Wall clock time and date at job start Tue Mar 31 2020 17:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.47202 * 109.46670 * 2 1 4 4 N 2.60805 * 109.46998 * 0.02562 * 2 1 3 5 5 C 1.52995 * 109.46991 * 240.00704 * 2 1 3 6 6 C 1.50699 * 109.47767 * 59.99777 * 5 2 1 7 7 O 1.20821 * 119.99655 * 359.97438 * 6 5 2 8 8 O 1.34228 * 119.99977 * 180.02562 * 6 5 2 9 9 C 1.50699 * 109.47378 * 120.00239 * 2 1 3 10 10 O 1.20825 * 119.99855 * 119.99865 * 9 2 1 11 11 O 1.34224 * 119.99749 * 300.00202 * 9 2 1 12 12 C 1.45207 * 117.00142 * 179.97438 * 11 9 2 13 13 C 1.50695 * 109.47244 * 180.02562 * 12 11 9 14 14 C 1.38309 * 119.92856 * 269.72190 * 13 12 11 15 15 C 1.38094 * 120.06757 * 179.72891 * 14 13 12 16 16 C 1.38880 * 119.92993 * 0.56677 * 15 14 13 17 17 O 1.35757 * 120.06799 * 179.68216 * 16 15 14 18 18 C 1.34829 * 116.99807 * 174.48959 * 17 16 15 19 19 H 1.07995 * 120.00304 * 5.05828 * 18 17 16 20 20 C 1.38651 * 119.99628 * 185.05710 * 18 17 16 21 21 N 1.31565 * 119.99875 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00432 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47217 * 89.99738 * 22 20 18 24 24 H 1.48499 * 109.47111 * 209.99783 * 22 20 18 25 25 H 1.48500 * 109.46977 * 329.99679 * 22 20 18 26 26 C 1.38872 * 119.86598 * 359.71174 * 16 15 14 27 27 C 1.38106 * 119.92543 * 359.97438 * 26 16 15 28 28 H 1.08997 * 109.46547 * 299.99915 * 1 2 3 29 29 H 1.08998 * 109.46896 * 59.99489 * 1 2 3 30 30 H 1.08998 * 109.46914 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47392 * 180.02562 * 5 2 1 32 32 H 1.09002 * 109.46800 * 299.99172 * 5 2 1 33 33 H 0.96701 * 116.99799 * 179.97438 * 8 6 5 34 34 H 1.08997 * 109.46605 * 300.00070 * 12 11 9 35 35 H 1.08999 * 109.46829 * 59.99378 * 12 11 9 36 36 H 1.08003 * 119.96452 * 359.97438 * 14 13 12 37 37 H 1.08006 * 120.03367 * 180.27538 * 15 14 13 38 38 H 0.96994 * 120.00140 * 180.02562 * 21 20 18 39 39 H 1.07999 * 120.04209 * 179.97438 * 26 16 15 40 40 H 1.08003 * 119.96376 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0206 1.3879 0.0000 4 7 2.3994 2.4589 0.0011 5 6 2.0400 -0.7211 -1.2493 6 6 1.5377 -0.0107 -2.4797 7 8 0.8427 0.9714 -2.3688 8 8 1.8616 -0.4695 -3.6989 9 6 2.0325 -0.7104 1.2304 10 8 2.7271 -1.6928 1.1194 11 8 1.7082 -0.2519 2.4495 12 6 2.2269 -0.9864 3.5896 13 6 1.7620 -0.3300 4.8639 14 6 2.5306 0.6586 5.4511 15 6 2.1046 1.2661 6.6158 16 6 0.9087 0.8750 7.2038 17 8 0.4904 1.4658 8.3523 18 6 -0.7310 1.1216 8.8080 19 1 -1.2943 0.3463 8.3102 20 6 -1.2636 1.7630 9.9158 21 7 -2.4552 1.4268 10.3609 22 14 -0.2896 3.1045 10.7766 23 1 -0.6144 4.4198 10.1685 24 1 -0.6429 3.1251 12.2187 25 1 1.1631 2.8352 10.6266 26 6 0.1420 -0.1219 6.6150 27 6 0.5704 -0.7210 5.4467 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 -0.7215 -1.2491 32 1 1.6768 -1.7488 -1.2493 33 1 1.5156 0.0193 -4.4581 34 1 1.8627 -2.0132 3.5564 35 1 3.3164 -0.9862 3.5568 36 1 3.4630 0.9586 4.9960 37 1 2.7030 2.0411 7.0714 38 1 -2.8280 1.8758 11.1356 39 1 -0.7882 -0.4285 7.0701 40 1 -0.0256 -1.4961 4.9880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819875511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:43 Heat of formation + Delta-G solvation = -142.128355 kcal Electronic energy + Delta-G solvation = -27094.254661 eV Core-core repulsion = 22840.823412 eV Total energy + Delta-G solvation = -4253.431249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57242 -40.56677 -39.32348 -37.86638 -37.17286 -36.49095 -36.35157 -34.71469 -32.55415 -30.92401 -30.38564 -29.25748 -26.67010 -25.66741 -24.61627 -22.43261 -22.22839 -21.85406 -20.65300 -19.34983 -18.59862 -18.03932 -17.57006 -17.20433 -16.95365 -16.50156 -16.37931 -15.88305 -14.99073 -14.91305 -14.64513 -14.20232 -14.01664 -13.98185 -13.89845 -13.52424 -13.43226 -13.21425 -12.96997 -12.83006 -12.69426 -12.65282 -12.34495 -12.26791 -12.16859 -11.91561 -11.86804 -11.55591 -11.15920 -11.01324 -10.93393 -10.82974 -10.68037 -10.62852 -10.23902 -9.50728 -8.97724 -8.40734 -7.53717 -6.52324 -4.19037 1.54519 1.60178 1.65518 2.01203 2.14407 2.29197 2.49764 2.90569 3.16366 3.20574 3.29308 3.34077 3.72627 4.14551 4.15310 4.22615 4.54361 4.69368 4.71022 4.74026 4.92594 4.98872 5.00368 5.05232 5.17598 5.32147 5.40265 5.50046 5.61383 5.71791 5.99420 6.02530 6.15356 6.17987 6.40625 6.63727 6.86887 7.06060 7.12863 7.14171 7.30438 7.34359 7.46079 7.67969 7.91472 8.81970 9.41990 10.54571 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.023143 B = 0.002145 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.582711 B =13049.191534 C =13255.589903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.066 3.934 3 C 0.211 3.789 4 N -0.387 5.387 5 C -0.099 4.099 6 C 0.481 3.519 7 O -0.502 6.502 8 O -0.510 6.510 9 C 0.478 3.522 10 O -0.493 6.493 11 O -0.338 6.338 12 C 0.128 3.872 13 C -0.201 4.201 14 C -0.049 4.049 15 C -0.196 4.196 16 C 0.171 3.829 17 O -0.210 6.210 18 C -0.392 4.392 19 H 0.109 0.891 20 C 0.065 3.935 21 N -0.873 5.873 22 Si 0.906 3.094 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.226 4.226 27 C -0.044 4.044 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.140 0.860 33 H 0.416 0.584 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.281 0.719 39 H 0.137 0.863 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.547 -7.450 -23.795 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.061 3.939 3 C -0.108 4.108 4 N -0.062 5.062 5 C -0.137 4.137 6 C 0.323 3.677 7 O -0.389 6.389 8 O -0.323 6.323 9 C 0.318 3.682 10 O -0.380 6.380 11 O -0.253 6.253 12 C 0.056 3.944 13 C -0.202 4.202 14 C -0.067 4.067 15 C -0.215 4.215 16 C 0.117 3.883 17 O -0.114 6.114 18 C -0.467 4.467 19 H 0.126 0.874 20 C -0.139 4.139 21 N -0.510 5.510 22 Si 0.731 3.269 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.183 1.183 26 C -0.245 4.245 27 C -0.062 4.062 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.102 0.898 31 H 0.145 0.855 32 H 0.158 0.842 33 H 0.275 0.725 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.092 0.908 39 H 0.154 0.846 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.214 -5.864 -23.046 25.159 hybrid contribution -0.182 0.327 0.033 0.376 sum 8.032 -5.537 -23.014 24.996 Atomic orbital electron populations 1.22259 0.87507 1.05013 1.06988 1.17687 1.00085 0.84434 0.91666 1.27818 0.94419 0.93898 0.94680 1.81215 1.07624 1.10876 1.06467 1.21245 1.05136 1.01330 0.85987 1.23015 0.77247 0.82439 0.84966 1.90750 1.35443 1.25824 1.86926 1.84496 1.72197 1.58938 1.16641 1.22494 0.77725 0.82850 0.85130 1.90711 1.34522 1.25421 1.87349 1.86674 1.68974 1.55591 1.14085 1.21873 0.98341 0.94217 0.79978 1.18877 0.99371 1.04917 0.96987 1.20521 0.98161 0.93810 0.94223 1.20198 0.97581 1.05094 0.98618 1.19193 0.92666 0.90965 0.85460 1.83578 1.34636 1.60073 1.33102 1.20801 0.90393 1.21941 1.13558 0.87391 1.24499 0.95435 0.97961 0.96036 1.69641 1.15109 1.41512 1.24746 0.86172 0.81218 0.81240 0.78261 1.19745 1.20637 1.18297 1.21263 1.03248 1.01057 0.98899 1.20670 0.93795 0.97439 0.94312 0.89341 0.87837 0.89822 0.85507 0.84218 0.72478 0.90414 0.90700 0.86741 0.86178 0.90849 0.84574 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.07 37.16 0.30 -0.89 16 2 C 0.07 0.57 0.66 -158.45 -0.10 0.47 16 3 C 0.21 2.51 11.97 -20.76 -0.25 2.26 16 4 N -0.39 -5.62 18.54 42.15 0.78 -4.84 16 5 C -0.10 -0.57 4.15 -27.89 -0.12 -0.69 16 6 C 0.48 3.14 7.75 36.01 0.28 3.42 16 7 O -0.50 -4.79 13.25 -18.75 -0.25 -5.03 16 8 O -0.51 -2.19 13.42 -39.25 -0.53 -2.72 16 9 C 0.48 5.04 6.52 36.01 0.23 5.28 16 10 O -0.49 -5.57 15.73 -18.75 -0.29 -5.87 16 11 O -0.34 -4.28 10.01 -39.24 -0.39 -4.67 16 12 C 0.13 1.62 5.59 36.00 0.20 1.82 16 13 C -0.20 -3.14 5.52 -104.58 -0.58 -3.72 16 14 C -0.05 -0.80 9.69 -39.61 -0.38 -1.18 16 15 C -0.20 -3.73 9.99 -39.40 -0.39 -4.12 16 16 C 0.17 3.78 6.65 -39.11 -0.26 3.52 16 17 O -0.21 -5.36 8.59 0.03 0.00 -5.36 16 18 C -0.39 -10.68 9.95 30.88 0.31 -10.37 16 19 H 0.11 2.98 5.44 -52.49 -0.29 2.70 16 20 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 21 N -0.87 -24.53 13.96 55.48 0.77 -23.76 16 22 Si 0.91 21.14 28.62 -169.99 -4.86 16.27 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 26 C -0.23 -4.59 9.17 -39.40 -0.36 -4.95 16 27 C -0.04 -0.74 9.69 -39.61 -0.38 -1.12 16 28 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 29 H 0.10 0.82 5.52 -51.93 -0.29 0.53 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.13 0.64 8.10 -51.93 -0.42 0.22 16 32 H 0.14 0.48 8.10 -51.93 -0.42 0.06 16 33 H 0.42 0.21 9.10 45.56 0.41 0.62 16 34 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 35 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 36 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 37 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 38 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.14 2.90 5.64 -52.49 -0.30 2.60 16 40 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -33.31 361.09 -4.31 -37.62 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -3.38 Total: 1.51 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -1.60 Total: -8.60 kcal Atomic # 7 Polarization: -30.15 SS G_CDS: 1.56 Total: -28.59 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -1.46 Total: -23.65 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.86 Total: 16.27 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.31 -4.31 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819875511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.510 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds