Wall clock time and date at job start Tue Mar 31 2020 19:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00123 * 2 1 4 4 C 1.50697 * 109.47143 * 180.02562 * 3 2 1 5 5 C 1.46213 * 126.96601 * 90.00347 * 4 3 2 6 6 C 1.39726 * 134.17480 * 359.97438 * 5 4 3 7 7 C 1.36624 * 119.70704 * 179.97438 * 6 5 4 8 8 C 1.38837 * 120.44225 * 359.97438 * 7 6 5 9 9 C 1.37817 * 120.74589 * 0.02562 * 8 7 6 10 10 C 1.39005 * 119.86303 * 359.97438 * 9 8 7 11 11 O 1.34732 * 133.22776 * 180.02562 * 10 9 8 12 12 C 1.34954 * 110.86145 * 179.97438 * 11 10 9 13 13 C 1.46807 * 125.14097 * 180.02562 * 12 11 10 14 14 O 1.21714 * 120.00062 * 173.16660 * 13 12 11 15 15 N 1.34777 * 120.00544 * 353.16914 * 13 12 11 16 16 C 1.36786 * 120.00155 * 183.76488 * 15 13 12 17 17 H 1.08000 * 120.00137 * 23.75333 * 16 15 13 18 18 C 1.39074 * 119.99835 * 203.74792 * 16 15 13 19 19 N 1.31358 * 120.00061 * 24.37147 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 204.36699 * 18 16 15 21 21 H 1.48500 * 109.47035 * 90.00228 * 20 18 16 22 22 H 1.48502 * 109.47228 * 210.00332 * 20 18 16 23 23 H 1.48503 * 109.47209 * 330.00314 * 20 18 16 24 24 C 1.46502 * 119.99352 * 3.77296 * 15 13 12 25 25 C 1.50702 * 109.47381 * 83.19474 * 24 15 13 26 26 O 1.20824 * 119.99852 * 359.97438 * 25 24 15 27 27 O 1.34234 * 119.99577 * 180.02562 * 25 24 15 28 28 H 1.09003 * 109.46981 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47400 * 299.99927 * 1 2 3 30 30 H 1.08999 * 109.47002 * 60.00337 * 1 2 3 31 31 H 1.09000 * 109.47096 * 60.00078 * 3 2 1 32 32 H 1.09006 * 109.46741 * 299.99874 * 3 2 1 33 33 H 1.08001 * 120.14814 * 359.95443 * 6 5 4 34 34 H 1.08005 * 119.77798 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.62820 * 179.72641 * 8 7 6 36 36 H 1.07999 * 120.07240 * 179.97438 * 9 8 7 37 37 H 0.96997 * 119.99958 * 180.02562 * 19 18 16 38 38 H 1.09009 * 109.46705 * 203.19098 * 24 15 13 39 39 H 1.08995 * 109.47309 * 323.18622 * 24 15 13 40 40 H 0.96705 * 116.99442 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5124 1.1864 -0.0006 5 6 4.3885 1.1173 -1.1692 6 6 4.1734 1.1342 -2.5497 7 6 5.2380 1.0507 -3.4019 8 6 6.5305 0.9498 -2.9051 9 6 6.7638 0.9315 -1.5470 10 6 5.6967 1.0152 -0.6602 11 8 5.6127 1.0223 0.6845 12 6 4.3280 1.1233 1.0853 13 6 3.8791 1.1596 2.4826 14 8 2.7097 1.3773 2.7406 15 7 4.7618 0.9518 3.4797 16 6 4.3304 0.9090 4.7771 17 1 3.3034 0.6573 4.9967 18 6 5.2145 1.1895 5.8133 19 7 6.2733 1.9343 5.5900 20 14 4.8963 0.5073 7.5230 21 1 5.5504 -0.8192 7.6562 22 1 5.4520 1.4375 8.5385 23 1 3.4335 0.3613 7.7333 24 6 6.1832 0.7721 3.1739 25 6 6.8379 2.1204 3.0176 26 8 6.1842 3.1281 3.1478 27 8 8.1472 2.2017 2.7328 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8463 -0.8901 33 1 3.1699 1.2125 -2.9414 34 1 5.0731 1.0640 -4.4692 35 1 7.3621 0.8801 -3.5907 36 1 7.7737 0.8524 -1.1724 37 1 6.8901 2.1296 6.3127 38 1 6.6635 0.2269 3.9866 39 1 6.2869 0.2081 2.2470 40 1 8.5223 3.0883 2.6416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737830164.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:22 Heat of formation + Delta-G solvation = -138.343027 kcal Electronic energy + Delta-G solvation = -29717.166352 eV Core-core repulsion = 25463.899247 eV Total energy + Delta-G solvation = -4253.267105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.61314 -41.18026 -40.01206 -38.88453 -38.66393 -37.18822 -36.45814 -34.30772 -33.96451 -31.44975 -30.85436 -29.65414 -28.81854 -27.30257 -26.26439 -24.71051 -23.65458 -22.93949 -21.79254 -20.96652 -19.32137 -19.04084 -18.69607 -18.26412 -17.86989 -17.41144 -17.24321 -16.94726 -16.85201 -16.43464 -16.27216 -16.02957 -15.72099 -15.60307 -15.19923 -14.88854 -14.75626 -14.28900 -13.82756 -13.67525 -13.45357 -13.29367 -13.20967 -13.08291 -12.83318 -12.65965 -12.52187 -12.41344 -12.19998 -12.14106 -11.85316 -11.59815 -11.11295 -11.07653 -11.02986 -10.47850 -10.02005 -9.62947 -9.22890 -8.58220 -6.11846 -0.43473 0.38249 0.77688 1.37933 1.41643 1.48196 1.56451 1.69562 1.96103 2.19772 2.45357 2.70431 2.72712 2.95040 3.06742 3.39024 3.63963 3.71352 3.95387 4.13153 4.19213 4.27095 4.35907 4.40220 4.43824 4.50378 4.54985 4.58852 4.73107 4.78504 4.80672 4.87362 5.14782 5.32202 5.34528 5.40906 5.50560 5.58747 5.86194 5.88458 6.07655 6.17038 6.23911 6.86409 7.05492 7.36094 7.66040 8.47585 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.012525 B = 0.005066 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.938191 B = 5525.725410 C = 7380.264425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.137 3.863 4 C -0.131 4.131 5 C -0.141 4.141 6 C -0.074 4.074 7 C -0.126 4.126 8 C -0.076 4.076 9 C -0.117 4.117 10 C 0.025 3.975 11 O -0.193 6.193 12 C 0.001 3.999 13 C 0.504 3.496 14 O -0.586 6.586 15 N -0.412 5.412 16 C -0.350 4.350 17 H 0.090 0.910 18 C 0.006 3.994 19 N -0.871 5.871 20 Si 1.002 2.998 21 H -0.255 1.255 22 H -0.277 1.277 23 H -0.271 1.271 24 C 0.137 3.863 25 C 0.503 3.497 26 O -0.539 6.539 27 O -0.517 6.517 28 H 0.101 0.899 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.170 0.830 35 H 0.179 0.821 36 H 0.151 0.849 37 H 0.280 0.720 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.167 -3.652 -16.503 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C 0.061 3.939 4 C -0.135 4.135 5 C -0.142 4.142 6 C -0.092 4.092 7 C -0.144 4.144 8 C -0.094 4.094 9 C -0.135 4.135 10 C -0.022 4.022 11 O -0.096 6.096 12 C -0.050 4.050 13 C 0.294 3.706 14 O -0.473 6.473 15 N -0.128 5.128 16 C -0.477 4.477 17 H 0.107 0.893 18 C -0.199 4.199 19 N -0.506 5.506 20 Si 0.823 3.177 21 H -0.179 1.179 22 H -0.202 1.202 23 H -0.196 1.196 24 C 0.012 3.988 25 C 0.345 3.655 26 O -0.427 6.427 27 O -0.329 6.329 28 H 0.120 0.880 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.161 0.839 34 H 0.188 0.812 35 H 0.196 0.804 36 H 0.169 0.831 37 H 0.090 0.910 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 2.784 -3.761 -15.967 16.639 hybrid contribution -0.217 1.013 1.413 1.752 sum 2.567 -2.747 -14.554 15.032 Atomic orbital electron populations 1.22928 0.79184 1.03951 1.00735 1.87874 1.21767 1.27507 1.95571 1.20679 0.86331 0.85434 1.01492 1.21177 0.95862 1.05926 0.90565 1.19920 0.91687 1.07510 0.95062 1.20653 1.01576 0.98108 0.88877 1.21259 0.91519 1.00160 1.01440 1.21513 0.98819 0.96076 0.93003 1.20439 0.96648 1.04647 0.91787 1.20527 0.97071 1.03519 0.81119 1.84227 1.26961 1.76261 1.22143 1.22107 0.81780 1.06087 0.94983 1.16988 0.86738 0.84504 0.82344 1.90609 1.18135 1.56274 1.82301 1.43478 1.04949 1.58143 1.06236 1.19758 0.99065 1.48348 0.80488 0.89254 1.26320 0.95678 0.93824 1.04083 1.69990 1.14720 1.29809 1.36096 0.84824 0.78932 0.78667 0.75229 1.17897 1.20177 1.19560 1.20884 0.82141 0.92193 1.03541 1.23314 0.79864 0.92381 0.69982 1.90598 1.65642 1.39174 1.47327 1.84414 1.25333 1.39771 1.83378 0.88018 0.94768 0.91680 0.92643 0.89886 0.83891 0.81238 0.80419 0.83102 0.90986 0.86335 0.86583 0.72626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.41 -15.45 10.69 -148.98 -1.59 -17.04 16 3 C 0.14 5.26 5.94 71.24 0.42 5.69 16 4 C -0.13 -5.53 6.02 -18.32 -0.11 -5.65 16 5 C -0.14 -4.88 6.37 -20.23 -0.13 -5.01 16 6 C -0.07 -1.83 10.06 22.25 0.22 -1.61 16 7 C -0.13 -2.21 9.98 22.04 0.22 -1.99 16 8 C -0.08 -1.31 10.01 22.31 0.22 -1.09 16 9 C -0.12 -2.88 10.07 22.35 0.23 -2.65 16 10 C 0.02 0.86 7.41 23.07 0.17 1.03 16 11 O -0.19 -8.16 6.38 -13.24 -0.08 -8.24 16 12 C 0.00 0.04 6.70 23.98 0.16 0.20 16 13 C 0.50 28.07 7.33 86.48 0.63 28.71 16 14 O -0.59 -35.35 14.33 -4.39 -0.06 -35.41 16 15 N -0.41 -22.68 2.16 -643.99 -1.39 -24.08 16 16 C -0.35 -20.03 9.14 84.12 0.77 -19.26 16 17 H 0.09 5.37 7.55 -2.91 -0.02 5.35 16 18 C 0.01 0.32 4.73 84.96 0.40 0.72 16 19 N -0.87 -46.22 9.44 21.69 0.20 -46.01 16 20 Si 1.00 41.13 29.62 68.60 2.03 43.16 16 21 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 22 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 C 0.14 6.50 4.80 85.63 0.41 6.91 16 25 C 0.50 23.75 5.52 71.24 0.39 24.14 16 26 O -0.54 -30.23 16.26 21.97 0.36 -29.87 16 27 O -0.52 -18.91 13.42 -51.46 -0.69 -19.60 16 28 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 31 H 0.06 2.47 6.26 -2.39 -0.01 2.46 16 32 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 33 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 36 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 38 H 0.12 5.50 6.91 -2.38 -0.02 5.48 16 39 H 0.12 4.97 5.41 -2.39 -0.01 4.95 16 40 H 0.41 11.49 9.10 -74.05 -0.67 10.82 16 Total: -1.00 -81.09 347.05 4.47 -76.62 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.44 Total: 28.33 kcal Atomic # 6 Polarization: 26.88 SS G_CDS: 5.27 Total: 32.15 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -1.19 Total: -70.09 kcal Atomic # 8 Polarization: -108.09 SS G_CDS: -2.07 Total: -110.17 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -81.09 4.47 -76.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737830164.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.727 kcal (2) G-P(sol) polarization free energy of solvation -81.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds