Wall clock time and date at job start Tue Mar 31 2020 17:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30446 * 125.98156 * 2 1 4 4 N 1.39930 * 108.91076 * 180.14083 * 3 2 1 5 5 C 1.46501 * 125.75054 * 179.87616 * 4 3 2 6 6 C 1.50706 * 109.46707 * 269.68820 * 5 4 3 7 7 C 1.38244 * 119.98773 * 89.99870 * 6 5 4 8 8 C 1.38217 * 120.01084 * 180.02562 * 7 6 5 9 9 C 1.38351 * 119.98541 * 0.25893 * 8 7 6 10 10 Cl 1.73604 * 120.00786 * 179.69323 * 9 8 7 11 11 C 1.38349 * 119.97465 * 359.42086 * 9 8 7 12 12 C 1.38212 * 119.98525 * 0.59771 * 11 9 8 13 13 C 1.34287 * 108.49892 * 359.60594 * 4 3 2 14 14 C 1.50699 * 126.29755 * 180.25460 * 13 4 3 15 15 C 1.38103 * 107.40391 * 0.22932 * 13 4 3 16 16 C 1.47358 * 126.42422 * 179.97438 * 15 13 4 17 17 O 1.21627 * 120.00337 * 89.99667 * 16 15 13 18 18 N 1.34780 * 119.99947 * 270.00076 * 16 15 13 19 19 C 1.36974 * 120.00000 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00188 * 359.97438 * 19 18 16 21 21 C 1.38977 * 119.99924 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00129 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00001 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46977 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46891 * 119.99982 * 23 21 19 26 26 H 1.48497 * 109.46892 * 239.99865 * 23 21 19 27 27 H 1.09000 * 109.47493 * 270.28555 * 1 2 3 28 28 H 1.08996 * 109.47390 * 30.29282 * 1 2 3 29 29 H 1.09003 * 109.46747 * 150.28915 * 1 2 3 30 30 H 1.08992 * 109.47520 * 149.68785 * 5 4 3 31 31 H 1.09001 * 109.47422 * 29.68215 * 5 4 3 32 32 H 1.07999 * 119.99331 * 0.02562 * 7 6 5 33 33 H 1.08002 * 120.00169 * 179.97438 * 8 7 6 34 34 H 1.08008 * 120.00633 * 180.29755 * 11 9 8 35 35 H 1.08000 * 119.99226 * 179.67843 * 12 11 9 36 36 H 1.08990 * 109.47683 * 89.99778 * 14 13 4 37 37 H 1.09000 * 109.46716 * 210.00169 * 14 13 4 38 38 H 1.09005 * 109.46934 * 329.99180 * 14 13 4 39 39 H 0.96999 * 119.99762 * 359.97438 * 18 16 15 40 40 H 0.96998 * 120.00330 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0556 0.0000 4 7 3.6111 0.6448 -0.0033 5 6 4.7783 1.5301 -0.0069 6 6 5.1795 1.8266 -1.4290 7 6 4.6398 2.9165 -2.0862 8 6 5.0069 3.1885 -3.3907 9 6 5.9106 2.3667 -4.0404 10 17 6.3661 2.7033 -5.6814 11 6 6.4554 1.2800 -3.3799 12 6 6.0872 1.0088 -2.0756 13 6 3.6446 -0.6976 0.0035 14 6 4.8810 -1.5592 0.0084 15 6 2.3375 -1.1434 0.0058 16 6 1.8921 -2.5481 0.0123 17 8 1.7085 -3.1230 1.0683 18 7 1.6883 -3.1958 -1.1519 19 6 1.2749 -4.5017 -1.1459 20 1 1.1126 -5.0124 -0.2082 21 6 1.0652 -5.1698 -2.3464 22 7 1.2631 -4.5485 -3.4873 23 14 0.5020 -6.9509 -2.3381 24 1 0.3524 -7.4162 -0.9359 25 1 -0.8034 -7.0605 -3.0375 26 1 1.5088 -7.7915 -3.0345 27 1 -0.3634 0.0051 1.0276 28 1 -0.3634 0.8873 -0.5183 29 1 -0.3633 -0.8926 -0.5094 30 1 5.6053 1.0432 0.5099 31 1 4.5297 2.4614 0.5021 32 1 3.9311 3.5555 -1.5803 33 1 4.5848 4.0398 -3.9042 34 1 7.1646 0.6409 -3.8850 35 1 6.5085 0.1574 -1.5617 36 1 5.1788 -1.7617 1.0371 37 1 4.6705 -2.4996 -0.5009 38 1 5.6881 -1.0393 -0.5079 39 1 1.8344 -2.7373 -1.9941 40 1 1.1172 -5.0149 -4.3252 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339926223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:31 Heat of formation + Delta-G solvation = 27.861224 kcal Electronic energy + Delta-G solvation = -25519.889167 eV Core-core repulsion = 21746.831135 eV Total energy + Delta-G solvation = -3773.058032 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.098 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.41389 -40.39791 -39.61315 -37.58462 -35.93920 -35.52800 -33.48753 -33.11651 -32.19303 -31.95907 -29.59357 -28.64433 -26.96452 -26.21549 -23.94847 -23.23502 -22.35818 -20.56111 -20.31323 -19.83715 -18.43071 -17.94228 -17.22209 -16.81623 -16.68547 -16.34935 -15.95604 -15.67308 -15.31563 -14.82335 -14.69750 -14.63982 -14.51845 -14.36263 -14.11268 -13.93173 -13.53562 -13.52795 -13.39744 -13.20276 -12.95140 -12.84686 -12.53938 -12.44007 -12.38730 -12.34963 -12.09798 -11.81628 -11.70554 -11.49580 -10.50148 -10.07967 -10.07508 -10.01762 -9.75088 -9.38048 -8.45353 -5.94739 -0.09827 0.25751 0.75919 1.08108 1.37537 1.43335 1.51469 1.54288 1.59882 1.99960 2.32927 2.61653 3.20078 3.28896 3.56242 3.57119 3.65429 3.75358 3.86341 3.95389 4.17638 4.21823 4.37083 4.45016 4.48345 4.56645 4.58138 4.65476 4.71355 4.86411 4.92402 4.93271 4.99884 5.09298 5.11624 5.18923 5.39756 5.42469 5.58843 5.72019 6.01459 6.04450 6.58930 6.67586 7.11843 7.56143 8.11786 8.72102 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.003380 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.872654 B = 8282.518635 C = 9734.602471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.094 3.906 3 N -0.306 5.306 4 N -0.350 5.350 5 C 0.165 3.835 6 C -0.117 4.117 7 C -0.084 4.084 8 C -0.121 4.121 9 C -0.037 4.037 10 Cl -0.072 7.072 11 C -0.120 4.120 12 C -0.092 4.092 13 C 0.125 3.875 14 C -0.094 4.094 15 C -0.293 4.293 16 C 0.525 3.475 17 O -0.636 6.636 18 N -0.554 5.554 19 C -0.334 4.334 20 H 0.082 0.918 21 C -0.008 4.008 22 N -0.918 5.918 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.269 1.269 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.135 0.865 31 H 0.124 0.876 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.392 0.608 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.689 16.867 -0.656 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 N -0.128 5.128 4 N -0.130 5.130 5 C 0.047 3.953 6 C -0.118 4.118 7 C -0.102 4.102 8 C -0.139 4.139 9 C -0.064 4.064 10 Cl -0.043 7.043 11 C -0.139 4.139 12 C -0.110 4.110 13 C -0.006 4.006 14 C -0.152 4.152 15 C -0.307 4.307 16 C 0.312 3.688 17 O -0.524 6.524 18 N -0.188 5.188 19 C -0.463 4.463 20 H 0.100 0.900 21 C -0.209 4.209 22 N -0.559 5.559 23 Si 0.817 3.183 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.195 1.195 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.152 0.848 31 H 0.142 0.858 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.171 0.829 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.226 0.774 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.734 17.825 -0.309 21.909 hybrid contribution -0.438 -1.526 -0.859 1.805 sum 12.296 16.299 -1.168 20.450 Atomic orbital electron populations 1.20204 0.85690 1.03382 1.03606 1.22557 0.97659 0.89149 0.97889 1.76888 0.86837 1.21878 1.27213 1.48416 1.05364 1.03397 1.55860 1.20976 0.84499 0.95867 0.94001 1.20197 0.98316 0.96590 0.96724 1.21252 0.98008 0.97078 0.93908 1.21262 0.97284 1.00267 0.95108 1.21204 1.00106 0.98345 0.86753 1.98377 1.91625 1.94926 1.19387 1.21292 1.00937 0.96559 0.95089 1.21379 0.96580 0.98923 0.94130 1.21616 0.96188 0.85279 0.97490 1.20680 0.91851 0.97890 1.04812 1.20070 0.93731 0.93758 1.23177 1.17369 0.82527 0.85487 0.83429 1.90548 1.59267 1.69923 1.32652 1.41914 1.58237 1.11694 1.06966 1.19760 1.43907 0.88405 0.94274 0.89963 1.26067 0.96772 1.04194 0.93824 1.69706 1.48828 1.39297 0.98059 0.84870 0.78196 0.76839 0.78438 1.19504 1.19683 1.19454 0.89630 0.88677 0.92188 0.84757 0.85828 0.83790 0.83573 0.83422 0.82861 0.88252 0.91443 0.87358 0.77421 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.35 10.28 71.24 0.73 -1.61 16 2 C 0.09 3.56 7.27 43.52 0.32 3.88 16 3 N -0.31 -10.20 12.50 -46.65 -0.58 -10.78 16 4 N -0.35 -9.79 3.56 -336.63 -1.20 -10.99 16 5 C 0.17 2.82 6.16 85.63 0.53 3.35 16 6 C -0.12 -2.08 5.46 -19.86 -0.11 -2.19 16 7 C -0.08 -1.51 9.70 22.27 0.22 -1.30 16 8 C -0.12 -2.21 9.83 22.29 0.22 -1.99 16 9 C -0.04 -0.72 6.32 22.32 0.14 -0.58 16 10 Cl -0.07 -1.37 28.96 -2.72 -0.08 -1.45 16 11 C -0.12 -2.17 9.83 22.29 0.22 -1.95 16 12 C -0.09 -1.54 9.46 22.26 0.21 -1.33 16 13 C 0.13 4.15 7.01 42.15 0.30 4.44 16 14 C -0.09 -2.43 9.70 71.24 0.69 -1.74 16 15 C -0.29 -12.35 5.88 -20.15 -0.12 -12.47 16 16 C 0.53 27.14 6.93 86.64 0.60 27.74 16 17 O -0.64 -37.66 16.68 -4.12 -0.07 -37.73 16 18 N -0.55 -29.89 5.28 -310.02 -1.64 -31.53 16 19 C -0.33 -19.21 9.68 84.07 0.81 -18.39 16 20 H 0.08 5.01 7.15 -2.91 -0.02 4.99 16 21 C -0.01 -0.45 5.50 84.93 0.47 0.01 16 22 N -0.92 -50.19 13.05 21.67 0.28 -49.91 16 23 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.06 2.24 8.01 -2.39 -0.02 2.22 16 30 H 0.13 1.46 7.57 -2.39 -0.02 1.44 16 31 H 0.12 1.71 8.09 -2.39 -0.02 1.69 16 32 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.15 1.89 5.93 -2.91 -0.02 1.87 16 36 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.07 2.14 7.96 -2.39 -0.02 2.12 16 38 H 0.11 1.83 5.26 -2.38 -0.01 1.81 16 39 H 0.39 20.93 7.88 -92.71 -0.73 20.20 16 40 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -74.10 364.65 4.33 -69.77 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.37 Total: 31.92 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 5.22 Total: -4.14 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -3.14 Total: -103.21 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -0.07 Total: -37.73 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -74.10 4.33 -69.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339926223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.627 kcal (2) G-P(sol) polarization free energy of solvation -74.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds