Wall clock time and date at job start Tue Mar 31 2020 17:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33645 * 126.03974 * 2 1 4 4 N 1.31778 * 114.49825 * 179.78635 * 3 2 1 5 5 C 1.29028 * 117.12496 * 0.51884 * 4 3 2 6 6 C 1.50709 * 124.91489 * 179.67912 * 5 4 3 7 7 H 1.09002 * 109.46787 * 165.04240 * 6 5 4 8 8 C 1.53006 * 109.46992 * 285.04096 * 6 5 4 9 9 N 1.46499 * 109.47159 * 45.04149 * 6 5 4 10 10 S 1.65598 * 119.99693 * 143.60337 * 9 6 5 11 11 O 1.42099 * 106.40218 * 51.20273 * 10 9 6 12 12 O 1.42099 * 106.39992 * 184.11604 * 10 9 6 13 13 N 1.65593 * 107.22046 * 297.65973 * 10 9 6 14 14 C 1.46502 * 119.99975 * 86.78771 * 13 10 9 15 15 C 1.46507 * 120.00054 * 266.78687 * 13 10 9 16 16 H 1.09004 * 109.46962 * 4.52017 * 15 13 10 17 17 C 1.53001 * 109.47334 * 244.51746 * 15 13 10 18 18 C 1.50699 * 109.47066 * 124.51736 * 15 13 10 19 19 H 1.08007 * 120.00159 * 5.07251 * 18 15 13 20 20 C 1.37878 * 119.99989 * 185.07499 * 18 15 13 21 21 N 1.31516 * 120.00057 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 120.00098 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.47204 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47285 * 119.99897 * 22 20 18 25 25 H 1.48495 * 109.47207 * 240.00053 * 22 20 18 26 26 S 1.70973 * 110.16793 * 359.71586 * 5 4 3 27 27 H 1.09002 * 109.47546 * 269.69619 * 1 2 3 28 28 H 1.09002 * 109.47394 * 149.68889 * 1 2 3 29 29 H 1.08998 * 109.46832 * 29.69360 * 1 2 3 30 30 H 1.07995 * 122.74851 * 359.97178 * 3 2 1 31 31 H 1.09004 * 109.46869 * 295.06306 * 8 6 5 32 32 H 1.09000 * 109.46701 * 55.06451 * 8 6 5 33 33 H 1.08995 * 109.46891 * 175.06689 * 8 6 5 34 34 H 0.96997 * 119.99915 * 323.60660 * 9 6 5 35 35 H 1.08997 * 109.47063 * 90.00295 * 14 13 10 36 36 H 1.09008 * 109.46642 * 209.99739 * 14 13 10 37 37 H 1.08993 * 109.47043 * 329.99926 * 14 13 10 38 38 H 1.09001 * 109.46822 * 300.00114 * 17 15 13 39 39 H 1.09002 * 109.46811 * 59.99630 * 17 15 13 40 40 H 1.08993 * 109.47149 * 179.97438 * 17 15 13 41 41 H 0.96994 * 120.00239 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8170 0.0045 5 6 3.9310 -0.4258 -0.0022 6 6 5.3532 -0.9247 -0.0055 7 1 5.3675 -1.9832 0.2542 8 6 5.9575 -0.7330 -1.3981 9 7 6.1376 -0.1704 0.9753 10 16 7.3188 -0.9309 1.8521 11 8 8.1402 -1.6113 0.9131 12 8 7.8202 0.0316 2.7693 13 7 6.5785 -2.1012 2.7602 14 6 6.3503 -3.4329 2.1938 15 6 6.1518 -1.8048 4.1301 16 1 6.3304 -0.7514 4.3463 17 6 6.9476 -2.6688 5.1104 18 6 4.6821 -2.1051 4.2745 19 1 4.1401 -2.5558 3.4562 20 6 4.0294 -1.8044 5.4512 21 7 4.6896 -1.2560 6.4477 22 14 2.2079 -2.1773 5.6305 23 1 1.7023 -2.7906 4.3760 24 1 2.0044 -3.1207 6.7590 25 1 1.4688 -0.9176 5.8990 26 16 2.5435 -1.4248 -0.0076 27 1 -0.3634 -0.0054 1.0276 28 1 -0.3634 -0.8872 -0.5187 29 1 -0.3633 0.8927 -0.5091 30 1 1.9025 2.0875 -0.0004 31 1 5.4284 -1.3625 -2.1135 32 1 5.8636 0.3118 -1.6942 33 1 7.0110 -1.0119 -1.3784 34 1 5.9650 0.7744 1.1112 35 1 7.2094 -4.0696 2.4050 36 1 5.4564 -3.8690 2.6399 37 1 6.2152 -3.3507 1.1154 38 1 6.7690 -3.7221 4.8940 39 1 8.0107 -2.4516 5.0059 40 1 6.6305 -2.4480 6.1295 41 1 4.2305 -1.0448 7.2757 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330428378.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:21 Heat of formation + Delta-G solvation = -57.665839 kcal Electronic energy + Delta-G solvation = -25832.637221 eV Core-core repulsion = 22193.358115 eV Total energy + Delta-G solvation = -3639.279106 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 333.097 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79946 -38.41954 -37.95477 -37.27798 -36.92562 -34.50004 -33.34110 -31.03577 -31.00480 -27.97574 -27.21610 -27.04142 -25.56996 -23.51678 -22.68769 -20.75243 -20.23912 -19.28496 -18.64639 -18.32126 -18.14832 -17.39094 -16.88418 -16.19351 -15.88623 -15.77651 -15.20041 -14.92927 -14.84002 -14.71583 -14.45778 -13.99540 -13.84122 -13.69452 -13.58134 -13.51671 -13.28307 -13.19459 -13.15706 -13.00480 -12.87120 -12.69028 -12.66187 -12.37207 -12.26718 -12.13016 -12.09660 -11.91214 -11.20951 -10.88323 -10.52998 -10.44449 -10.15656 -9.76084 -9.64718 -8.11211 -6.23970 -0.44960 -0.22064 0.36314 0.75471 1.40920 1.43445 1.53487 1.79972 2.02555 2.43724 2.53969 3.05536 3.19664 3.41083 3.56281 4.01413 4.04141 4.10999 4.21392 4.28189 4.40355 4.68808 4.71332 4.79843 4.82071 4.88248 4.92677 4.96491 5.02477 5.08904 5.13198 5.22228 5.26564 5.32695 5.59004 5.62599 5.82984 5.95481 6.09596 6.27270 6.76906 6.85728 7.45164 8.95556 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.009071 B = 0.007120 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.851056 B = 3931.851402 C = 6177.076428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.221 4.221 3 C 0.012 3.988 4 N -0.481 5.481 5 C 0.021 3.979 6 C 0.230 3.770 7 H 0.106 0.894 8 C -0.158 4.158 9 N -1.110 6.110 10 S 2.795 3.205 11 O -0.995 6.995 12 O -1.017 7.017 13 N -0.996 5.996 14 C 0.091 3.909 15 C 0.273 3.727 16 H 0.023 0.977 17 C -0.134 4.134 18 C -0.521 4.521 19 H 0.074 0.926 20 C 0.015 3.985 21 N -0.921 5.921 22 Si 0.949 3.051 23 H -0.255 1.255 24 H -0.282 1.282 25 H -0.289 1.289 26 S 0.148 5.852 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.193 0.807 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.421 0.579 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.019 0.981 40 H 0.059 0.941 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.778 -1.658 -16.328 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.342 4.342 3 C -0.138 4.138 4 N -0.196 5.196 5 C -0.257 4.257 6 C 0.119 3.881 7 H 0.124 0.876 8 C -0.218 4.218 9 N -0.870 5.870 10 S 2.804 3.196 11 O -0.978 6.978 12 O -1.001 7.001 13 N -0.838 5.838 14 C -0.054 4.054 15 C 0.169 3.831 16 H 0.040 0.960 17 C -0.194 4.194 18 C -0.561 4.561 19 H 0.092 0.908 20 C -0.184 4.184 21 N -0.560 5.560 22 Si 0.775 3.225 23 H -0.179 1.179 24 H -0.208 1.208 25 H -0.216 1.216 26 S 0.402 5.598 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.119 0.881 30 H 0.210 0.790 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.256 0.744 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.078 0.922 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.540 -2.290 -16.215 17.633 hybrid contribution -1.429 1.417 0.955 2.228 sum -7.969 -0.873 -15.260 17.237 Atomic orbital electron populations 1.20381 0.84428 1.04969 1.03659 1.26476 1.03207 0.94412 1.10126 1.22029 0.86426 1.01327 1.04017 1.66040 1.18997 1.19099 1.15439 1.27032 1.00881 0.92351 1.05462 1.19454 0.82677 0.94935 0.91046 0.87599 1.22295 1.02192 1.03891 0.93451 1.55920 1.55317 1.22101 1.53697 1.01344 0.73617 0.72506 0.72133 1.93543 1.65735 1.75078 1.63408 1.93548 1.79416 1.62747 1.64411 1.57617 1.77229 1.24004 1.24936 1.21577 1.02980 0.83279 0.97553 1.18390 0.93828 0.94709 0.76211 0.95956 1.21900 0.96275 0.99659 1.01587 1.21615 0.93980 1.40728 0.99769 0.90820 1.25678 1.02043 0.94998 0.95705 1.70061 1.37555 1.43371 1.05026 0.85630 0.80619 0.77555 0.78686 1.17873 1.20791 1.21583 1.83853 0.97704 1.11196 1.67018 0.90304 0.89811 0.88086 0.79017 0.88895 0.91418 0.90442 0.74403 0.92339 0.89932 0.90591 0.93141 0.96159 0.92196 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.42 71.23 0.74 -0.36 16 2 C -0.22 -4.93 6.60 24.64 0.16 -4.77 16 3 C 0.01 0.31 11.25 83.66 0.94 1.25 16 4 N -0.48 -14.26 10.23 -191.44 -1.96 -16.21 16 5 C 0.02 0.60 6.24 88.52 0.55 1.16 16 6 C 0.23 6.38 3.35 44.25 0.15 6.53 16 7 H 0.11 2.71 5.60 -2.39 -0.01 2.70 16 8 C -0.16 -3.59 9.50 71.98 0.68 -2.90 16 9 N -1.11 -36.97 5.51 -172.50 -0.95 -37.92 16 10 S 2.80 109.67 5.96 -56.49 -0.34 109.33 16 11 O -0.99 -38.33 16.74 -128.00 -2.14 -40.47 16 12 O -1.02 -48.49 16.66 -128.00 -2.13 -50.62 16 13 N -1.00 -40.08 3.12 -520.42 -1.62 -41.71 16 14 C 0.09 2.92 9.14 127.77 1.17 4.09 16 15 C 0.27 13.41 2.51 44.24 0.11 13.52 16 16 H 0.02 1.28 6.91 -2.38 -0.02 1.27 16 17 C -0.13 -6.40 9.08 71.98 0.65 -5.75 16 18 C -0.52 -26.23 8.00 25.60 0.20 -26.02 16 19 H 0.07 3.48 6.83 -2.91 -0.02 3.46 16 20 C 0.02 0.80 5.32 84.65 0.45 1.25 16 21 N -0.92 -51.93 11.70 21.45 0.25 -51.68 16 22 Si 0.95 41.16 29.54 68.60 2.03 43.19 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 25 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 26 S 0.15 3.60 23.18 -56.49 -1.31 2.29 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.19 3.74 8.06 -2.91 -0.02 3.72 16 31 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.84 7.74 -2.39 -0.02 1.82 16 34 H 0.42 14.08 8.59 -96.75 -0.83 13.25 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 2.66 6.59 -2.38 -0.02 2.65 16 37 H 0.08 1.95 5.90 -2.39 -0.01 1.94 16 38 H 0.05 2.17 7.79 -2.39 -0.02 2.15 16 39 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 3.14 6.48 -2.39 -0.02 3.13 16 41 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -68.31 361.13 -2.13 -70.44 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.23 Total: 25.36 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 5.82 Total: -12.01 kcal Atomic # 7 Polarization: -143.24 SS G_CDS: -4.28 Total: -147.52 kcal Atomic # 8 Polarization: -86.81 SS G_CDS: -4.27 Total: -91.09 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Atomic # 16 Polarization: 113.26 SS G_CDS: -1.65 Total: 111.62 kcal Total: -68.31 -2.13 -70.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330428378.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.777 kcal (2) G-P(sol) polarization free energy of solvation -68.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds