Wall clock time and date at job start Tue Mar 31 2020 18:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47382 * 2 1 4 4 N 1.46505 * 109.47136 * 119.99783 * 2 1 3 5 5 C 1.34776 * 120.00189 * 274.99975 * 4 2 1 6 6 O 1.21601 * 119.99888 * 359.97438 * 5 4 2 7 7 C 1.47531 * 120.00051 * 179.97438 * 5 4 2 8 8 C 1.39662 * 120.19740 * 359.97438 * 7 5 4 9 9 C 1.37830 * 119.91821 * 180.02562 * 8 7 5 10 10 C 1.38569 * 120.32508 * 359.97438 * 9 8 7 11 11 C 1.38026 * 120.40044 * 359.97438 * 10 9 8 12 12 C 1.38835 * 120.07367 * 0.02562 * 11 10 9 13 13 O 1.35522 * 120.16160 * 180.02562 * 12 11 10 14 14 C 1.34817 * 116.99686 * 354.38089 * 13 12 11 15 15 H 1.07992 * 120.00189 * 5.07359 * 14 13 12 16 16 C 1.38699 * 119.99657 * 185.06309 * 14 13 12 17 17 N 1.31519 * 119.99979 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00217 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47333 * 90.00036 * 18 16 14 20 20 H 1.48498 * 109.47093 * 210.00442 * 18 16 14 21 21 H 1.48497 * 109.46657 * 329.99756 * 18 16 14 22 22 C 1.52998 * 109.46970 * 239.99613 * 2 1 3 23 23 H 1.08994 * 109.47417 * 295.08079 * 22 2 1 24 24 O 1.42902 * 109.47060 * 55.08046 * 22 2 1 25 25 C 1.53003 * 109.46959 * 175.08196 * 22 2 1 26 26 F 1.39899 * 109.47214 * 65.17416 * 25 22 2 27 27 F 1.39900 * 109.46946 * 185.17334 * 25 22 2 28 28 F 1.39897 * 109.47195 * 305.16975 * 25 22 2 29 29 H 1.08992 * 109.47181 * 64.93785 * 1 2 3 30 30 H 1.08997 * 109.47578 * 184.94672 * 1 2 3 31 31 H 1.09009 * 109.46713 * 304.94361 * 1 2 3 32 32 H 0.97004 * 119.99778 * 94.99816 * 4 2 1 33 33 H 1.07995 * 120.04465 * 359.97438 * 8 7 5 34 34 H 1.08001 * 119.83775 * 180.02562 * 9 8 7 35 35 H 1.08002 * 119.80106 * 180.27528 * 10 9 8 36 36 H 1.08003 * 119.96285 * 180.02562 * 11 10 9 37 37 H 0.97006 * 120.00124 * 179.97438 * 17 16 14 38 38 H 0.96703 * 113.99786 * 60.00438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8583 1.1617 2.4117 7 6 2.6383 -0.7138 3.5619 8 6 2.9706 -2.0691 3.5042 9 6 3.4285 -2.7134 4.6333 10 6 3.5617 -2.0229 5.8273 11 6 3.2381 -0.6830 5.8991 12 6 2.7754 -0.0176 4.7719 13 8 2.4576 1.2980 4.8403 14 6 2.5016 1.8758 6.0577 15 1 2.8592 1.3154 6.9087 16 6 2.0878 3.1900 6.2169 17 7 1.6521 3.8723 5.1804 18 14 2.1494 3.9909 7.9034 19 1 3.4691 4.6447 8.0930 20 1 1.0732 5.0087 8.0076 21 1 1.9548 2.9557 8.9502 22 6 2.0399 -0.7213 -1.2492 23 1 1.7504 -1.7712 -1.2062 24 8 1.4716 -0.1178 -2.4131 25 6 3.5649 -0.6151 -1.3126 26 9 4.1259 -1.3080 -0.2344 27 9 4.0216 -1.1710 -2.5124 28 9 3.9417 0.7307 -1.2489 29 1 -0.3633 0.4353 -0.9308 30 1 -0.3634 -1.0238 0.0886 31 1 -0.3633 0.5887 0.8425 32 1 2.2490 -1.6318 1.1527 33 1 2.8682 -2.6119 2.5761 34 1 3.6855 -3.7613 4.5871 35 1 3.9255 -2.5350 6.7058 36 1 3.3451 -0.1516 6.8333 37 1 1.3623 4.7914 5.2918 38 1 1.6884 0.8190 -2.5161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819565011.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:48 Heat of formation + Delta-G solvation = -233.021381 kcal Electronic energy + Delta-G solvation = -29642.930398 eV Core-core repulsion = 24843.700991 eV Total energy + Delta-G solvation = -4799.229407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.25011 -47.75837 -47.72782 -39.82449 -38.76299 -37.59774 -36.36408 -34.66732 -32.36741 -31.46763 -29.66954 -28.96048 -28.85605 -25.42515 -24.21536 -23.19945 -21.93002 -21.15720 -20.07312 -18.83330 -18.68994 -18.51123 -18.06119 -17.77795 -16.47658 -16.34379 -15.62561 -14.78233 -14.65189 -14.58630 -14.51579 -14.37058 -14.23683 -14.15752 -14.11427 -13.86893 -13.85798 -13.78398 -13.57695 -13.48692 -12.86416 -12.59656 -12.48820 -12.25151 -11.91557 -11.73724 -11.41602 -11.26552 -11.14143 -10.92065 -10.83525 -10.65313 -10.47655 -9.61302 -8.94679 -8.90121 -8.77801 -8.30507 -7.33835 -6.47092 -4.06866 1.67878 2.29879 2.44331 3.10465 3.11389 3.15336 3.16128 3.49057 3.53116 3.66430 3.83007 3.91573 4.14038 4.41890 4.60787 4.72182 5.04107 5.14080 5.20066 5.26702 5.43594 5.49302 5.68545 5.74407 5.90701 6.06650 6.09472 6.26676 6.53623 6.64397 6.72547 6.84477 6.88557 7.03759 7.20841 7.26745 7.66854 7.86779 7.98012 8.92283 8.98723 9.64427 10.66669 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.003796 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.107114 B = 7373.448440 C = 8443.739927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.114 3.886 3 H 0.103 0.897 4 N -0.741 5.741 5 C 0.560 3.440 6 O -0.496 6.496 7 C -0.228 4.228 8 C -0.036 4.036 9 C -0.230 4.230 10 C -0.050 4.050 11 C -0.237 4.237 12 C 0.190 3.810 13 O -0.124 6.124 14 C -0.404 4.404 15 H 0.094 0.906 16 C 0.045 3.955 17 N -0.833 5.833 18 Si 0.941 3.059 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.266 1.266 22 C 0.068 3.932 23 H 0.144 0.856 24 O -0.523 6.523 25 C 0.419 3.581 26 F -0.172 7.172 27 F -0.180 7.180 28 F -0.179 7.179 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.395 0.605 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.271 0.729 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 -10.865 -10.888 15.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.008 3.992 3 H 0.121 0.879 4 N -0.399 5.399 5 C 0.351 3.649 6 O -0.369 6.369 7 C -0.233 4.233 8 C -0.055 4.055 9 C -0.249 4.249 10 C -0.068 4.068 11 C -0.257 4.257 12 C 0.130 3.870 13 O -0.022 6.022 14 C -0.479 4.479 15 H 0.111 0.889 16 C -0.163 4.163 17 N -0.464 5.464 18 Si 0.765 3.235 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.190 1.190 22 C 0.006 3.994 23 H 0.161 0.839 24 O -0.328 6.328 25 C 0.364 3.636 26 F -0.153 7.153 27 F -0.162 7.162 28 F -0.160 7.160 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.230 0.770 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.081 0.919 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.159 -10.074 -11.175 15.047 hybrid contribution 0.819 0.319 0.959 1.301 sum 0.978 -9.756 -10.217 14.160 Atomic orbital electron populations 1.22082 0.93038 1.02838 1.03415 1.21455 0.96456 0.98392 0.82908 0.87877 1.45932 1.70998 1.13799 1.09201 1.18213 0.77728 0.86715 0.82289 1.90957 1.47474 1.14619 1.83863 1.18754 1.17557 0.94178 0.92763 1.20749 0.95092 0.92223 0.97424 1.20463 1.11295 0.99526 0.93640 1.20905 0.95336 0.93671 0.96919 1.21160 1.09491 0.95504 0.99506 1.19265 0.90708 0.85091 0.91944 1.84166 1.70676 1.15673 1.31647 1.21498 1.45378 0.96540 0.84524 0.88859 1.25381 0.95754 0.95623 0.99514 1.70124 1.36567 1.10062 1.29636 0.85726 0.78478 0.79177 0.80131 1.19739 1.20120 1.19049 1.23461 0.85007 1.02443 0.88531 0.83880 1.86693 1.74245 1.30235 1.41655 1.21611 0.93800 0.74281 0.73925 1.93213 1.87299 1.79248 1.55557 1.93202 1.90993 1.85344 1.46612 1.93213 1.93079 1.33733 1.95976 0.91001 0.92200 0.90684 0.76984 0.87101 0.87237 0.87159 0.85057 0.91855 0.76035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.37 37.16 0.35 -1.51 16 2 C 0.11 1.45 2.23 -67.93 -0.15 1.30 16 3 H 0.10 1.55 6.96 -51.93 -0.36 1.19 16 4 N -0.74 -11.05 3.93 -54.85 -0.22 -11.27 16 5 C 0.56 11.76 7.73 -12.47 -0.10 11.66 16 6 O -0.50 -12.95 14.83 -16.58 -0.25 -13.19 16 7 C -0.23 -4.83 5.89 -104.81 -0.62 -5.45 16 8 C -0.04 -0.60 9.53 -39.20 -0.37 -0.98 16 9 C -0.23 -3.71 10.02 -39.61 -0.40 -4.11 16 10 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16 11 C -0.24 -5.03 9.16 -39.44 -0.36 -5.39 16 12 C 0.19 4.64 6.66 -38.60 -0.26 4.38 16 13 O -0.12 -3.59 7.84 -21.07 -0.17 -3.76 16 14 C -0.40 -11.29 9.49 30.90 0.29 -11.00 16 15 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 16 C 0.05 1.24 5.49 -17.52 -0.10 1.15 16 17 N -0.83 -24.78 13.67 55.48 0.76 -24.02 16 18 Si 0.94 20.32 29.55 -169.99 -5.02 15.30 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 C 0.07 0.65 2.70 -26.73 -0.07 0.58 16 23 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 24 O -0.52 -4.55 12.24 -35.23 -0.43 -4.99 16 25 C 0.42 4.82 2.86 37.16 0.11 4.93 16 26 F -0.17 -2.19 15.40 2.25 0.03 -2.15 16 27 F -0.18 -2.07 17.18 2.25 0.04 -2.03 16 28 F -0.18 -2.36 16.29 2.25 0.04 -2.33 16 29 H 0.07 0.72 7.40 -51.93 -0.38 0.34 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 32 H 0.39 4.76 5.87 -40.82 -0.24 4.52 16 33 H 0.11 1.43 6.40 -52.49 -0.34 1.09 16 34 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.13 2.75 5.64 -52.48 -0.30 2.45 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.39 2.39 8.84 45.56 0.40 2.79 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -34.72 338.58 -4.92 -39.64 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -2.74 Total: 9.39 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -2.07 Total: -5.69 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.54 Total: -35.29 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.84 Total: -21.94 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.11 Total: -6.51 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.72 -4.92 -39.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819565011.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.380 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds