Wall clock time and date at job start Tue Mar 31 2020 17:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46826 * 2 1 4 4 C 1.50701 * 109.47186 * 240.00201 * 2 1 3 5 5 H 1.07996 * 119.99752 * 240.83731 * 4 2 1 6 6 C 1.37882 * 120.00136 * 60.83103 * 4 2 1 7 7 N 1.31505 * 120.00002 * 194.58163 * 6 4 2 8 8 Si 1.86799 * 119.99781 * 14.58174 * 6 4 2 9 9 H 1.48500 * 109.47061 * 84.45134 * 8 6 4 10 10 H 1.48506 * 109.46886 * 204.45183 * 8 6 4 11 11 H 1.48499 * 109.47237 * 324.45323 * 8 6 4 12 12 C 1.52994 * 109.47273 * 119.99759 * 2 1 3 13 13 S 1.81398 * 109.47311 * 300.00327 * 12 2 1 14 14 O 1.42099 * 110.54644 * 68.37331 * 13 12 2 15 15 O 1.42099 * 110.54003 * 291.62299 * 13 12 2 16 16 N 1.65601 * 104.45045 * 179.97438 * 13 12 2 17 17 C 1.46502 * 120.00145 * 65.27249 * 16 13 12 18 18 C 1.50692 * 109.47274 * 164.72455 * 17 16 13 19 19 C 1.38262 * 119.96556 * 269.72273 * 18 17 16 20 20 C 1.38216 * 120.07159 * 179.76449 * 19 18 17 21 21 C 1.38409 * 119.99778 * 0.51497 * 20 19 18 22 22 F 1.35097 * 120.03900 * 179.71807 * 21 20 19 23 23 C 1.38655 * 119.92872 * 359.74090 * 21 20 19 24 24 F 1.35101 * 120.03465 * 180.02562 * 23 21 20 25 25 C 1.38210 * 119.96655 * 90.00323 * 18 17 16 26 26 H 1.08995 * 109.47021 * 310.22993 * 1 2 3 27 27 H 1.09003 * 109.47086 * 70.23190 * 1 2 3 28 28 H 1.09003 * 109.46824 * 190.23231 * 1 2 3 29 29 H 1.08997 * 109.46876 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46843 * 299.99627 * 3 2 1 31 31 H 1.08994 * 109.46972 * 59.99792 * 3 2 1 32 32 H 0.97003 * 120.00225 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.47180 * 179.97438 * 12 2 1 34 34 H 1.09001 * 109.47134 * 60.00216 * 12 2 1 35 35 H 0.96995 * 119.99983 * 244.99911 * 16 13 12 36 36 H 1.08997 * 109.47349 * 284.73038 * 17 16 13 37 37 H 1.09007 * 109.47050 * 44.72217 * 17 16 13 38 38 H 1.08001 * 119.96089 * 0.02644 * 19 18 17 39 39 H 1.07998 * 119.99929 * 180.25521 * 20 19 18 40 40 H 1.08001 * 119.99613 * 359.95745 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6421 -1.5963 -1.1314 6 6 1.7135 -0.2294 -2.4827 7 7 1.8968 -0.9847 -3.5435 8 14 1.0211 1.4952 -2.6723 9 1 2.1370 2.4737 -2.7240 10 1 0.2326 1.5767 -3.9281 11 1 0.1433 1.8061 -1.5156 12 6 2.0400 -0.7212 1.2492 13 16 1.4354 0.1339 2.7303 14 8 0.0280 -0.0183 2.8544 15 8 2.0480 1.4101 2.8543 16 7 2.0531 -0.7407 3.9936 17 6 3.5011 -0.7932 4.2095 18 6 3.7839 -1.3166 5.5940 19 6 3.8960 -0.4373 6.6552 20 6 4.1505 -0.9154 7.9268 21 6 4.3041 -2.2748 8.1372 22 9 4.5586 -2.7425 9.3788 23 6 4.1970 -3.1561 7.0721 24 9 4.3460 -4.4834 7.2751 25 6 3.9368 -2.6745 5.8008 26 1 -0.3633 0.6637 0.7845 27 1 -0.3633 0.3476 -0.9671 28 1 -0.3633 -1.0114 0.1826 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6729 -0.6462 -4.4246 33 1 3.1301 -0.7215 1.2490 34 1 1.6768 -1.7488 1.2492 35 1 1.4559 -1.2151 4.5929 36 1 3.9549 -1.4544 3.4713 37 1 3.9203 0.2078 4.1068 38 1 3.7803 0.6238 6.4909 39 1 4.2337 -0.2279 8.7555 40 1 3.8529 -3.3600 4.9704 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295496741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:49 Heat of formation + Delta-G solvation = -145.008441 kcal Electronic energy + Delta-G solvation = -26514.417016 eV Core-core repulsion = 22285.217313 eV Total energy + Delta-G solvation = -4229.199703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.100 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.53365 -49.61875 -40.27161 -38.45679 -38.09978 -36.91109 -36.22062 -34.01839 -32.03588 -31.51949 -28.92817 -28.10680 -27.08654 -26.67350 -24.26877 -22.81602 -21.62418 -20.22649 -19.14594 -18.82717 -18.24840 -18.16327 -18.02397 -17.38655 -17.29494 -17.03844 -16.82960 -16.04490 -15.97527 -15.55540 -15.42848 -15.03282 -14.98058 -14.92008 -14.72038 -14.51242 -14.14073 -14.09369 -13.75490 -13.47999 -13.17576 -13.03440 -12.92288 -12.73287 -12.61830 -12.59865 -12.53587 -12.21802 -11.96781 -11.81378 -11.75915 -10.96032 -10.65971 -10.54523 -10.30557 -10.11721 -9.76265 -8.32855 -6.32000 -0.67862 -0.17199 -0.01760 1.32271 1.37455 1.45115 1.85243 2.31766 2.38676 2.74272 2.83539 3.02187 3.23457 3.33445 3.46156 3.60139 3.79430 3.97389 4.08179 4.13774 4.28602 4.36820 4.45076 4.56174 4.65076 4.73147 4.75376 4.78967 4.82276 4.88517 4.90762 5.00273 5.02364 5.20480 5.34307 5.43905 5.56867 5.66438 5.69770 6.09432 6.28943 6.72005 7.32750 8.82966 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.025869 B = 0.002760 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.136384 B =10140.857464 C =10627.608375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.044 3.956 3 C -0.187 4.187 4 C -0.502 4.502 5 H 0.051 0.949 6 C 0.025 3.975 7 N -0.937 5.937 8 Si 0.917 3.083 9 H -0.275 1.275 10 H -0.310 1.310 11 H -0.220 1.220 12 C -0.586 4.586 13 S 2.619 3.381 14 O -0.988 6.988 15 O -0.980 6.980 16 N -1.110 6.110 17 C 0.143 3.857 18 C -0.076 4.076 19 C -0.076 4.076 20 C -0.120 4.120 21 C 0.055 3.945 22 F -0.140 7.140 23 C 0.045 3.955 24 F -0.141 7.141 25 C -0.106 4.106 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.265 0.735 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.424 0.576 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.165 0.835 39 H 0.171 0.829 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 0.336 23.020 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.042 3.958 3 C -0.244 4.244 4 C -0.541 4.541 5 H 0.070 0.930 6 C -0.174 4.174 7 N -0.577 5.577 8 Si 0.746 3.254 9 H -0.202 1.202 10 H -0.239 1.239 11 H -0.145 1.145 12 C -0.718 4.718 13 S 2.715 3.285 14 O -0.978 6.978 15 O -0.969 6.969 16 N -0.871 5.871 17 C 0.018 3.982 18 C -0.078 4.078 19 C -0.095 4.095 20 C -0.138 4.138 21 C 0.034 3.966 22 F -0.119 7.119 23 C 0.025 3.975 24 F -0.120 7.120 25 C -0.125 4.125 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.260 0.740 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.183 0.817 39 H 0.189 0.811 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.813 1.120 22.876 23.403 hybrid contribution 0.002 -0.772 -0.499 0.919 sum 4.815 0.348 22.377 22.892 Atomic orbital electron populations 1.22711 0.97068 1.02120 1.01535 1.18208 0.92575 0.92265 0.92798 1.22850 1.03171 0.97335 1.01046 1.20974 1.32262 1.11594 0.89254 0.93027 1.25679 0.95461 1.00449 0.95796 1.70055 1.50504 1.37635 0.99474 0.86728 0.79833 0.81929 0.76881 1.20175 1.23886 1.14473 1.30412 1.13426 1.13541 1.14376 1.04611 0.73517 0.74821 0.75580 1.93543 1.31222 1.86951 1.86100 1.93521 1.78360 1.39294 1.85750 1.55438 1.14709 1.70942 1.46021 1.20531 0.79747 1.04050 0.93846 1.19727 0.99914 0.92228 0.95921 1.21432 0.95662 1.01995 0.90409 1.21369 1.00351 0.92035 1.00063 1.18074 1.05895 0.93536 0.79056 1.91506 1.91806 1.89357 1.39238 1.17907 1.07506 0.77439 0.94621 1.91510 1.93560 1.31179 1.95760 1.21235 0.99274 0.96785 0.95193 0.92973 0.92753 0.91775 0.90757 0.94128 0.91481 0.92585 0.83500 0.84155 0.73965 0.87982 0.87735 0.81703 0.81145 0.81762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.36 6.95 71.98 0.50 -6.86 16 2 C 0.04 1.83 0.52 -52.93 -0.03 1.81 16 3 C -0.19 -7.52 7.22 71.98 0.52 -7.00 16 4 C -0.50 -26.00 8.62 25.60 0.22 -25.78 16 5 H 0.05 2.88 7.99 -2.91 -0.02 2.85 16 6 C 0.02 1.36 5.31 84.66 0.45 1.81 16 7 N -0.94 -56.09 13.96 21.45 0.30 -55.79 16 8 Si 0.92 42.90 22.79 68.60 1.56 44.47 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.31 -14.81 7.11 99.48 0.71 -14.10 16 11 H -0.22 -9.34 4.67 99.48 0.46 -8.88 16 12 C -0.59 -18.01 5.00 71.98 0.36 -17.66 16 13 S 2.62 72.31 4.50 -56.49 -0.25 72.06 16 14 O -0.99 -33.19 15.93 -127.65 -2.03 -35.23 16 15 O -0.98 -30.75 15.11 -127.65 -1.93 -32.68 16 16 N -1.11 -19.57 5.88 -190.79 -1.12 -20.69 16 17 C 0.14 1.90 6.26 85.63 0.54 2.44 16 18 C -0.08 -0.93 5.28 -19.87 -0.10 -1.04 16 19 C -0.08 -0.81 9.70 22.27 0.22 -0.60 16 20 C -0.12 -1.36 10.02 22.31 0.22 -1.13 16 21 C 0.05 0.91 7.31 22.41 0.16 1.07 16 22 F -0.14 -2.75 17.18 44.97 0.77 -1.97 16 23 C 0.05 0.79 7.31 22.41 0.16 0.95 16 24 F -0.14 -2.96 17.18 44.97 0.77 -2.19 16 25 C -0.11 -1.43 9.68 22.30 0.22 -1.21 16 26 H 0.05 2.00 6.21 -2.39 -0.01 1.98 16 27 H 0.05 2.37 4.32 -2.39 -0.01 2.36 16 28 H 0.06 2.53 8.11 -2.39 -0.02 2.51 16 29 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.04 1.71 2.28 -2.38 -0.01 1.70 16 31 H 0.07 2.45 5.46 -2.39 -0.01 2.44 16 32 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.15 3.79 8.14 -2.39 -0.02 3.77 16 34 H 0.14 3.93 8.14 -2.39 -0.02 3.91 16 35 H 0.42 6.29 8.61 -96.75 -0.83 5.46 16 36 H 0.10 0.99 8.08 -2.39 -0.02 0.97 16 37 H 0.10 1.30 7.62 -2.38 -0.02 1.29 16 38 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 39 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -71.31 336.15 1.53 -69.77 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.02 Total: 15.45 kcal Atomic # 6 Polarization: -56.63 SS G_CDS: 3.44 Total: -53.20 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -0.82 Total: -76.48 kcal Atomic # 8 Polarization: -63.95 SS G_CDS: -3.96 Total: -67.91 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 1.55 Total: -4.16 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.56 Total: 44.47 kcal Atomic # 16 Polarization: 72.31 SS G_CDS: -0.25 Total: 72.06 kcal Total: -71.31 1.53 -69.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295496741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.234 kcal (2) G-P(sol) polarization free energy of solvation -71.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds