Wall clock time and date at job start Tue Mar 31 2020 18:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47382 * 2 1 4 4 N 1.46505 * 109.47136 * 119.99783 * 2 1 3 5 5 C 1.34776 * 120.00189 * 274.99975 * 4 2 1 6 6 O 1.21601 * 119.99888 * 359.97438 * 5 4 2 7 7 C 1.47531 * 120.00051 * 179.97438 * 5 4 2 8 8 C 1.39662 * 120.19740 * 359.97438 * 7 5 4 9 9 C 1.37830 * 119.91821 * 180.02562 * 8 7 5 10 10 C 1.38569 * 120.32508 * 359.97438 * 9 8 7 11 11 C 1.38026 * 120.40044 * 359.97438 * 10 9 8 12 12 C 1.38835 * 120.07367 * 0.02562 * 11 10 9 13 13 O 1.35522 * 120.16160 * 180.02562 * 12 11 10 14 14 C 1.34817 * 116.99686 * 354.38089 * 13 12 11 15 15 H 1.07992 * 120.00189 * 5.07359 * 14 13 12 16 16 C 1.38699 * 119.99657 * 185.06309 * 14 13 12 17 17 N 1.31519 * 119.99979 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00217 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47333 * 90.00036 * 18 16 14 20 20 H 1.48498 * 109.47093 * 210.00442 * 18 16 14 21 21 H 1.48497 * 109.46657 * 329.99756 * 18 16 14 22 22 C 1.52998 * 109.46970 * 239.99613 * 2 1 3 23 23 H 1.08994 * 109.47417 * 295.08079 * 22 2 1 24 24 O 1.42902 * 109.47060 * 55.08046 * 22 2 1 25 25 C 1.53003 * 109.46959 * 175.08196 * 22 2 1 26 26 F 1.39899 * 109.47214 * 65.17416 * 25 22 2 27 27 F 1.39900 * 109.46946 * 185.17334 * 25 22 2 28 28 F 1.39897 * 109.47195 * 305.16975 * 25 22 2 29 29 H 1.08992 * 109.47181 * 64.93785 * 1 2 3 30 30 H 1.08997 * 109.47578 * 184.94672 * 1 2 3 31 31 H 1.09009 * 109.46713 * 304.94361 * 1 2 3 32 32 H 0.97004 * 119.99778 * 94.99816 * 4 2 1 33 33 H 1.07995 * 120.04465 * 359.97438 * 8 7 5 34 34 H 1.08001 * 119.83775 * 180.02562 * 9 8 7 35 35 H 1.08002 * 119.80106 * 180.27528 * 10 9 8 36 36 H 1.08003 * 119.96285 * 180.02562 * 11 10 9 37 37 H 0.97006 * 120.00124 * 179.97438 * 17 16 14 38 38 H 0.96703 * 113.99786 * 60.00438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8583 1.1617 2.4117 7 6 2.6383 -0.7138 3.5619 8 6 2.9706 -2.0691 3.5042 9 6 3.4285 -2.7134 4.6333 10 6 3.5617 -2.0229 5.8273 11 6 3.2381 -0.6830 5.8991 12 6 2.7754 -0.0176 4.7719 13 8 2.4576 1.2980 4.8403 14 6 2.5016 1.8758 6.0577 15 1 2.8592 1.3154 6.9087 16 6 2.0878 3.1900 6.2169 17 7 1.6521 3.8723 5.1804 18 14 2.1494 3.9909 7.9034 19 1 3.4691 4.6447 8.0930 20 1 1.0732 5.0087 8.0076 21 1 1.9548 2.9557 8.9502 22 6 2.0399 -0.7213 -1.2492 23 1 1.7504 -1.7712 -1.2062 24 8 1.4716 -0.1178 -2.4131 25 6 3.5649 -0.6151 -1.3126 26 9 4.1259 -1.3080 -0.2344 27 9 4.0216 -1.1710 -2.5124 28 9 3.9417 0.7307 -1.2489 29 1 -0.3633 0.4353 -0.9308 30 1 -0.3634 -1.0238 0.0886 31 1 -0.3633 0.5887 0.8425 32 1 2.2490 -1.6318 1.1527 33 1 2.8682 -2.6119 2.5761 34 1 3.6855 -3.7613 4.5871 35 1 3.9255 -2.5350 6.7058 36 1 3.3451 -0.1516 6.8333 37 1 1.3623 4.7914 5.2918 38 1 1.6884 0.8190 -2.5161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819565011.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:47 Heat of formation + Delta-G solvation = -259.373457 kcal Electronic energy + Delta-G solvation = -29644.073110 eV Core-core repulsion = 24843.700991 eV Total energy + Delta-G solvation = -4800.372119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.21089 -48.74725 -48.67852 -41.37847 -40.16977 -38.81368 -38.01170 -35.95499 -34.32116 -32.87953 -30.98037 -30.55338 -29.83167 -27.37534 -25.40118 -24.47467 -23.33272 -22.47972 -21.56970 -19.89826 -19.74450 -19.67288 -19.52797 -19.15730 -18.02748 -17.60144 -16.76169 -16.37030 -16.14457 -16.04650 -15.76414 -15.55654 -15.52823 -15.36791 -15.18607 -15.14205 -15.09455 -14.84621 -14.80446 -14.65110 -14.34381 -14.21252 -13.82622 -13.54636 -13.19822 -12.99233 -12.94844 -12.69115 -12.52870 -12.34876 -12.26201 -12.12544 -11.59932 -11.42874 -10.82988 -10.64404 -10.20791 -9.80313 -9.03332 -8.44464 -6.15071 0.12450 0.73510 1.32650 1.43822 1.51354 1.54038 1.98873 2.08735 2.16024 2.57067 2.62894 2.84686 2.88585 3.22650 3.30327 3.46866 3.49893 3.83337 3.95493 4.08736 4.14334 4.28153 4.36153 4.52876 4.61955 4.74184 4.88841 4.99104 5.08106 5.14517 5.23451 5.43770 5.48487 5.61148 5.70528 5.96168 6.17361 6.20122 6.59510 6.95156 7.43922 7.80290 8.75872 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.003796 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.107114 B = 7373.448440 C = 8443.739927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.110 3.890 3 H 0.073 0.927 4 N -0.715 5.715 5 C 0.556 3.444 6 O -0.560 6.560 7 C -0.245 4.245 8 C -0.029 4.029 9 C -0.201 4.201 10 C -0.040 4.040 11 C -0.258 4.258 12 C 0.149 3.851 13 O -0.187 6.187 14 C -0.427 4.427 15 H 0.106 0.894 16 C -0.021 4.021 17 N -0.904 5.904 18 Si 1.020 2.980 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.248 1.248 22 C 0.090 3.910 23 H 0.178 0.822 24 O -0.520 6.520 25 C 0.414 3.586 26 F -0.179 7.179 27 F -0.177 7.177 28 F -0.194 7.194 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.032 0.968 32 H 0.413 0.587 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.153 0.847 36 H 0.122 0.878 37 H 0.270 0.730 38 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -15.464 -11.293 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.004 3.996 3 H 0.091 0.909 4 N -0.374 5.374 5 C 0.346 3.654 6 O -0.438 6.438 7 C -0.250 4.250 8 C -0.047 4.047 9 C -0.219 4.219 10 C -0.058 4.058 11 C -0.277 4.277 12 C 0.094 3.906 13 O -0.090 6.090 14 C -0.503 4.503 15 H 0.123 0.877 16 C -0.220 4.220 17 N -0.540 5.540 18 Si 0.839 3.161 19 H -0.188 1.188 20 H -0.197 1.197 21 H -0.172 1.172 22 C 0.028 3.972 23 H 0.195 0.805 24 O -0.326 6.326 25 C 0.360 3.640 26 F -0.161 7.161 27 F -0.158 7.158 28 F -0.176 7.176 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.252 0.748 33 H 0.177 0.823 34 H 0.181 0.819 35 H 0.171 0.829 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.873 -14.791 -11.622 18.831 hybrid contribution 0.719 1.281 0.883 1.714 sum 1.592 -13.510 -10.739 17.332 Atomic orbital electron populations 1.22005 0.92122 1.03666 1.02826 1.21574 0.97132 0.97407 0.83447 0.90877 1.45622 1.69204 1.14343 1.08184 1.18418 0.77071 0.86068 0.83819 1.90944 1.50318 1.17516 1.85032 1.19257 1.17556 0.96176 0.91975 1.21300 0.93224 0.90108 1.00097 1.21175 1.06966 1.01684 0.92094 1.21431 0.93208 0.91847 0.99321 1.21300 1.10634 0.97472 0.98340 1.20085 0.91390 0.84703 0.94440 1.84171 1.74613 1.18099 1.32101 1.22017 1.45809 0.97316 0.85181 0.87685 1.26717 0.95140 0.96025 1.04111 1.70313 1.40441 1.10550 1.32677 0.84581 0.78719 0.78176 0.74621 1.18779 1.19715 1.17152 1.23348 0.83355 1.03629 0.86886 0.80459 1.86692 1.73894 1.31370 1.40676 1.21957 0.94763 0.73523 0.73764 1.93187 1.87586 1.79306 1.55988 1.93208 1.91066 1.85182 1.46344 1.93192 1.93332 1.35016 1.96035 0.88743 0.89879 0.94831 0.74838 0.82283 0.81877 0.82948 0.85985 0.92054 0.74712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.37 71.98 0.67 -2.77 16 2 C 0.11 2.73 2.23 44.99 0.10 2.83 16 3 H 0.07 2.32 6.96 -2.39 -0.02 2.30 16 4 N -0.72 -20.61 3.93 -445.69 -1.75 -22.36 16 5 C 0.56 24.13 7.73 86.69 0.67 24.80 16 6 O -0.56 -31.76 14.83 16.86 0.25 -31.51 16 7 C -0.24 -10.40 5.89 -19.99 -0.12 -10.51 16 8 C -0.03 -0.85 9.53 22.52 0.21 -0.64 16 9 C -0.20 -5.26 10.02 22.25 0.22 -5.04 16 10 C -0.04 -1.23 10.03 22.30 0.22 -1.01 16 11 C -0.26 -10.95 9.16 22.36 0.20 -10.75 16 12 C 0.15 7.60 6.66 22.91 0.15 7.75 16 13 O -0.19 -11.81 7.84 0.80 0.01 -11.80 16 14 C -0.43 -25.72 9.49 67.93 0.64 -25.07 16 15 H 0.11 5.68 5.21 -2.91 -0.02 5.67 16 16 C -0.02 -1.22 5.49 84.85 0.47 -0.75 16 17 N -0.90 -58.68 13.67 21.62 0.30 -58.39 16 18 Si 1.02 44.05 29.55 68.60 2.03 46.07 16 19 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 22 C 0.09 1.49 2.70 30.59 0.08 1.57 16 23 H 0.18 1.79 8.14 -2.39 -0.02 1.77 16 24 O -0.52 -7.60 12.24 -148.98 -1.82 -9.43 16 25 C 0.41 8.75 2.86 71.98 0.21 8.95 16 26 F -0.18 -4.12 15.40 44.97 0.69 -3.43 16 27 F -0.18 -3.61 17.18 44.97 0.77 -2.84 16 28 F -0.19 -5.12 16.29 44.97 0.73 -4.38 16 29 H 0.09 1.76 7.40 -2.39 -0.02 1.74 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.41 8.53 5.87 -92.71 -0.54 7.98 16 33 H 0.16 3.08 6.40 -2.91 -0.02 3.06 16 34 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 37 H 0.27 16.08 8.31 -92.70 -0.77 15.31 16 38 H 0.40 4.20 8.84 -74.06 -0.65 3.55 16 Total: -1.00 -88.04 338.58 4.91 -83.13 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -0.04 Total: 25.56 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 3.74 Total: -10.62 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -1.46 Total: -80.75 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -1.57 Total: -52.74 kcal Atomic # 9 Polarization: -12.85 SS G_CDS: 2.20 Total: -10.66 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -88.04 4.91 -83.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819565011.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.246 kcal (2) G-P(sol) polarization free energy of solvation -88.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds