Wall clock time and date at job start Tue Mar 31 2020 17:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46879 * 2 1 4 4 N 1.46504 * 109.46920 * 180.02562 * 3 2 1 5 5 C 1.46506 * 119.99839 * 275.00552 * 4 3 2 6 6 C 1.52999 * 109.46915 * 274.99745 * 5 4 3 7 7 F 1.39901 * 109.47146 * 300.00589 * 6 5 4 8 8 F 1.39899 * 109.47296 * 60.00264 * 6 5 4 9 9 S 1.65597 * 119.99873 * 95.00426 * 4 3 2 10 10 O 1.42098 * 106.40087 * 336.45828 * 9 4 3 11 11 O 1.42098 * 106.39917 * 203.54135 * 9 4 3 12 12 C 1.76191 * 107.21923 * 89.99938 * 9 4 3 13 13 C 1.38663 * 119.88005 * 270.25421 * 12 9 4 14 14 C 1.38609 * 120.50296 * 180.30344 * 13 12 9 15 15 C 1.37636 * 120.25060 * 359.44133 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27548 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37608 * 119.87608 * 89.99791 * 12 9 4 26 26 H 1.09001 * 109.47240 * 299.99464 * 1 2 3 27 27 H 1.09000 * 109.47218 * 59.99691 * 1 2 3 28 28 H 1.09003 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46914 * 240.00112 * 2 1 3 30 30 H 1.09000 * 109.47218 * 120.00309 * 2 1 3 31 31 H 1.09000 * 109.46682 * 60.00777 * 3 2 1 32 32 H 1.09000 * 109.47447 * 300.00168 * 3 2 1 33 33 H 1.08994 * 109.47136 * 34.99735 * 5 4 3 34 34 H 1.08997 * 109.47057 * 155.00020 * 5 4 3 35 35 H 1.09000 * 109.47227 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.74225 * 0.04009 * 13 12 9 37 37 H 1.08003 * 119.87397 * 179.71831 * 14 13 12 38 38 H 1.07999 * 120.13059 * 180.25683 * 15 14 13 39 39 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 40 40 H 1.07997 * 120.12614 * 0.02562 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2381 1.3316 1.2630 6 6 4.3844 2.7191 1.8911 7 9 5.0865 3.5552 1.0163 8 9 3.1161 3.2575 2.1334 9 16 4.3324 1.5678 -1.4296 10 8 3.4503 1.1104 -2.4454 11 8 5.6154 1.0012 -1.2014 12 6 4.5930 3.2838 -1.7327 13 6 3.6512 4.0103 -2.4453 14 6 3.8461 5.3594 -2.6965 15 6 4.9739 5.9957 -2.2301 16 6 5.9336 5.2700 -1.5007 17 6 7.0963 5.9128 -1.0170 18 1 7.9888 5.3377 -0.8194 19 6 7.0907 7.2944 -0.7946 20 7 5.9550 7.9357 -0.6909 21 14 8.7047 8.2231 -0.6455 22 1 9.8372 7.2750 -0.7991 23 1 8.7795 9.2591 -1.7068 24 1 8.7803 8.8735 0.6874 25 6 5.7280 3.8993 -1.2567 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.6910 0.6802 1.9444 34 1 5.2262 0.9122 1.0742 35 1 4.9302 2.6367 2.8310 36 1 2.7610 3.5201 -2.8110 37 1 3.1080 5.9144 -3.2566 38 1 5.1218 7.0479 -2.4234 39 1 5.9512 8.8934 -0.5363 40 1 6.4585 3.3325 -0.6986 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619480302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:29 Heat of formation + Delta-G solvation = -179.796279 kcal Electronic energy + Delta-G solvation = -28306.765245 eV Core-core repulsion = 24076.057028 eV Total energy + Delta-G solvation = -4230.708217 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.100 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.70165 -47.75553 -39.38846 -38.40635 -38.09676 -36.93853 -35.62308 -34.08748 -31.87878 -31.55317 -30.28767 -27.32010 -26.57493 -24.08718 -23.40608 -22.73481 -22.41121 -20.32735 -19.57733 -18.78298 -18.41064 -17.99684 -17.67478 -17.36172 -16.85518 -16.76256 -16.46012 -15.88712 -15.54775 -15.17739 -15.07118 -14.75269 -14.49730 -14.34615 -14.02423 -13.84100 -13.73614 -13.55128 -13.40729 -13.24025 -13.06188 -13.02483 -13.01425 -12.76738 -12.69234 -12.61364 -12.57506 -12.31692 -12.17870 -11.97708 -11.54516 -11.47088 -11.24481 -11.11818 -10.12248 -9.73686 -9.47276 -8.68639 -6.38430 -0.57656 0.46054 0.89880 1.37396 1.45033 1.52693 1.94464 2.19081 2.57520 2.70858 3.06704 3.30959 3.47328 3.53163 3.69235 3.81268 4.09266 4.12730 4.23945 4.32245 4.44043 4.47700 4.58939 4.62150 4.78829 4.87735 4.91741 4.93735 5.01117 5.09018 5.21547 5.22943 5.35244 5.42858 5.46796 5.58108 5.62043 5.92587 5.98265 6.14591 6.57458 6.84821 6.90413 8.29387 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.004475 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.209288 B = 6256.076005 C = 6636.015609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.114 3.886 4 N -0.989 5.989 5 C 0.065 3.935 6 C 0.215 3.785 7 F -0.211 7.211 8 F -0.215 7.215 9 S 2.707 3.293 10 O -0.981 6.981 11 O -0.986 6.986 12 C -0.646 4.646 13 C -0.152 4.152 14 C -0.128 4.128 15 C -0.146 4.146 16 C 0.062 3.938 17 C -0.493 4.493 18 H 0.077 0.923 19 C 0.037 3.963 20 N -0.824 5.824 21 Si 0.981 3.019 22 H -0.258 1.258 23 H -0.264 1.264 24 H -0.264 1.264 25 C -0.100 4.100 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.158 0.842 34 H 0.125 0.875 35 H 0.157 0.843 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.289 0.711 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 -10.783 7.884 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C -0.010 4.010 4 N -0.826 5.826 5 C -0.061 4.061 6 C 0.160 3.840 7 F -0.193 7.193 8 F -0.197 7.197 9 S 2.801 3.199 10 O -0.971 6.971 11 O -0.976 6.976 12 C -0.735 4.735 13 C -0.173 4.173 14 C -0.147 4.147 15 C -0.165 4.165 16 C 0.059 3.941 17 C -0.523 4.523 18 H 0.096 0.904 19 C -0.177 4.177 20 N -0.450 5.450 21 Si 0.802 3.198 22 H -0.182 1.182 23 H -0.189 1.189 24 H -0.189 1.189 25 C -0.121 4.121 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.175 0.825 34 H 0.143 0.857 35 H 0.174 0.826 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.128 0.872 39 H 0.100 0.900 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.597 -11.238 7.405 14.989 hybrid contribution 0.545 1.803 -0.053 1.884 sum -6.052 -9.436 7.352 13.406 Atomic orbital electron populations 1.21695 0.93807 1.02721 1.02376 1.21968 0.97415 0.95696 1.02949 1.21680 0.76393 0.98654 1.04314 1.57374 1.15941 1.88292 1.21028 1.22910 1.01331 0.95170 0.86688 1.23313 0.77596 0.87894 0.95246 1.93208 1.78947 1.75043 1.72088 1.92909 1.43424 1.88278 1.95090 1.01245 0.72279 0.73683 0.72704 1.93486 1.66439 1.80439 1.56749 1.93472 1.41359 1.77238 1.85525 1.30242 1.04418 1.24848 1.14008 1.20348 0.98891 0.94526 1.03542 1.21062 0.97873 0.94832 1.00907 1.21586 0.95938 0.99994 0.99029 1.18001 0.93590 0.91952 0.90597 1.19821 0.98457 0.93673 1.40326 0.90443 1.26720 1.01285 0.98314 0.91431 1.69853 1.29183 1.11169 1.34806 0.85176 0.77627 0.78103 0.78936 1.18180 1.18897 1.18904 1.20772 0.95888 0.95550 0.99855 0.91358 0.93095 0.91290 0.92888 0.89525 0.88151 0.91121 0.82478 0.85723 0.82580 0.85800 0.86111 0.87199 0.90002 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 71.98 0.71 -1.64 16 2 C -0.14 -2.74 6.26 30.60 0.19 -2.54 16 3 C 0.11 2.74 5.16 86.38 0.45 3.19 16 4 N -0.99 -27.72 2.68 -515.78 -1.38 -29.11 16 5 C 0.07 1.37 5.97 86.38 0.52 1.88 16 6 C 0.21 5.39 5.60 71.98 0.40 5.79 16 7 F -0.21 -8.15 12.39 44.97 0.56 -7.59 16 8 F -0.22 -6.09 15.72 44.97 0.71 -5.38 16 9 S 2.71 102.08 5.53 -56.49 -0.31 101.77 16 10 O -0.98 -39.28 16.24 -128.00 -2.08 -41.36 16 11 O -0.99 -40.13 15.82 -128.00 -2.02 -42.15 16 12 C -0.65 -29.29 5.39 22.22 0.12 -29.17 16 13 C -0.15 -6.87 9.53 22.46 0.21 -6.66 16 14 C -0.13 -6.03 10.02 22.22 0.22 -5.80 16 15 C -0.15 -7.73 8.70 22.73 0.20 -7.53 16 16 C 0.06 3.37 5.58 -21.29 -0.12 3.26 16 17 C -0.49 -26.69 9.05 23.46 0.21 -26.48 16 18 H 0.08 4.07 7.91 -2.91 -0.02 4.04 16 19 C 0.04 1.88 5.14 85.25 0.44 2.31 16 20 N -0.82 -42.68 10.95 21.83 0.24 -42.44 16 21 Si 0.98 37.98 29.60 68.60 2.03 40.01 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 23 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 25 C -0.10 -4.98 6.26 22.73 0.14 -4.84 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 2.12 6.73 -2.39 -0.02 2.11 16 32 H 0.07 1.90 7.61 -2.39 -0.02 1.88 16 33 H 0.16 1.77 8.11 -2.39 -0.02 1.75 16 34 H 0.12 2.59 6.91 -2.39 -0.02 2.57 16 35 H 0.16 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.12 4.95 7.61 -2.91 -0.02 4.92 16 37 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 38 H 0.11 6.00 6.15 -2.91 -0.02 5.98 16 39 H 0.29 13.46 8.30 -92.70 -0.77 12.69 16 40 H 0.11 5.41 6.96 -2.91 -0.02 5.39 16 Total: -1.00 -70.51 346.01 2.49 -68.02 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 1.06 Total: 26.48 kcal Atomic # 6 Polarization: -71.94 SS G_CDS: 3.70 Total: -68.24 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -1.14 Total: -71.55 kcal Atomic # 8 Polarization: -79.40 SS G_CDS: -4.10 Total: -83.51 kcal Atomic # 9 Polarization: -14.24 SS G_CDS: 1.26 Total: -12.97 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Atomic # 16 Polarization: 102.08 SS G_CDS: -0.31 Total: 101.77 kcal Total: -70.51 2.49 -68.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619480302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.778 kcal (2) G-P(sol) polarization free energy of solvation -70.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds