Wall clock time and date at job start Tue Mar 31 2020 18:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47116 * 2 1 4 4 C 1.50705 * 109.47249 * 119.99895 * 2 1 3 5 5 H 1.07998 * 119.99972 * 85.01580 * 4 2 1 6 6 C 1.37876 * 119.99911 * 265.02257 * 4 2 1 7 7 N 1.31513 * 119.99752 * 176.79959 * 6 4 2 8 8 Si 1.86793 * 120.00278 * 356.79391 * 6 4 2 9 9 H 1.48504 * 109.47194 * 274.91241 * 8 6 4 10 10 H 1.48504 * 109.47343 * 34.90823 * 8 6 4 11 11 H 1.48497 * 109.47457 * 154.91386 * 8 6 4 12 12 N 1.46503 * 109.47231 * 239.99765 * 2 1 3 13 13 C 1.46503 * 119.99980 * 300.00070 * 12 2 1 14 14 S 1.65594 * 120.00062 * 119.99851 * 12 2 1 15 15 O 1.42098 * 106.40592 * 203.54360 * 14 12 2 16 16 O 1.42109 * 106.40161 * 336.46203 * 14 12 2 17 17 N 1.65597 * 107.21952 * 90.00044 * 14 12 2 18 18 C 1.46503 * 120.00273 * 270.00241 * 17 14 12 19 19 C 1.46502 * 119.99577 * 89.99926 * 17 14 12 20 20 C 1.52999 * 109.46891 * 95.00698 * 19 17 14 21 21 C 1.50704 * 109.47181 * 180.02562 * 20 19 17 22 22 N 1.29024 * 124.91958 * 89.68731 * 21 20 19 23 23 C 1.31780 * 117.12537 * 179.81484 * 22 21 20 24 24 C 1.33640 * 114.49938 * 0.47283 * 23 22 21 25 25 S 1.70972 * 124.91145 * 269.99783 * 21 20 19 26 26 H 1.09003 * 109.47088 * 305.58229 * 1 2 3 27 27 H 1.08992 * 109.47435 * 65.58896 * 1 2 3 28 28 H 1.09003 * 109.47363 * 185.59080 * 1 2 3 29 29 H 0.97005 * 120.00234 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.46793 * 89.99374 * 13 12 2 31 31 H 1.08992 * 109.47307 * 209.99528 * 13 12 2 32 32 H 1.09001 * 109.47136 * 329.99861 * 13 12 2 33 33 H 1.09000 * 109.46733 * 89.99880 * 18 17 14 34 34 H 1.08997 * 109.46798 * 209.99943 * 18 17 14 35 35 H 1.08992 * 109.46810 * 330.00138 * 18 17 14 36 36 H 1.09004 * 109.46846 * 215.00149 * 19 17 14 37 37 H 1.09000 * 109.47450 * 335.00387 * 19 17 14 38 38 H 1.09004 * 109.46927 * 299.99401 * 20 19 17 39 39 H 1.08996 * 109.47781 * 59.99813 * 20 19 17 40 40 H 1.07998 * 122.75452 * 180.23007 * 23 22 21 41 41 H 1.07998 * 126.04007 * 179.71497 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.1357 -1.7854 1.2290 6 6 2.3598 0.0121 2.3582 7 7 2.7381 -0.6121 3.4522 8 14 2.2664 1.8775 2.3322 9 1 3.5328 2.4290 1.7868 10 1 1.1312 2.3044 1.4753 11 1 2.0612 2.3822 3.7136 12 7 2.0183 -0.6907 -1.1962 13 6 1.6644 -2.0933 -1.4279 14 16 2.9703 0.1141 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6903 1.4972 -2.1193 17 7 4.5437 -0.1043 -1.8180 18 6 5.1725 0.8458 -0.8969 19 6 5.3068 -1.2475 -2.3249 20 6 6.1144 -0.8181 -3.5514 21 6 6.8989 -1.9943 -4.0732 22 7 6.4702 -2.8371 -4.9510 23 6 7.2886 -3.8089 -5.3008 24 6 8.4701 -3.7902 -4.6764 25 16 8.4832 -2.4092 -3.5822 26 1 -0.3633 0.5980 0.8358 27 1 -0.3634 0.4247 -0.9357 28 1 -0.3634 -1.0228 0.1001 29 1 2.9681 -0.1039 4.2458 30 1 0.7375 -2.1444 -1.9992 31 1 2.4628 -2.5820 -1.9863 32 1 1.5295 -2.5969 -0.4707 33 1 5.0124 0.5165 0.1297 34 1 6.2422 0.8950 -1.1002 35 1 4.7305 1.8324 -1.0351 36 1 5.9852 -1.6039 -1.5497 37 1 4.6208 -2.0475 -2.6034 38 1 5.4360 -0.4617 -4.3266 39 1 6.8004 -0.0181 -3.2730 40 1 7.0248 -4.5612 -6.0294 41 1 9.2744 -4.4970 -4.8171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282356958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:49 Heat of formation + Delta-G solvation = -45.393668 kcal Electronic energy + Delta-G solvation = -25507.095761 eV Core-core repulsion = 21868.348816 eV Total energy + Delta-G solvation = -3638.746945 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 333.097 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.63306 -38.48474 -37.99949 -37.80583 -36.94226 -34.47522 -33.53364 -31.68696 -30.10242 -27.60788 -27.33217 -27.01732 -25.52853 -23.58069 -22.39592 -20.87938 -19.92036 -19.25441 -19.02857 -18.57932 -18.31660 -17.50086 -16.67554 -16.44194 -15.93757 -15.54548 -15.39995 -15.32824 -14.84225 -14.78277 -14.48120 -14.40465 -14.30268 -13.82520 -13.66400 -13.54128 -13.43728 -13.29652 -13.14316 -13.07599 -12.98807 -12.58769 -12.57303 -12.45670 -12.40402 -12.15690 -11.92174 -11.76902 -11.26923 -10.72936 -10.60576 -10.42544 -10.17949 -9.78838 -9.66117 -8.28564 -6.32131 -0.42658 -0.23204 0.43298 0.81660 1.33189 1.39586 1.47933 1.83122 1.91445 2.33249 2.45529 3.08397 3.16290 3.33000 3.70858 3.95398 4.01771 4.04967 4.27617 4.40329 4.41910 4.48846 4.54896 4.62044 4.65969 4.69087 4.75909 4.83159 4.91817 4.96128 4.98907 5.04982 5.09362 5.24176 5.28402 5.44493 5.51220 5.57796 5.95324 6.36182 6.73802 6.83140 7.33230 8.86406 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.017166 B = 0.003849 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.734735 B = 7273.801500 C = 7761.554708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.235 3.765 3 H 0.046 0.954 4 C -0.510 4.510 5 H 0.056 0.944 6 C 0.037 3.963 7 N -0.931 5.931 8 Si 0.896 3.104 9 H -0.255 1.255 10 H -0.253 1.253 11 H -0.282 1.282 12 N -0.994 5.994 13 C 0.102 3.898 14 S 2.781 3.219 15 O -0.995 6.995 16 O -1.008 7.008 17 N -1.003 6.003 18 C 0.079 3.921 19 C 0.135 3.865 20 C -0.065 4.065 21 C 0.033 3.967 22 N -0.506 5.506 23 C 0.017 3.983 24 C -0.251 4.251 25 S 0.156 5.844 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.268 0.732 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.194 0.806 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.458 -3.372 -13.003 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.130 3.870 3 H 0.063 0.937 4 C -0.550 4.550 5 H 0.074 0.926 6 C -0.163 4.163 7 N -0.570 5.570 8 Si 0.720 3.280 9 H -0.180 1.180 10 H -0.177 1.177 11 H -0.208 1.208 12 N -0.835 5.835 13 C -0.044 4.044 14 S 2.792 3.208 15 O -0.979 6.979 16 O -0.992 6.992 17 N -0.842 5.842 18 C -0.066 4.066 19 C 0.008 3.992 20 C -0.107 4.107 21 C -0.245 4.245 22 N -0.221 5.221 23 C -0.133 4.133 24 C -0.390 4.390 25 S 0.409 5.591 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.211 0.789 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 12.410 -2.355 -13.094 18.193 hybrid contribution -0.334 -0.220 0.119 0.418 sum 12.076 -2.575 -12.975 17.911 Atomic orbital electron populations 1.22145 0.96526 1.01886 0.99955 1.18933 0.92953 0.92101 0.82974 0.93650 1.21283 1.42984 0.94942 0.95747 0.92569 1.25515 0.94168 1.01542 0.95073 1.69984 1.46683 1.37419 1.02957 0.86514 0.80987 0.82540 0.77931 1.17956 1.17706 1.20764 1.57841 1.65186 1.22414 1.38107 1.21359 1.00516 0.80540 1.01965 1.01810 0.73107 0.72770 0.73150 1.93557 1.86249 1.76013 1.42108 1.93513 1.84549 1.33899 1.87259 1.57663 1.29638 1.36481 1.60437 1.21730 1.00942 0.91458 0.92444 1.21256 0.95939 0.86810 0.95225 1.20741 0.98695 0.93256 0.98039 1.26897 0.97776 1.00962 0.98828 1.66298 1.36422 1.04921 1.14498 1.22202 0.90079 0.98191 1.02853 1.27532 1.04204 1.04420 1.02803 1.83876 1.13386 1.21955 1.39907 0.92889 0.93689 0.92047 0.92314 0.92174 0.91462 0.90923 0.93247 0.87073 0.91172 0.88079 0.90837 0.90002 0.86655 0.78948 0.77421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.92 9.09 71.98 0.65 -5.27 16 2 C 0.24 10.60 2.25 44.25 0.10 10.70 16 3 H 0.05 2.15 4.13 -2.39 -0.01 2.14 16 4 C -0.51 -26.18 8.73 25.60 0.22 -25.96 16 5 H 0.06 3.14 6.82 -2.91 -0.02 3.12 16 6 C 0.04 1.98 5.47 84.65 0.46 2.44 16 7 N -0.93 -53.22 13.96 21.45 0.30 -52.92 16 8 Si 0.90 41.02 26.88 68.60 1.84 42.86 16 9 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 10 H -0.25 -11.26 6.71 99.48 0.67 -10.59 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 N -0.99 -39.95 3.12 -520.45 -1.62 -41.58 16 13 C 0.10 3.53 9.45 127.77 1.21 4.74 16 14 S 2.78 107.56 6.01 -56.49 -0.34 107.22 16 15 O -1.00 -39.87 16.18 -128.00 -2.07 -41.94 16 16 O -1.01 -43.79 15.31 -128.00 -1.96 -45.75 16 17 N -1.00 -31.93 3.24 -539.13 -1.75 -33.67 16 18 C 0.08 2.31 10.68 127.77 1.36 3.67 16 19 C 0.13 3.62 5.31 86.38 0.46 4.08 16 20 C -0.06 -1.55 6.12 29.85 0.18 -1.36 16 21 C 0.03 0.77 6.64 88.52 0.59 1.36 16 22 N -0.51 -13.31 10.54 -191.45 -2.02 -15.33 16 23 C 0.02 0.33 11.35 83.66 0.95 1.28 16 24 C -0.25 -3.70 11.37 66.78 0.76 -2.94 16 25 S 0.16 2.59 23.18 -56.49 -1.31 1.28 16 26 H 0.05 2.15 7.91 -2.39 -0.02 2.13 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 2.36 7.86 -2.39 -0.02 2.34 16 29 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 2.10 7.44 -2.39 -0.02 2.08 16 32 H 0.07 2.64 6.56 -2.39 -0.02 2.62 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.11 2.23 8.07 -2.39 -0.02 2.21 16 35 H 0.07 2.17 7.02 -2.39 -0.02 2.15 16 36 H 0.10 2.30 8.11 -2.39 -0.02 2.28 16 37 H 0.07 2.15 7.26 -2.39 -0.02 2.13 16 38 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.19 2.73 8.06 -2.91 -0.02 2.71 16 41 H 0.21 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -68.43 362.12 -0.98 -69.41 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.99 Total: 17.67 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 6.95 Total: -7.26 kcal Atomic # 7 Polarization: -138.41 SS G_CDS: -5.09 Total: -143.50 kcal Atomic # 8 Polarization: -83.66 SS G_CDS: -4.03 Total: -87.69 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.84 Total: 42.86 kcal Atomic # 16 Polarization: 110.15 SS G_CDS: -1.65 Total: 108.50 kcal Total: -68.43 -0.98 -69.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282356958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.020 kcal (2) G-P(sol) polarization free energy of solvation -68.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds