Wall clock time and date at job start Tue Mar 31 2020 17:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33645 * 126.03974 * 2 1 4 4 N 1.31778 * 114.49825 * 179.78635 * 3 2 1 5 5 C 1.29028 * 117.12496 * 0.51884 * 4 3 2 6 6 C 1.50709 * 124.91489 * 179.67912 * 5 4 3 7 7 H 1.09002 * 109.46787 * 165.04240 * 6 5 4 8 8 C 1.53006 * 109.46992 * 285.04096 * 6 5 4 9 9 N 1.46499 * 109.47159 * 45.04149 * 6 5 4 10 10 S 1.65598 * 119.99693 * 143.60337 * 9 6 5 11 11 O 1.42099 * 106.40218 * 51.20273 * 10 9 6 12 12 O 1.42099 * 106.39992 * 184.11604 * 10 9 6 13 13 N 1.65593 * 107.22046 * 297.65973 * 10 9 6 14 14 C 1.46502 * 119.99975 * 86.78771 * 13 10 9 15 15 C 1.46507 * 120.00054 * 266.78687 * 13 10 9 16 16 H 1.09004 * 109.46962 * 4.52017 * 15 13 10 17 17 C 1.53001 * 109.47334 * 244.51746 * 15 13 10 18 18 C 1.50699 * 109.47066 * 124.51736 * 15 13 10 19 19 H 1.08007 * 120.00159 * 5.07251 * 18 15 13 20 20 C 1.37878 * 119.99989 * 185.07499 * 18 15 13 21 21 N 1.31516 * 120.00057 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 120.00098 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.47204 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47285 * 119.99897 * 22 20 18 25 25 H 1.48495 * 109.47207 * 240.00053 * 22 20 18 26 26 S 1.70973 * 110.16793 * 359.71586 * 5 4 3 27 27 H 1.09002 * 109.47546 * 269.69619 * 1 2 3 28 28 H 1.09002 * 109.47394 * 149.68889 * 1 2 3 29 29 H 1.08998 * 109.46832 * 29.69360 * 1 2 3 30 30 H 1.07995 * 122.74851 * 359.97178 * 3 2 1 31 31 H 1.09004 * 109.46869 * 295.06306 * 8 6 5 32 32 H 1.09000 * 109.46701 * 55.06451 * 8 6 5 33 33 H 1.08995 * 109.46891 * 175.06689 * 8 6 5 34 34 H 0.96997 * 119.99915 * 323.60660 * 9 6 5 35 35 H 1.08997 * 109.47063 * 90.00295 * 14 13 10 36 36 H 1.09008 * 109.46642 * 209.99739 * 14 13 10 37 37 H 1.08993 * 109.47043 * 329.99926 * 14 13 10 38 38 H 1.09001 * 109.46822 * 300.00114 * 17 15 13 39 39 H 1.09002 * 109.46811 * 59.99630 * 17 15 13 40 40 H 1.08993 * 109.47149 * 179.97438 * 17 15 13 41 41 H 0.96994 * 120.00239 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8170 0.0045 5 6 3.9310 -0.4258 -0.0022 6 6 5.3532 -0.9247 -0.0055 7 1 5.3675 -1.9832 0.2542 8 6 5.9575 -0.7330 -1.3981 9 7 6.1376 -0.1704 0.9753 10 16 7.3188 -0.9309 1.8521 11 8 8.1402 -1.6113 0.9131 12 8 7.8202 0.0316 2.7693 13 7 6.5785 -2.1012 2.7602 14 6 6.3503 -3.4329 2.1938 15 6 6.1518 -1.8048 4.1301 16 1 6.3304 -0.7514 4.3463 17 6 6.9476 -2.6688 5.1104 18 6 4.6821 -2.1051 4.2745 19 1 4.1401 -2.5558 3.4562 20 6 4.0294 -1.8044 5.4512 21 7 4.6896 -1.2560 6.4477 22 14 2.2079 -2.1773 5.6305 23 1 1.7023 -2.7906 4.3760 24 1 2.0044 -3.1207 6.7590 25 1 1.4688 -0.9176 5.8990 26 16 2.5435 -1.4248 -0.0076 27 1 -0.3634 -0.0054 1.0276 28 1 -0.3634 -0.8872 -0.5187 29 1 -0.3633 0.8927 -0.5091 30 1 1.9025 2.0875 -0.0004 31 1 5.4284 -1.3625 -2.1135 32 1 5.8636 0.3118 -1.6942 33 1 7.0110 -1.0119 -1.3784 34 1 5.9650 0.7744 1.1112 35 1 7.2094 -4.0696 2.4050 36 1 5.4564 -3.8690 2.6399 37 1 6.2152 -3.3507 1.1154 38 1 6.7690 -3.7221 4.8940 39 1 8.0107 -2.4516 5.0059 40 1 6.6305 -2.4480 6.1295 41 1 4.2305 -1.0448 7.2757 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330428378.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:22 Heat of formation + Delta-G solvation = -34.560633 kcal Electronic energy + Delta-G solvation = -25831.635304 eV Core-core repulsion = 22193.358115 eV Total energy + Delta-G solvation = -3638.277189 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 333.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.76371 -36.82482 -36.29205 -35.97005 -35.26219 -32.60111 -32.41528 -29.86523 -29.18990 -27.05087 -25.52225 -25.21574 -24.60220 -22.46464 -20.86150 -19.44855 -19.03204 -18.00302 -17.09788 -16.81466 -16.32122 -16.04090 -15.23734 -14.90541 -14.78070 -14.36929 -13.86864 -13.62934 -13.51937 -13.27526 -13.12681 -12.90706 -12.80295 -12.66909 -12.19156 -11.98112 -11.91973 -11.54907 -11.51773 -11.41497 -11.27332 -11.20523 -11.17613 -10.99339 -10.87150 -10.49615 -10.27220 -10.13136 -9.75405 -9.35481 -9.17215 -9.12572 -8.73254 -8.51537 -8.00330 -6.12053 -4.18953 0.69701 1.17003 1.40377 1.77588 2.86949 3.20731 3.29009 3.30755 3.48352 3.95256 4.23544 4.33371 4.68422 4.85659 4.92843 5.04713 5.15253 5.16298 5.20592 5.35980 5.43218 5.60902 5.63663 5.77879 5.80837 6.06622 6.10689 6.13370 6.25271 6.34324 6.61911 6.82892 6.84435 7.08337 7.22641 7.48399 7.59463 7.76444 7.79376 7.98537 8.22881 8.83738 9.46823 10.94699 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.009071 B = 0.007120 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.851056 B = 3931.851402 C = 6177.076428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.228 4.228 3 C 0.035 3.965 4 N -0.461 5.461 5 C 0.045 3.955 6 C 0.239 3.761 7 H 0.099 0.901 8 C -0.164 4.164 9 N -1.114 6.114 10 S 2.779 3.221 11 O -0.994 6.994 12 O -0.976 6.976 13 N -0.990 5.990 14 C 0.101 3.899 15 C 0.267 3.733 16 H 0.062 0.938 17 C -0.141 4.141 18 C -0.523 4.523 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.886 5.886 22 Si 0.891 3.109 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 S 0.139 5.861 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.173 0.827 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.421 0.579 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.033 0.967 39 H 0.014 0.986 40 H 0.084 0.916 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.836 -0.582 -14.537 15.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.350 4.350 3 C -0.117 4.117 4 N -0.174 5.174 5 C -0.234 4.234 6 C 0.127 3.873 7 H 0.117 0.883 8 C -0.224 4.224 9 N -0.873 5.873 10 S 2.788 3.212 11 O -0.978 6.978 12 O -0.960 6.960 13 N -0.833 5.833 14 C -0.045 4.045 15 C 0.165 3.835 16 H 0.080 0.920 17 C -0.201 4.201 18 C -0.562 4.562 19 H 0.082 0.918 20 C -0.137 4.137 21 N -0.524 5.524 22 Si 0.718 3.282 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.211 1.211 26 S 0.395 5.605 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.190 0.810 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.255 0.745 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.033 0.967 40 H 0.102 0.898 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.605 -1.187 -14.392 15.157 hybrid contribution -2.000 1.066 0.472 2.315 sum -6.605 -0.122 -13.920 15.408 Atomic orbital electron populations 1.20213 0.86911 1.03098 1.03092 1.25989 1.01623 0.95266 1.12098 1.21636 0.86849 0.99944 1.03231 1.66049 1.17678 1.18544 1.15173 1.27041 1.00423 0.91945 1.04024 1.19154 0.82567 0.94964 0.90630 0.88330 1.22329 1.02421 1.03356 0.94294 1.56163 1.55357 1.22132 1.53626 1.01980 0.73528 0.73151 0.72577 1.93550 1.65377 1.75044 1.63789 1.93606 1.78152 1.61424 1.62835 1.57747 1.77199 1.22291 1.26082 1.21311 1.02491 0.84878 0.95843 1.18744 0.93833 0.96832 0.74127 0.91994 1.22016 0.96101 0.98869 1.03083 1.21344 0.93458 1.41636 0.99772 0.91830 1.24909 0.98113 0.94915 0.95810 1.69920 1.35949 1.41964 1.04518 0.86560 0.85378 0.78042 0.78186 1.19620 1.20923 1.21062 1.83970 0.98228 1.11025 1.67321 0.90437 0.91213 0.90359 0.80992 0.91496 0.91244 0.89916 0.74482 0.93447 0.89851 0.93584 0.94742 0.96718 0.89766 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.42 36.00 0.38 -0.29 16 2 C -0.23 -2.83 6.60 -35.92 -0.24 -3.07 16 3 C 0.03 0.46 11.25 -19.18 -0.22 0.25 16 4 N -0.46 -7.07 10.23 -11.86 -0.12 -7.19 16 5 C 0.04 0.67 6.24 -13.45 -0.08 0.58 16 6 C 0.24 3.48 3.35 -69.07 -0.23 3.25 16 7 H 0.10 1.36 5.60 -51.93 -0.29 1.07 16 8 C -0.16 -2.00 9.50 37.16 0.35 -1.65 16 9 N -1.11 -18.75 5.51 -5.87 -0.03 -18.78 16 10 S 2.78 54.68 5.96 -107.50 -0.64 54.04 16 11 O -0.99 -19.70 16.74 -57.17 -0.96 -20.66 16 12 O -0.98 -22.66 16.66 -57.17 -0.95 -23.61 16 13 N -0.99 -20.23 3.12 -115.85 -0.36 -20.59 16 14 C 0.10 1.72 9.14 59.85 0.55 2.27 16 15 C 0.27 6.51 2.51 -69.08 -0.17 6.33 16 16 H 0.06 1.70 6.91 -51.93 -0.36 1.35 16 17 C -0.14 -3.33 9.08 37.16 0.34 -2.99 16 18 C -0.52 -13.26 8.00 -34.44 -0.28 -13.54 16 19 H 0.06 1.55 6.83 -52.48 -0.36 1.20 16 20 C 0.07 1.72 5.32 -17.82 -0.09 1.63 16 21 N -0.89 -24.53 11.70 55.43 0.65 -23.88 16 22 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 S 0.14 1.85 23.18 -107.50 -2.49 -0.64 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.05 7.74 -51.93 -0.40 0.65 16 34 H 0.42 6.95 8.59 -34.47 -0.30 6.66 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.44 6.59 -51.92 -0.34 1.09 16 37 H 0.05 0.65 5.90 -51.93 -0.31 0.34 16 38 H 0.03 0.75 7.79 -51.93 -0.40 0.34 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 2.16 6.48 -51.93 -0.34 1.82 16 41 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -31.83 361.13 -9.80 -41.62 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.61 Total: 6.11 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 0.30 Total: -7.21 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: 0.13 Total: -70.44 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -1.91 Total: -44.27 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 56.53 SS G_CDS: -3.13 Total: 53.40 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.83 -9.80 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330428378.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.062 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds