.93 -0.41 0.65 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.82 7.44 -51.93 -0.39 0.44 16 32 H 0.08 1.47 6.56 -51.93 -0.34 1.13 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.08 1.25 7.02 -51.93 -0.36 0.89 16 36 H 0.08 1.01 8.11 -51.93 -0.42 0.58 16 37 H 0.09 1.27 7.26 -51.93 -0.38 0.90 16 38 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -31.69 362.12 -9.15 -40.84 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.82 Total: 2.13 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 0.82 Total: -4.90 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -0.11 Total: -68.07 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.80 Total: -43.45 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.57 Total: 15.60 kcal Atomic # 16 Polarization: 55.53 SS G_CDS: -3.14 Total: 52.39 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.69 -9.15 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282356958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.036 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds