Wall clock time and date at job start Tue Mar 31 2020 17:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31682 * 119.71873 * 2 1 4 4 C 1.31935 * 121.88447 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.45710 * 180.02562 * 4 3 2 6 6 F 1.39903 * 109.47354 * 4.99777 * 5 4 3 7 7 F 1.39897 * 109.47455 * 125.00144 * 5 4 3 8 8 F 1.39904 * 109.47193 * 244.99976 * 5 4 3 9 9 C 1.38363 * 121.08825 * 359.97438 * 4 3 2 10 10 C 1.38342 * 119.31161 * 359.71860 * 9 4 3 11 11 C 1.39574 * 119.71967 * 180.02562 * 2 1 3 12 12 C 1.47717 * 120.56217 * 359.97438 * 11 2 1 13 13 O 1.21466 * 120.00214 * 354.06046 * 12 11 2 14 14 O 1.34710 * 119.99818 * 174.05380 * 12 11 2 15 15 C 1.45200 * 116.99928 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47052 * 180.02562 * 15 14 12 17 17 O 1.42896 * 109.47112 * 65.00013 * 16 15 14 18 18 C 1.42906 * 114.00054 * 180.02562 * 17 16 15 19 19 C 1.50695 * 109.47395 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99824 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00145 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00361 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99954 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47140 * 60.00372 * 23 21 19 25 25 H 1.48501 * 109.46912 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46926 * 300.00078 * 23 21 19 27 27 H 1.08995 * 109.47260 * 263.42411 * 1 2 3 28 28 H 1.09002 * 109.47106 * 23.41842 * 1 2 3 29 29 H 1.08993 * 109.47265 * 143.41587 * 1 2 3 30 30 H 1.07999 * 120.34404 * 180.02562 * 9 4 3 31 31 H 1.07992 * 120.86164 * 180.29503 * 10 9 4 32 32 H 1.08994 * 109.47668 * 300.00142 * 15 14 12 33 33 H 1.08999 * 109.47223 * 60.00588 * 15 14 12 34 34 H 1.08996 * 109.47240 * 185.00257 * 16 15 14 35 35 H 1.09003 * 109.47315 * 304.99925 * 16 15 14 36 36 H 1.09002 * 109.46915 * 300.00592 * 18 17 16 37 37 H 1.09007 * 109.46917 * 59.99801 * 18 17 16 38 38 H 0.96999 * 120.00715 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1436 0.0000 4 6 3.4782 1.1935 -0.0005 5 6 4.1692 2.5327 0.0001 6 9 3.2154 3.5496 0.1161 7 9 5.0558 2.5996 1.0802 8 9 4.8779 2.6923 -1.1955 9 6 4.2369 0.0364 -0.0005 10 6 3.5996 -1.1914 0.0059 11 6 2.1990 -1.2121 -0.0005 12 6 1.4667 -2.4950 -0.0005 13 8 0.2570 -2.5039 0.1088 14 8 2.1405 -3.6552 -0.1219 15 6 1.3560 -4.8770 -0.1146 16 6 2.2874 -6.0820 -0.2610 17 8 3.1356 -6.1704 0.8856 18 6 4.0500 -7.2680 0.8489 19 6 4.8903 -7.2639 2.0999 20 1 4.7407 -6.4998 2.8484 21 6 5.8492 -8.2362 2.2894 22 7 6.0311 -9.1670 1.3783 23 14 6.8903 -8.2315 3.8405 24 1 6.0089 -8.3606 5.0286 25 1 7.8405 -9.3721 3.8022 26 1 7.6494 -6.9579 3.9232 27 1 -0.3633 -0.1177 1.0208 28 1 -0.3633 0.9430 -0.4084 29 1 -0.3633 -0.8251 -0.6124 30 1 5.3155 0.0912 -0.0005 31 1 4.1671 -2.1102 0.0108 32 1 0.8098 -4.9526 0.8256 33 1 0.6498 -4.8603 -0.9447 34 1 1.6936 -6.9921 -0.3448 35 1 2.8979 -5.9628 -1.1562 36 1 3.4930 -8.2030 0.7879 37 1 4.6970 -7.1729 -0.0232 38 1 6.7060 -9.8508 1.5114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815185801.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:35 Heat of formation + Delta-G solvation = -262.063738 kcal Electronic energy + Delta-G solvation = -27680.476783 eV Core-core repulsion = 22879.988005 eV Total energy + Delta-G solvation = -4800.488778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.30476 -48.82417 -48.76355 -42.29474 -40.97316 -38.75857 -37.58981 -34.95170 -34.52646 -34.40732 -31.67835 -29.55614 -29.10624 -28.26956 -24.86218 -24.50609 -24.06303 -23.36973 -22.42772 -19.82863 -19.68619 -19.48470 -19.25082 -18.70213 -18.12198 -17.97366 -17.42949 -17.13893 -16.42120 -16.28943 -15.89486 -15.68800 -15.56476 -15.53183 -15.50915 -15.19924 -14.98406 -14.90444 -14.87389 -14.45166 -14.23329 -14.20606 -13.73292 -13.59284 -13.42277 -13.24955 -13.08247 -12.91301 -12.68001 -12.43992 -11.98809 -11.77920 -11.57020 -11.38254 -11.28440 -11.05883 -10.87842 -10.53645 -10.25793 -8.31587 -6.43572 -1.11822 -0.20598 1.11752 1.15810 1.41754 1.42248 1.45345 1.53845 2.16641 2.30651 2.34793 2.65282 3.02787 3.06970 3.19152 3.23821 3.26156 3.36001 3.62805 3.72626 3.92341 4.13193 4.19916 4.40833 4.46238 4.54057 4.56586 4.65064 4.68552 4.82784 4.87485 4.92866 5.10380 5.19688 5.38953 5.55043 5.96168 6.23157 6.46848 6.52737 6.80484 7.28214 8.80169 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.002600 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.132608 B =10767.357640 C =12511.317350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.193 3.807 3 N -0.467 5.467 4 C 0.061 3.939 5 C 0.528 3.472 6 F -0.167 7.167 7 F -0.165 7.165 8 F -0.166 7.166 9 C -0.131 4.131 10 C -0.004 4.004 11 C -0.160 4.160 12 C 0.514 3.486 13 O -0.505 6.505 14 O -0.348 6.348 15 C 0.080 3.920 16 C 0.052 3.948 17 O -0.408 6.408 18 C 0.209 3.791 19 C -0.550 4.550 20 H 0.061 0.939 21 C 0.009 3.991 22 N -0.929 5.929 23 Si 0.979 3.021 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.265 1.265 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.186 0.814 31 H 0.177 0.823 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.058 0.942 36 H -0.009 1.009 37 H -0.009 1.009 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.769 21.216 -5.883 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.054 3.946 3 N -0.176 5.176 4 C -0.078 4.078 5 C 0.473 3.527 6 F -0.148 7.148 7 F -0.147 7.147 8 F -0.147 7.147 9 C -0.151 4.151 10 C -0.029 4.029 11 C -0.163 4.163 12 C 0.358 3.642 13 O -0.395 6.395 14 O -0.264 6.264 15 C 0.007 3.993 16 C -0.025 4.025 17 O -0.328 6.328 18 C 0.134 3.866 19 C -0.587 4.587 20 H 0.079 0.921 21 C -0.190 4.190 22 N -0.568 5.568 23 Si 0.802 3.198 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.189 1.189 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.203 0.797 31 H 0.194 0.806 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.486 21.958 -5.752 23.901 hybrid contribution 1.034 -1.140 0.339 1.576 sum -6.452 20.818 -5.413 22.457 Atomic orbital electron populations 1.21135 0.85443 1.05009 1.04948 1.21701 0.98531 0.85117 0.89263 1.67220 1.08131 1.29388 1.12866 1.21426 0.91621 0.93646 1.01106 1.17725 0.76715 0.83994 0.74302 1.93234 1.63964 1.62024 1.95614 1.93262 1.69384 1.96600 1.55416 1.93262 1.79202 1.95985 1.46233 1.22108 1.03827 0.90395 0.98782 1.22275 0.92576 1.00172 0.87907 1.20232 0.95268 0.91738 1.09063 1.20837 0.85717 0.84529 0.73089 1.90791 1.14953 1.87864 1.45899 1.86606 1.42069 1.15064 1.82660 1.23301 0.92770 0.78802 1.04389 1.22673 0.93430 0.96425 0.89985 1.87855 1.51630 1.51539 1.41800 1.19849 0.86752 0.83651 0.96343 1.21359 1.19100 1.13127 1.05151 0.92059 1.25896 0.98076 0.94225 1.00784 1.70042 1.34821 1.15640 1.36333 0.85294 0.78012 0.78219 0.78277 1.19199 1.20126 1.18927 0.88860 0.89220 0.88112 0.79671 0.80607 0.90489 0.86704 0.89952 0.92352 0.99135 0.99121 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 8.88 71.24 0.63 -1.36 16 2 C 0.19 4.16 6.82 42.90 0.29 4.45 16 3 N -0.47 -10.33 9.63 -171.02 -1.65 -11.97 16 4 C 0.06 1.19 6.27 42.57 0.27 1.46 16 5 C 0.53 9.64 3.31 71.23 0.24 9.88 16 6 F -0.17 -3.45 16.85 44.97 0.76 -2.70 16 7 F -0.17 -2.93 17.15 44.97 0.77 -2.16 16 8 F -0.17 -2.89 17.28 44.97 0.78 -2.12 16 9 C -0.13 -2.15 9.59 22.32 0.21 -1.94 16 10 C 0.00 -0.07 9.74 22.74 0.22 0.15 16 11 C -0.16 -3.55 5.89 -20.00 -0.12 -3.67 16 12 C 0.51 13.10 7.83 70.33 0.55 13.65 16 13 O -0.50 -13.51 13.16 19.95 0.26 -13.25 16 14 O -0.35 -9.81 9.54 -53.54 -0.51 -10.32 16 15 C 0.08 2.14 5.85 71.98 0.42 2.56 16 16 C 0.05 1.68 6.33 71.98 0.46 2.13 16 17 O -0.41 -18.62 10.30 -145.57 -1.50 -20.12 16 18 C 0.21 11.13 5.69 71.23 0.41 11.54 16 19 C -0.55 -31.62 9.43 25.60 0.24 -31.38 16 20 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 21 C 0.01 0.50 5.46 84.65 0.46 0.97 16 22 N -0.93 -54.18 13.29 21.44 0.28 -53.89 16 23 Si 0.98 43.02 29.54 68.60 2.03 45.05 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 27 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 1.96 5.85 -2.39 -0.01 1.94 16 30 H 0.19 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.18 3.15 7.72 -2.91 -0.02 3.13 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 38 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -66.79 352.01 6.62 -60.17 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: 1.11 Total: 2.87 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 4.28 Total: 8.44 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -1.36 Total: -65.86 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -1.75 Total: -43.69 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 2.31 Total: -6.97 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -66.79 6.62 -60.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815185801.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.897 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds