Wall clock time and date at job start Tue Mar 31 2020 19:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00123 * 2 1 4 4 C 1.50697 * 109.47143 * 180.02562 * 3 2 1 5 5 C 1.46213 * 126.96601 * 90.00347 * 4 3 2 6 6 C 1.39726 * 134.17480 * 359.97438 * 5 4 3 7 7 C 1.36624 * 119.70704 * 179.97438 * 6 5 4 8 8 C 1.38837 * 120.44225 * 359.97438 * 7 6 5 9 9 C 1.37817 * 120.74589 * 0.02562 * 8 7 6 10 10 C 1.39005 * 119.86303 * 359.97438 * 9 8 7 11 11 O 1.34732 * 133.22776 * 180.02562 * 10 9 8 12 12 C 1.34954 * 110.86145 * 179.97438 * 11 10 9 13 13 C 1.46807 * 125.14097 * 180.02562 * 12 11 10 14 14 O 1.21714 * 120.00062 * 173.16660 * 13 12 11 15 15 N 1.34777 * 120.00544 * 353.16914 * 13 12 11 16 16 C 1.36786 * 120.00155 * 183.76488 * 15 13 12 17 17 H 1.08000 * 120.00137 * 23.75333 * 16 15 13 18 18 C 1.39074 * 119.99835 * 203.74792 * 16 15 13 19 19 N 1.31358 * 120.00061 * 24.37147 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 204.36699 * 18 16 15 21 21 H 1.48500 * 109.47035 * 90.00228 * 20 18 16 22 22 H 1.48502 * 109.47228 * 210.00332 * 20 18 16 23 23 H 1.48503 * 109.47209 * 330.00314 * 20 18 16 24 24 C 1.46502 * 119.99352 * 3.77296 * 15 13 12 25 25 C 1.50702 * 109.47381 * 83.19474 * 24 15 13 26 26 O 1.20824 * 119.99852 * 359.97438 * 25 24 15 27 27 O 1.34234 * 119.99577 * 180.02562 * 25 24 15 28 28 H 1.09003 * 109.46981 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47400 * 299.99927 * 1 2 3 30 30 H 1.08999 * 109.47002 * 60.00337 * 1 2 3 31 31 H 1.09000 * 109.47096 * 60.00078 * 3 2 1 32 32 H 1.09006 * 109.46741 * 299.99874 * 3 2 1 33 33 H 1.08001 * 120.14814 * 359.95443 * 6 5 4 34 34 H 1.08005 * 119.77798 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.62820 * 179.72641 * 8 7 6 36 36 H 1.07999 * 120.07240 * 179.97438 * 9 8 7 37 37 H 0.96997 * 119.99958 * 180.02562 * 19 18 16 38 38 H 1.09009 * 109.46705 * 203.19098 * 24 15 13 39 39 H 1.08995 * 109.47309 * 323.18622 * 24 15 13 40 40 H 0.96705 * 116.99442 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5124 1.1864 -0.0006 5 6 4.3885 1.1173 -1.1692 6 6 4.1734 1.1342 -2.5497 7 6 5.2380 1.0507 -3.4019 8 6 6.5305 0.9498 -2.9051 9 6 6.7638 0.9315 -1.5470 10 6 5.6967 1.0152 -0.6602 11 8 5.6127 1.0223 0.6845 12 6 4.3280 1.1233 1.0853 13 6 3.8791 1.1596 2.4826 14 8 2.7097 1.3773 2.7406 15 7 4.7618 0.9518 3.4797 16 6 4.3304 0.9090 4.7771 17 1 3.3034 0.6573 4.9967 18 6 5.2145 1.1895 5.8133 19 7 6.2733 1.9343 5.5900 20 14 4.8963 0.5073 7.5230 21 1 5.5504 -0.8192 7.6562 22 1 5.4520 1.4375 8.5385 23 1 3.4335 0.3613 7.7333 24 6 6.1832 0.7721 3.1739 25 6 6.8379 2.1204 3.0176 26 8 6.1842 3.1281 3.1478 27 8 8.1472 2.2017 2.7328 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8463 -0.8901 33 1 3.1699 1.2125 -2.9414 34 1 5.0731 1.0640 -4.4692 35 1 7.3621 0.8801 -3.5907 36 1 7.7737 0.8524 -1.1724 37 1 6.8901 2.1296 6.3127 38 1 6.6635 0.2269 3.9866 39 1 6.2869 0.2081 2.2470 40 1 8.5223 3.0883 2.6416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737830164.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:26 Heat of formation + Delta-G solvation = -114.787799 kcal Electronic energy + Delta-G solvation = -29716.144921 eV Core-core repulsion = 25463.899247 eV Total energy + Delta-G solvation = -4252.245674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.21798 -39.38664 -38.23626 -37.60527 -37.34346 -35.37901 -34.61074 -32.90080 -32.05098 -30.32966 -29.54621 -27.83011 -27.40193 -25.71405 -24.78960 -23.29973 -22.40618 -21.20973 -20.35866 -19.43138 -17.60455 -17.37037 -17.01025 -16.78953 -16.34213 -15.88232 -15.76632 -15.41683 -15.28310 -15.07046 -14.60359 -14.49599 -14.29719 -14.14506 -13.68402 -13.35154 -13.28560 -12.80157 -12.19260 -12.15483 -12.04970 -11.92001 -11.81699 -11.63941 -11.47919 -11.17126 -11.04001 -10.75334 -10.57758 -10.50656 -10.35164 -9.79042 -9.66979 -9.46516 -9.19650 -8.78062 -8.47140 -8.11803 -7.88044 -6.67641 -4.09492 0.89896 1.49900 2.14411 2.90586 3.07215 3.14830 3.20165 3.49474 3.68174 3.81474 3.94449 4.18420 4.38507 4.41616 4.79451 4.82480 4.95133 5.01319 5.15757 5.29519 5.45477 5.50036 5.54013 5.59083 5.64197 5.79635 5.87889 5.92353 5.97699 6.18067 6.22405 6.37893 6.43852 6.46245 6.54880 6.61403 6.75561 7.30991 7.31529 7.48489 7.49278 7.80051 8.13895 8.81974 8.94674 9.09638 9.58025 10.38346 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.012525 B = 0.005066 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.938191 B = 5525.725410 C = 7380.264425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.383 6.383 3 C 0.135 3.865 4 C -0.142 4.142 5 C -0.111 4.111 6 C -0.070 4.070 7 C -0.139 4.139 8 C -0.103 4.103 9 C -0.103 4.103 10 C 0.048 3.952 11 O -0.182 6.182 12 C 0.049 3.951 13 C 0.512 3.488 14 O -0.547 6.547 15 N -0.398 5.398 16 C -0.309 4.309 17 H 0.114 0.886 18 C 0.036 3.964 19 N -0.849 5.849 20 Si 0.933 3.067 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.265 1.265 24 C 0.135 3.865 25 C 0.493 3.507 26 O -0.493 6.493 27 O -0.534 6.534 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.276 0.724 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.569 -2.947 -13.066 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C 0.059 3.941 4 C -0.146 4.146 5 C -0.112 4.112 6 C -0.088 4.088 7 C -0.158 4.158 8 C -0.121 4.121 9 C -0.122 4.122 10 C 0.001 3.999 11 O -0.084 6.084 12 C -0.002 4.002 13 C 0.301 3.699 14 O -0.432 6.432 15 N -0.114 5.114 16 C -0.436 4.436 17 H 0.132 0.868 18 C -0.171 4.171 19 N -0.484 5.484 20 Si 0.758 3.242 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.189 1.189 24 C 0.009 3.991 25 C 0.333 3.667 26 O -0.377 6.377 27 O -0.345 6.345 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.116 0.884 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 1.132 -3.047 -12.503 12.919 hybrid contribution 0.224 0.772 0.727 1.083 sum 1.356 -2.276 -11.776 12.070 Atomic orbital electron populations 1.22667 0.81530 1.02246 0.99770 1.87927 1.19133 1.27712 1.95399 1.20718 0.86858 0.85119 1.01421 1.20661 0.94958 1.09321 0.89684 1.19751 0.92467 1.04940 0.94072 1.20270 0.99409 0.98705 0.90439 1.20686 0.92392 1.03114 0.99569 1.20860 0.97238 1.00297 0.93681 1.19963 0.96721 1.04333 0.91172 1.19846 0.95475 1.02590 0.82036 1.84372 1.28219 1.75472 1.20292 1.22769 0.80139 1.01134 0.96172 1.16483 0.87007 0.85642 0.80776 1.90675 1.16739 1.54902 1.80846 1.43352 1.03769 1.57805 1.06493 1.19791 0.99233 1.45526 0.79029 0.86841 1.25490 0.96258 0.94526 1.00849 1.69920 1.14095 1.29531 1.34899 0.85817 0.79479 0.78697 0.80186 1.19839 1.20782 1.18885 1.20828 0.83535 0.91927 1.02829 1.23364 0.79108 0.93033 0.71239 1.90620 1.64315 1.37813 1.44984 1.84489 1.27638 1.38073 1.84323 0.90044 0.93723 0.94721 0.89502 0.93349 0.85829 0.85674 0.85094 0.84991 0.91402 0.86258 0.88364 0.75050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.38 -7.11 10.69 -35.23 -0.38 -7.49 16 3 C 0.13 2.51 5.94 36.00 0.21 2.73 16 4 C -0.14 -2.90 6.02 -102.24 -0.62 -3.51 16 5 C -0.11 -1.98 6.37 -105.19 -0.67 -2.65 16 6 C -0.07 -0.99 10.06 -39.61 -0.40 -1.39 16 7 C -0.14 -1.62 9.98 -39.94 -0.40 -2.02 16 8 C -0.10 -1.17 10.01 -39.51 -0.40 -1.57 16 9 C -0.10 -1.44 10.07 -39.45 -0.40 -1.83 16 10 C 0.05 0.86 7.41 -38.35 -0.28 0.57 16 11 O -0.18 -3.71 6.38 2.70 0.02 -3.69 16 12 C 0.05 1.10 6.70 -36.94 -0.25 0.86 16 13 C 0.51 13.19 7.33 -12.80 -0.09 13.10 16 14 O -0.55 -15.12 14.33 5.18 0.07 -15.04 16 15 N -0.40 -10.23 2.16 -117.54 -0.25 -10.49 16 16 C -0.31 -8.27 9.14 -15.03 -0.14 -8.41 16 17 H 0.11 3.12 7.55 -52.49 -0.40 2.73 16 18 C 0.04 0.91 4.73 -17.44 -0.08 0.83 16 19 N -0.85 -21.90 9.44 55.50 0.52 -21.38 16 20 Si 0.93 19.50 29.62 -169.99 -5.03 14.47 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 24 C 0.13 3.04 4.80 -5.19 -0.02 3.01 16 25 C 0.49 11.31 5.52 36.01 0.20 11.50 16 26 O -0.49 -13.24 16.26 -18.75 -0.30 -13.54 16 27 O -0.53 -9.89 13.42 -39.27 -0.53 -10.42 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 1.79 6.26 -51.93 -0.32 1.47 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.12 2.65 6.91 -51.92 -0.36 2.29 16 39 H 0.10 2.00 5.41 -51.93 -0.28 1.72 16 40 H 0.39 5.65 9.10 45.56 0.41 6.07 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -33.80 347.05 -6.34 -40.14 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -3.46 Total: 9.41 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: -2.22 Total: 12.81 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.27 Total: -31.87 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -1.12 Total: -50.18 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.80 -6.34 -40.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737830164.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.651 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds