Wall clock time and date at job start Tue Mar 31 2020 17:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30446 * 125.98156 * 2 1 4 4 N 1.39930 * 108.91076 * 180.14083 * 3 2 1 5 5 C 1.46501 * 125.75054 * 179.87616 * 4 3 2 6 6 C 1.50706 * 109.46707 * 269.68820 * 5 4 3 7 7 C 1.38244 * 119.98773 * 89.99870 * 6 5 4 8 8 C 1.38217 * 120.01084 * 180.02562 * 7 6 5 9 9 C 1.38351 * 119.98541 * 0.25893 * 8 7 6 10 10 Cl 1.73604 * 120.00786 * 179.69323 * 9 8 7 11 11 C 1.38349 * 119.97465 * 359.42086 * 9 8 7 12 12 C 1.38212 * 119.98525 * 0.59771 * 11 9 8 13 13 C 1.34287 * 108.49892 * 359.60594 * 4 3 2 14 14 C 1.50699 * 126.29755 * 180.25460 * 13 4 3 15 15 C 1.38103 * 107.40391 * 0.22932 * 13 4 3 16 16 C 1.47358 * 126.42422 * 179.97438 * 15 13 4 17 17 O 1.21627 * 120.00337 * 89.99667 * 16 15 13 18 18 N 1.34780 * 119.99947 * 270.00076 * 16 15 13 19 19 C 1.36974 * 120.00000 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00188 * 359.97438 * 19 18 16 21 21 C 1.38977 * 119.99924 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00129 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00001 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46977 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46891 * 119.99982 * 23 21 19 26 26 H 1.48497 * 109.46892 * 239.99865 * 23 21 19 27 27 H 1.09000 * 109.47493 * 270.28555 * 1 2 3 28 28 H 1.08996 * 109.47390 * 30.29282 * 1 2 3 29 29 H 1.09003 * 109.46747 * 150.28915 * 1 2 3 30 30 H 1.08992 * 109.47520 * 149.68785 * 5 4 3 31 31 H 1.09001 * 109.47422 * 29.68215 * 5 4 3 32 32 H 1.07999 * 119.99331 * 0.02562 * 7 6 5 33 33 H 1.08002 * 120.00169 * 179.97438 * 8 7 6 34 34 H 1.08008 * 120.00633 * 180.29755 * 11 9 8 35 35 H 1.08000 * 119.99226 * 179.67843 * 12 11 9 36 36 H 1.08990 * 109.47683 * 89.99778 * 14 13 4 37 37 H 1.09000 * 109.46716 * 210.00169 * 14 13 4 38 38 H 1.09005 * 109.46934 * 329.99180 * 14 13 4 39 39 H 0.96999 * 119.99762 * 359.97438 * 18 16 15 40 40 H 0.96998 * 120.00330 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0556 0.0000 4 7 3.6111 0.6448 -0.0033 5 6 4.7783 1.5301 -0.0069 6 6 5.1795 1.8266 -1.4290 7 6 4.6398 2.9165 -2.0862 8 6 5.0069 3.1885 -3.3907 9 6 5.9106 2.3667 -4.0404 10 17 6.3661 2.7033 -5.6814 11 6 6.4554 1.2800 -3.3799 12 6 6.0872 1.0088 -2.0756 13 6 3.6446 -0.6976 0.0035 14 6 4.8810 -1.5592 0.0084 15 6 2.3375 -1.1434 0.0058 16 6 1.8921 -2.5481 0.0123 17 8 1.7085 -3.1230 1.0683 18 7 1.6883 -3.1958 -1.1519 19 6 1.2749 -4.5017 -1.1459 20 1 1.1126 -5.0124 -0.2082 21 6 1.0652 -5.1698 -2.3464 22 7 1.2631 -4.5485 -3.4873 23 14 0.5020 -6.9509 -2.3381 24 1 0.3524 -7.4162 -0.9359 25 1 -0.8034 -7.0605 -3.0375 26 1 1.5088 -7.7915 -3.0345 27 1 -0.3634 0.0051 1.0276 28 1 -0.3634 0.8873 -0.5183 29 1 -0.3633 -0.8926 -0.5094 30 1 5.6053 1.0432 0.5099 31 1 4.5297 2.4614 0.5021 32 1 3.9311 3.5555 -1.5803 33 1 4.5848 4.0398 -3.9042 34 1 7.1646 0.6409 -3.8850 35 1 6.5085 0.1574 -1.5617 36 1 5.1788 -1.7617 1.0371 37 1 4.6705 -2.4996 -0.5009 38 1 5.6881 -1.0393 -0.5079 39 1 1.8344 -2.7373 -1.9941 40 1 1.1172 -5.0149 -4.3252 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339926223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:32 Heat of formation + Delta-G solvation = 47.887024 kcal Electronic energy + Delta-G solvation = -25519.020783 eV Core-core repulsion = 21746.831135 eV Total energy + Delta-G solvation = -3772.189648 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.098 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.09797 -39.56660 -37.68135 -36.79020 -34.44605 -33.84049 -32.23602 -31.39821 -31.26440 -30.71031 -28.46202 -27.22919 -25.53316 -24.64762 -23.18948 -22.03494 -21.09445 -19.10028 -18.79069 -17.85505 -17.54662 -16.48053 -16.03543 -15.89415 -15.42585 -14.84298 -14.52670 -13.99094 -13.91753 -13.77436 -13.70749 -13.60161 -13.24827 -12.97371 -12.77789 -12.60999 -12.40073 -12.32901 -11.99370 -11.73699 -11.68384 -11.55334 -11.52908 -11.43178 -11.08667 -11.05073 -10.33045 -10.28991 -10.20830 -9.49068 -9.33051 -9.01481 -8.77518 -8.49721 -7.93627 -7.90597 -6.39530 -3.79966 0.70924 1.00450 1.85088 2.08361 2.62482 3.01840 3.17124 3.28354 3.35774 3.41734 3.89075 4.20733 4.31123 4.36626 4.56192 4.61454 4.86350 4.94839 4.99899 5.12988 5.22267 5.25267 5.29405 5.39013 5.42054 5.61926 5.67814 5.70085 5.85889 5.92125 6.00650 6.05294 6.14763 6.22390 6.32810 6.39342 6.46023 6.52013 7.01442 7.24749 7.57207 8.04158 8.10763 8.65204 9.20030 9.60034 10.12747 10.77896 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.003380 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.872654 B = 8282.518635 C = 9734.602471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.108 3.892 3 N -0.306 5.306 4 N -0.366 5.366 5 C 0.176 3.824 6 C -0.109 4.109 7 C -0.077 4.077 8 C -0.113 4.113 9 C -0.026 4.026 10 Cl -0.071 7.071 11 C -0.111 4.111 12 C -0.089 4.089 13 C 0.110 3.890 14 C -0.094 4.094 15 C -0.241 4.241 16 C 0.516 3.484 17 O -0.593 6.593 18 N -0.550 5.550 19 C -0.301 4.301 20 H 0.104 0.896 21 C 0.024 3.976 22 N -0.898 5.898 23 Si 0.927 3.073 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.282 1.282 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.393 0.607 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.320 16.081 -0.438 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.059 4.059 3 N -0.127 5.127 4 N -0.147 5.147 5 C 0.055 3.945 6 C -0.110 4.110 7 C -0.096 4.096 8 C -0.132 4.132 9 C -0.053 4.053 10 Cl -0.042 7.042 11 C -0.129 4.129 12 C -0.107 4.107 13 C -0.018 4.018 14 C -0.153 4.153 15 C -0.255 4.255 16 C 0.300 3.700 17 O -0.478 6.478 18 N -0.185 5.185 19 C -0.430 4.430 20 H 0.122 0.878 21 C -0.178 4.178 22 N -0.539 5.539 23 Si 0.754 3.246 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.227 0.773 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.349 16.988 -0.070 20.430 hybrid contribution -0.113 -1.396 -0.894 1.662 sum 11.236 15.592 -0.964 19.242 Atomic orbital electron populations 1.20193 0.86518 1.03371 1.03013 1.22330 0.96698 0.89459 0.97409 1.76942 0.85841 1.22571 1.27359 1.48039 1.04916 1.03556 1.58205 1.20446 0.85407 0.95409 0.93285 1.20161 0.97860 0.96250 0.96738 1.21052 0.97944 0.96828 0.93795 1.21064 0.97344 0.99861 0.94930 1.21009 0.99743 0.97895 0.86618 1.98379 1.91615 1.94906 1.19297 1.21058 1.00662 0.96472 0.94752 1.21130 0.96836 0.98591 0.94169 1.21300 0.96478 0.84101 0.99956 1.20554 0.92083 0.99173 1.03454 1.20291 0.91332 0.95668 1.18218 1.16859 0.84344 0.84139 0.84612 1.90602 1.57647 1.68204 1.31329 1.41888 1.57919 1.12016 1.06638 1.19778 1.41579 0.87204 0.94468 0.87782 1.25270 0.97549 1.00281 0.94657 1.69636 1.48978 1.37698 0.97539 0.85833 0.78165 0.81957 0.78603 1.19154 1.20737 1.20781 0.90478 0.91124 0.89921 0.88049 0.87735 0.84680 0.84743 0.84586 0.84729 0.89975 0.88898 0.91470 0.77315 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.28 36.01 0.37 -0.82 16 2 C 0.11 2.05 7.27 -82.01 -0.60 1.46 16 3 N -0.31 -5.32 12.50 33.90 0.42 -4.89 16 4 N -0.37 -5.54 3.56 -57.75 -0.21 -5.75 16 5 C 0.18 1.81 6.16 -5.19 -0.03 1.78 16 6 C -0.11 -1.13 5.46 -104.62 -0.57 -1.70 16 7 C -0.08 -0.79 9.70 -39.59 -0.38 -1.17 16 8 C -0.11 -1.13 9.83 -39.55 -0.39 -1.52 16 9 C -0.03 -0.27 6.32 -39.50 -0.25 -0.52 16 10 Cl -0.07 -0.71 28.96 -51.86 -1.50 -2.21 16 11 C -0.11 -1.12 9.83 -39.55 -0.39 -1.50 16 12 C -0.09 -0.88 9.46 -39.59 -0.37 -1.25 16 13 C 0.11 1.89 7.01 -81.57 -0.57 1.32 16 14 C -0.09 -1.31 9.70 36.01 0.35 -0.96 16 15 C -0.24 -5.02 5.88 -105.07 -0.62 -5.63 16 16 C 0.52 12.83 6.93 -12.55 -0.09 12.75 16 17 O -0.59 -16.82 16.68 5.25 0.09 -16.74 16 18 N -0.55 -14.27 5.28 -11.97 -0.06 -14.33 16 19 C -0.30 -8.36 9.68 -14.98 -0.14 -8.50 16 20 H 0.10 3.03 7.15 -52.48 -0.38 2.65 16 21 C 0.02 0.65 5.50 -17.46 -0.10 0.55 16 22 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 23 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.47 8.01 -51.93 -0.42 1.06 16 30 H 0.10 0.79 7.57 -51.93 -0.39 0.40 16 31 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 32 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.14 1.10 5.93 -52.49 -0.31 0.79 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.49 7.96 -51.93 -0.41 1.08 16 38 H 0.07 0.69 5.26 -51.93 -0.27 0.42 16 39 H 0.39 10.11 7.88 -40.82 -0.32 9.79 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -33.39 364.65 -8.44 -41.84 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -4.59 Total: 10.21 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -3.78 Total: -5.73 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.88 Total: -48.71 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.09 Total: -16.74 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.39 -8.44 -41.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339926223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.722 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds