Wall clock time and date at job start Tue Mar 31 2020 17:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31682 * 119.71873 * 2 1 4 4 C 1.31935 * 121.88447 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.45710 * 180.02562 * 4 3 2 6 6 F 1.39903 * 109.47354 * 4.99777 * 5 4 3 7 7 F 1.39897 * 109.47455 * 125.00144 * 5 4 3 8 8 F 1.39904 * 109.47193 * 244.99976 * 5 4 3 9 9 C 1.38363 * 121.08825 * 359.97438 * 4 3 2 10 10 C 1.38342 * 119.31161 * 359.71860 * 9 4 3 11 11 C 1.39574 * 119.71967 * 180.02562 * 2 1 3 12 12 C 1.47717 * 120.56217 * 359.97438 * 11 2 1 13 13 O 1.21466 * 120.00214 * 354.06046 * 12 11 2 14 14 O 1.34710 * 119.99818 * 174.05380 * 12 11 2 15 15 C 1.45200 * 116.99928 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47052 * 180.02562 * 15 14 12 17 17 O 1.42896 * 109.47112 * 65.00013 * 16 15 14 18 18 C 1.42906 * 114.00054 * 180.02562 * 17 16 15 19 19 C 1.50695 * 109.47395 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99824 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00145 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00361 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99954 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47140 * 60.00372 * 23 21 19 25 25 H 1.48501 * 109.46912 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46926 * 300.00078 * 23 21 19 27 27 H 1.08995 * 109.47260 * 263.42411 * 1 2 3 28 28 H 1.09002 * 109.47106 * 23.41842 * 1 2 3 29 29 H 1.08993 * 109.47265 * 143.41587 * 1 2 3 30 30 H 1.07999 * 120.34404 * 180.02562 * 9 4 3 31 31 H 1.07992 * 120.86164 * 180.29503 * 10 9 4 32 32 H 1.08994 * 109.47668 * 300.00142 * 15 14 12 33 33 H 1.08999 * 109.47223 * 60.00588 * 15 14 12 34 34 H 1.08996 * 109.47240 * 185.00257 * 16 15 14 35 35 H 1.09003 * 109.47315 * 304.99925 * 16 15 14 36 36 H 1.09002 * 109.46915 * 300.00592 * 18 17 16 37 37 H 1.09007 * 109.46917 * 59.99801 * 18 17 16 38 38 H 0.96999 * 120.00715 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1436 0.0000 4 6 3.4782 1.1935 -0.0005 5 6 4.1692 2.5327 0.0001 6 9 3.2154 3.5496 0.1161 7 9 5.0558 2.5996 1.0802 8 9 4.8779 2.6923 -1.1955 9 6 4.2369 0.0364 -0.0005 10 6 3.5996 -1.1914 0.0059 11 6 2.1990 -1.2121 -0.0005 12 6 1.4667 -2.4950 -0.0005 13 8 0.2570 -2.5039 0.1088 14 8 2.1405 -3.6552 -0.1219 15 6 1.3560 -4.8770 -0.1146 16 6 2.2874 -6.0820 -0.2610 17 8 3.1356 -6.1704 0.8856 18 6 4.0500 -7.2680 0.8489 19 6 4.8903 -7.2639 2.0999 20 1 4.7407 -6.4998 2.8484 21 6 5.8492 -8.2362 2.2894 22 7 6.0311 -9.1670 1.3783 23 14 6.8903 -8.2315 3.8405 24 1 6.0089 -8.3606 5.0286 25 1 7.8405 -9.3721 3.8022 26 1 7.6494 -6.9579 3.9232 27 1 -0.3633 -0.1177 1.0208 28 1 -0.3633 0.9430 -0.4084 29 1 -0.3633 -0.8251 -0.6124 30 1 5.3155 0.0912 -0.0005 31 1 4.1671 -2.1102 0.0108 32 1 0.8098 -4.9526 0.8256 33 1 0.6498 -4.8603 -0.9447 34 1 1.6936 -6.9921 -0.3448 35 1 2.8979 -5.9628 -1.1562 36 1 3.4930 -8.2030 0.7879 37 1 4.6970 -7.1729 -0.0232 38 1 6.7060 -9.8508 1.5114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815185801.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:40 Heat of formation + Delta-G solvation = -243.902708 kcal Electronic energy + Delta-G solvation = -27679.689262 eV Core-core repulsion = 22879.988005 eV Total energy + Delta-G solvation = -4799.701257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.51982 -48.05662 -47.95707 -41.39407 -39.98953 -37.27335 -36.28033 -33.72588 -33.57242 -32.83106 -30.29900 -28.75176 -27.61302 -26.91155 -23.88661 -23.19545 -22.53130 -22.25077 -21.39285 -19.01399 -18.90968 -18.69268 -18.28630 -17.23668 -16.78129 -16.53536 -16.43351 -15.60695 -15.08587 -14.90246 -14.86588 -14.74992 -14.71798 -14.49562 -14.41869 -14.27664 -14.11109 -14.10733 -13.67712 -13.55175 -13.10336 -12.85856 -12.79773 -12.58212 -12.30747 -12.03010 -11.54251 -11.03545 -10.90692 -10.84065 -10.67218 -10.54492 -10.53448 -10.20837 -10.09831 -9.72930 -9.22221 -8.96253 -8.29853 -6.18489 -4.20871 -0.26598 0.58841 1.97266 2.07668 2.41102 3.02283 3.09809 3.27340 3.30589 3.33980 3.43913 3.96619 4.00744 4.12502 4.20080 4.25326 4.41424 4.58245 4.64546 4.91937 5.05970 5.18162 5.26046 5.31396 5.33619 5.41229 5.55642 5.70080 5.73418 5.80354 5.88819 6.01856 6.35875 6.96289 7.05284 7.31069 7.51869 7.70426 8.04553 8.42819 8.90975 9.44314 10.92888 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.002600 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.132608 B =10767.357640 C =12511.317350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.198 3.802 3 N -0.452 5.452 4 C 0.068 3.932 5 C 0.522 3.478 6 F -0.160 7.160 7 F -0.168 7.168 8 F -0.169 7.169 9 C -0.141 4.141 10 C -0.005 4.005 11 C -0.148 4.148 12 C 0.511 3.489 13 O -0.495 6.495 14 O -0.334 6.334 15 C 0.076 3.924 16 C 0.060 3.940 17 O -0.392 6.392 18 C 0.195 3.805 19 C -0.518 4.518 20 H 0.066 0.934 21 C 0.058 3.942 22 N -0.898 5.898 23 Si 0.909 3.091 24 H -0.274 1.274 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.158 0.842 31 H 0.172 0.828 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 20.510 -6.312 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.059 3.941 3 N -0.161 5.161 4 C -0.071 4.071 5 C 0.467 3.533 6 F -0.142 7.142 7 F -0.149 7.149 8 F -0.150 7.150 9 C -0.161 4.161 10 C -0.031 4.031 11 C -0.151 4.151 12 C 0.355 3.645 13 O -0.385 6.385 14 O -0.249 6.249 15 C 0.003 3.997 16 C -0.017 4.017 17 O -0.312 6.312 18 C 0.121 3.879 19 C -0.556 4.556 20 H 0.084 0.916 21 C -0.144 4.144 22 N -0.537 5.537 23 Si 0.736 3.264 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.176 0.824 31 H 0.189 0.811 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.974 21.234 -6.167 23.505 hybrid contribution 1.236 -0.966 0.548 1.661 sum -6.738 20.268 -5.619 22.086 Atomic orbital electron populations 1.21152 0.86268 1.04615 1.04907 1.21519 0.97886 0.85318 0.89396 1.67213 1.07439 1.29250 1.12221 1.21220 0.91697 0.92979 1.01208 1.17837 0.76862 0.84411 0.74205 1.93248 1.63614 1.61734 1.95564 1.93257 1.69517 1.96635 1.55489 1.93254 1.79321 1.96026 1.46393 1.21850 1.02552 0.91432 1.00265 1.22158 0.93046 0.99486 0.88370 1.20247 0.94646 0.92438 1.07773 1.20643 0.85744 0.84543 0.73560 1.90798 1.14580 1.87783 1.45372 1.86625 1.41437 1.14546 1.82316 1.23326 0.93384 0.79837 1.03170 1.22338 0.93539 0.94137 0.91713 1.87914 1.51374 1.52976 1.38888 1.20240 0.86705 0.83219 0.97728 1.20993 1.17797 1.12593 1.04208 0.91563 1.24942 0.97098 0.95006 0.97347 1.69940 1.34212 1.15123 1.34438 0.86387 0.79756 0.77657 0.82641 1.19976 1.21106 1.19957 0.89040 0.90373 0.87603 0.82405 0.81102 0.90080 0.90020 0.91662 0.93088 0.97569 0.97476 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 8.88 36.01 0.32 -0.75 16 2 C 0.20 2.21 6.82 -82.16 -0.56 1.65 16 3 N -0.45 -5.23 9.63 -5.41 -0.05 -5.28 16 4 C 0.07 0.71 6.27 -82.50 -0.52 0.20 16 5 C 0.52 5.13 3.31 36.00 0.12 5.25 16 6 F -0.16 -1.74 16.85 2.25 0.04 -1.70 16 7 F -0.17 -1.62 17.15 2.25 0.04 -1.58 16 8 F -0.17 -1.60 17.28 2.25 0.04 -1.57 16 9 C -0.14 -1.28 9.59 -39.50 -0.38 -1.66 16 10 C -0.01 -0.05 9.74 -38.85 -0.38 -0.43 16 11 C -0.15 -1.70 5.89 -104.84 -0.62 -2.32 16 12 C 0.51 6.71 7.83 34.60 0.27 6.98 16 13 O -0.50 -6.83 13.16 -19.24 -0.25 -7.09 16 14 O -0.33 -4.84 9.54 -43.30 -0.41 -5.25 16 15 C 0.08 1.06 5.85 37.16 0.22 1.27 16 16 C 0.06 1.00 6.33 37.16 0.24 1.24 16 17 O -0.39 -8.88 10.30 -38.80 -0.40 -9.28 16 18 C 0.20 5.10 5.69 36.00 0.20 5.31 16 19 C -0.52 -14.76 9.43 -34.44 -0.32 -15.08 16 20 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16 23 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.11 1.06 5.85 -51.93 -0.30 0.76 16 30 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.17 1.62 7.72 -52.49 -0.41 1.22 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 352.01 15.07 5.30 5.30 Total: -1.00 -31.53 352.01 -5.55 -37.08 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: -4.06 Total: -4.67 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.51 Total: 3.18 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.68 Total: -30.67 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -1.07 Total: -21.62 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.12 Total: -4.85 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.53 -5.55 -37.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815185801.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.826 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds