Wall clock time and date at job start Tue Mar 31 2020 17:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46826 * 2 1 4 4 C 1.50701 * 109.47186 * 240.00201 * 2 1 3 5 5 H 1.07996 * 119.99752 * 240.83731 * 4 2 1 6 6 C 1.37882 * 120.00136 * 60.83103 * 4 2 1 7 7 N 1.31505 * 120.00002 * 194.58163 * 6 4 2 8 8 Si 1.86799 * 119.99781 * 14.58174 * 6 4 2 9 9 H 1.48500 * 109.47061 * 84.45134 * 8 6 4 10 10 H 1.48506 * 109.46886 * 204.45183 * 8 6 4 11 11 H 1.48499 * 109.47237 * 324.45323 * 8 6 4 12 12 C 1.52994 * 109.47273 * 119.99759 * 2 1 3 13 13 S 1.81398 * 109.47311 * 300.00327 * 12 2 1 14 14 O 1.42099 * 110.54644 * 68.37331 * 13 12 2 15 15 O 1.42099 * 110.54003 * 291.62299 * 13 12 2 16 16 N 1.65601 * 104.45045 * 179.97438 * 13 12 2 17 17 C 1.46502 * 120.00145 * 65.27249 * 16 13 12 18 18 C 1.50692 * 109.47274 * 164.72455 * 17 16 13 19 19 C 1.38262 * 119.96556 * 269.72273 * 18 17 16 20 20 C 1.38216 * 120.07159 * 179.76449 * 19 18 17 21 21 C 1.38409 * 119.99778 * 0.51497 * 20 19 18 22 22 F 1.35097 * 120.03900 * 179.71807 * 21 20 19 23 23 C 1.38655 * 119.92872 * 359.74090 * 21 20 19 24 24 F 1.35101 * 120.03465 * 180.02562 * 23 21 20 25 25 C 1.38210 * 119.96655 * 90.00323 * 18 17 16 26 26 H 1.08995 * 109.47021 * 310.22993 * 1 2 3 27 27 H 1.09003 * 109.47086 * 70.23190 * 1 2 3 28 28 H 1.09003 * 109.46824 * 190.23231 * 1 2 3 29 29 H 1.08997 * 109.46876 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46843 * 299.99627 * 3 2 1 31 31 H 1.08994 * 109.46972 * 59.99792 * 3 2 1 32 32 H 0.97003 * 120.00225 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.47180 * 179.97438 * 12 2 1 34 34 H 1.09001 * 109.47134 * 60.00216 * 12 2 1 35 35 H 0.96995 * 119.99983 * 244.99911 * 16 13 12 36 36 H 1.08997 * 109.47349 * 284.73038 * 17 16 13 37 37 H 1.09007 * 109.47050 * 44.72217 * 17 16 13 38 38 H 1.08001 * 119.96089 * 0.02644 * 19 18 17 39 39 H 1.07998 * 119.99929 * 180.25521 * 20 19 18 40 40 H 1.08001 * 119.99613 * 359.95745 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6421 -1.5963 -1.1314 6 6 1.7135 -0.2294 -2.4827 7 7 1.8968 -0.9847 -3.5435 8 14 1.0211 1.4952 -2.6723 9 1 2.1370 2.4737 -2.7240 10 1 0.2326 1.5767 -3.9281 11 1 0.1433 1.8061 -1.5156 12 6 2.0400 -0.7212 1.2492 13 16 1.4354 0.1339 2.7303 14 8 0.0280 -0.0183 2.8544 15 8 2.0480 1.4101 2.8543 16 7 2.0531 -0.7407 3.9936 17 6 3.5011 -0.7932 4.2095 18 6 3.7839 -1.3166 5.5940 19 6 3.8960 -0.4373 6.6552 20 6 4.1505 -0.9154 7.9268 21 6 4.3041 -2.2748 8.1372 22 9 4.5586 -2.7425 9.3788 23 6 4.1970 -3.1561 7.0721 24 9 4.3460 -4.4834 7.2751 25 6 3.9368 -2.6745 5.8008 26 1 -0.3633 0.6637 0.7845 27 1 -0.3633 0.3476 -0.9671 28 1 -0.3633 -1.0114 0.1826 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6729 -0.6462 -4.4246 33 1 3.1301 -0.7215 1.2490 34 1 1.6768 -1.7488 1.2492 35 1 1.4559 -1.2151 4.5929 36 1 3.9549 -1.4544 3.4713 37 1 3.9203 0.2078 4.1068 38 1 3.7803 0.6238 6.4909 39 1 4.2337 -0.2279 8.7555 40 1 3.8529 -3.3600 4.9704 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295496741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:50 Heat of formation + Delta-G solvation = -121.593555 kcal Electronic energy + Delta-G solvation = -26513.401671 eV Core-core repulsion = 22285.217313 eV Total energy + Delta-G solvation = -4228.184358 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.100 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.82308 -48.89792 -39.66924 -36.81081 -36.77725 -35.64613 -35.36808 -31.99346 -31.42547 -30.84672 -27.49196 -26.42508 -26.01612 -25.05020 -23.68620 -22.16644 -20.03556 -18.96358 -18.40897 -17.79858 -17.55749 -17.23448 -16.67420 -16.33434 -16.17139 -15.66073 -15.31056 -15.27379 -14.94703 -14.82390 -14.71381 -14.30066 -13.81025 -13.47648 -13.21799 -13.07693 -12.95423 -12.73818 -12.51188 -12.34625 -12.18937 -11.80471 -11.68729 -11.61372 -11.46636 -11.15849 -11.06791 -10.82056 -10.22044 -10.11616 -10.09673 -9.59831 -9.53676 -9.13767 -9.04759 -8.78796 -8.51434 -6.23287 -4.21061 0.32053 0.54464 0.68611 2.74779 3.13958 3.22218 3.31247 3.34999 3.36184 3.89440 4.00804 4.06527 4.18604 4.30498 4.52932 4.53232 4.65688 4.99168 5.04269 5.07051 5.28479 5.30130 5.39208 5.44166 5.46181 5.55970 5.66331 5.91938 5.93900 6.14722 6.26841 6.29067 6.38844 6.44394 6.65037 6.82004 6.88206 7.08767 7.26747 7.58190 8.34207 8.79245 9.40568 10.89205 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.025869 B = 0.002760 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.136384 B =10140.857464 C =10627.608375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.055 3.945 3 C -0.182 4.182 4 C -0.510 4.510 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.888 5.888 8 Si 0.874 3.126 9 H -0.281 1.281 10 H -0.301 1.301 11 H -0.246 1.246 12 C -0.574 4.574 13 S 2.590 3.410 14 O -0.960 6.960 15 O -0.963 6.963 16 N -1.126 6.126 17 C 0.154 3.846 18 C -0.076 4.076 19 C -0.081 4.081 20 C -0.127 4.127 21 C 0.070 3.930 22 F -0.129 7.129 23 C 0.066 3.934 24 F -0.128 7.128 25 C -0.109 4.109 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.266 0.734 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.415 0.585 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.084 -0.978 21.063 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.052 3.948 3 C -0.239 4.239 4 C -0.548 4.548 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.524 5.524 8 Si 0.705 3.295 9 H -0.208 1.208 10 H -0.229 1.229 11 H -0.172 1.172 12 C -0.707 4.707 13 S 2.687 3.313 14 O -0.951 6.951 15 O -0.952 6.952 16 N -0.883 5.883 17 C 0.028 3.972 18 C -0.078 4.078 19 C -0.100 4.100 20 C -0.145 4.145 21 C 0.049 3.951 22 F -0.108 7.108 23 C 0.046 3.954 24 F -0.106 7.106 25 C -0.129 4.129 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.248 0.752 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.674 -0.197 20.906 21.423 hybrid contribution -0.027 -0.286 0.004 0.287 sum 4.648 -0.483 20.910 21.426 Atomic orbital electron populations 1.22689 0.97016 1.01365 1.01799 1.18231 0.92521 0.91723 0.92354 1.22824 1.02375 0.97842 1.00830 1.20647 1.34034 1.12628 0.87516 0.90370 1.24967 0.94526 0.97301 0.95798 1.69930 1.47790 1.35784 0.98934 0.87440 0.79809 0.85648 0.76553 1.20784 1.22916 1.17175 1.30376 1.11826 1.13143 1.15400 1.05722 0.74517 0.75251 0.75763 1.93581 1.29219 1.86561 1.85691 1.93545 1.78152 1.38050 1.85499 1.55886 1.13389 1.71373 1.47659 1.20231 0.81307 1.02852 0.92811 1.19776 0.99599 0.92325 0.96083 1.21160 0.96885 1.01121 0.90795 1.21128 1.01532 0.92682 0.99204 1.17777 1.05153 0.92632 0.79504 1.91538 1.91585 1.89096 1.38537 1.17658 1.06123 0.77863 0.93772 1.91550 1.93266 1.30170 1.95622 1.21106 1.00018 0.96345 0.95424 0.94439 0.91422 0.92304 0.91739 0.93002 0.93171 0.92372 0.85647 0.85314 0.75175 0.90004 0.88500 0.83555 0.83379 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 6.95 37.16 0.26 -3.46 16 2 C 0.05 1.19 0.52 -155.66 -0.08 1.11 16 3 C -0.18 -3.88 7.22 37.16 0.27 -3.61 16 4 C -0.51 -13.25 8.62 -34.44 -0.30 -13.54 16 5 H 0.08 2.15 7.99 -52.49 -0.42 1.73 16 6 C 0.08 2.12 5.31 -17.82 -0.09 2.03 16 7 N -0.89 -25.94 13.96 55.43 0.77 -25.17 16 8 Si 0.87 21.02 22.79 -169.99 -3.87 17.14 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.25 -5.52 4.67 56.52 0.26 -5.26 16 12 C -0.57 -9.56 5.00 37.15 0.19 -9.38 16 13 S 2.59 39.84 4.50 -107.50 -0.48 39.36 16 14 O -0.96 -17.44 15.93 -57.54 -0.92 -18.35 16 15 O -0.96 -16.78 15.11 -57.54 -0.87 -17.65 16 16 N -1.13 -11.91 5.88 -11.66 -0.07 -11.97 16 17 C 0.15 1.31 6.26 -5.20 -0.03 1.28 16 18 C -0.08 -0.59 5.28 -104.63 -0.55 -1.14 16 19 C -0.08 -0.57 9.70 -39.58 -0.38 -0.95 16 20 C -0.13 -0.88 10.02 -39.53 -0.40 -1.28 16 21 C 0.07 0.62 7.31 -39.36 -0.29 0.34 16 22 F -0.13 -1.30 17.18 2.25 0.04 -1.26 16 23 C 0.07 0.61 7.31 -39.37 -0.29 0.32 16 24 F -0.13 -1.35 17.18 2.25 0.04 -1.31 16 25 C -0.11 -0.86 9.68 -39.53 -0.38 -1.24 16 26 H 0.04 0.76 6.21 -51.93 -0.32 0.44 16 27 H 0.07 1.53 4.32 -51.93 -0.22 1.30 16 28 H 0.06 1.20 8.11 -51.93 -0.42 0.78 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.05 1.16 2.28 -51.93 -0.12 1.04 16 31 H 0.05 0.99 5.46 -51.93 -0.28 0.71 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.13 1.81 8.14 -51.92 -0.42 1.38 16 34 H 0.13 1.95 8.14 -51.92 -0.42 1.53 16 35 H 0.41 3.78 8.61 -34.47 -0.30 3.48 16 36 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 37 H 0.10 0.80 7.62 -51.92 -0.40 0.41 16 38 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -32.98 336.15 -7.09 -40.07 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.71 Total: 3.63 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: -2.08 Total: -29.53 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.71 Total: -37.14 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.79 Total: -36.01 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.08 Total: -2.58 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -3.87 Total: 17.14 kcal Atomic # 16 Polarization: 39.84 SS G_CDS: -0.48 Total: 39.36 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.98 -7.09 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295496741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.524 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds