Wall clock time and date at job start Tue Mar 31 2020 19:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35744 * 116.99854 * 2 1 4 4 C 1.39373 * 119.72936 * 0.02676 * 3 2 1 5 5 C 1.36468 * 120.42988 * 179.97438 * 4 3 2 6 6 C 1.39962 * 119.79418 * 359.97438 * 5 4 3 7 7 C 1.46437 * 120.99264 * 180.02562 * 6 5 4 8 8 C 1.50705 * 120.90017 * 359.95828 * 7 6 5 9 9 N 1.46495 * 109.46845 * 84.98709 * 8 7 6 10 10 C 1.36938 * 120.00398 * 265.05672 * 9 8 7 11 11 H 1.08002 * 119.99607 * 322.97288 * 10 9 8 12 12 C 1.38803 * 120.00606 * 142.97221 * 10 9 8 13 13 N 1.31620 * 120.00016 * 340.54207 * 12 10 9 14 14 Si 1.86800 * 120.00541 * 160.54066 * 12 10 9 15 15 H 1.48503 * 109.46962 * 89.99706 * 14 12 10 16 16 H 1.48500 * 109.47410 * 210.00042 * 14 12 10 17 17 H 1.48501 * 109.46728 * 330.00007 * 14 12 10 18 18 C 1.46503 * 120.00078 * 85.06154 * 9 8 7 19 19 C 1.50693 * 109.47804 * 84.26895 * 18 9 8 20 20 O 1.20826 * 119.99604 * 359.97438 * 19 18 9 21 21 O 1.34228 * 120.00757 * 180.02562 * 19 18 9 22 22 C 1.35849 * 118.19611 * 180.23215 * 7 6 5 23 23 C 1.41003 * 119.82520 * 359.47052 * 22 7 6 24 24 O 1.21792 * 119.15758 * 180.27858 * 23 22 7 25 25 O 1.34223 * 121.68287 * 0.57266 * 23 22 7 26 26 C 1.35030 * 121.46632 * 359.70300 * 25 23 22 27 27 C 1.38512 * 119.72973 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47168 * 299.99588 * 1 2 3 29 29 H 1.09004 * 109.47041 * 59.99868 * 1 2 3 30 30 H 1.08998 * 109.47052 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.78403 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.09909 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47055 * 324.98841 * 8 7 6 34 34 H 1.09006 * 109.46846 * 204.98579 * 8 7 6 35 35 H 0.96996 * 120.00733 * 180.02562 * 13 12 10 36 36 H 1.09006 * 109.47017 * 204.26881 * 18 9 8 37 37 H 1.09001 * 109.46829 * 324.26628 * 18 9 8 38 38 H 0.96691 * 117.00346 * 180.02562 * 21 19 18 39 39 H 1.07998 * 120.08966 * 179.75489 * 22 7 6 40 40 H 1.08008 * 120.10705 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2807 2.3748 0.0006 5 6 1.8853 3.5982 0.0011 6 6 3.2823 3.6835 0.0016 7 6 3.9584 4.9825 0.0028 8 6 3.1686 6.2660 0.0025 9 7 2.8086 6.6181 1.3782 10 6 1.5901 6.2496 1.8828 11 1 0.7159 6.2656 1.2488 12 6 1.4785 5.8555 3.2090 13 7 2.5469 5.4667 3.8722 14 14 -0.1879 5.8770 4.0528 15 1 -0.8546 4.5634 3.8654 16 1 -0.0050 6.1368 5.5035 17 1 -1.0289 6.9480 3.4604 18 6 3.7522 7.3646 2.2141 19 6 3.6116 8.8391 1.9366 20 8 2.8062 9.2267 1.1236 21 8 4.3818 9.7219 2.5918 22 6 5.3168 4.9991 -0.0016 23 6 6.0330 3.7845 0.0042 24 8 7.2505 3.8136 0.0054 25 8 5.4072 2.5971 0.0027 26 6 4.0596 2.5105 0.0014 27 6 3.4288 1.2755 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2027 2.3091 0.0014 32 1 1.2876 4.4977 0.0011 33 1 2.2620 6.1346 -0.5881 34 1 3.7721 7.0638 -0.4308 35 1 2.4689 5.1909 4.7988 36 1 3.5384 7.1707 3.2652 37 1 4.7697 7.0473 1.9856 38 1 4.2551 10.6568 2.3804 39 1 5.8467 5.9401 -0.0049 40 1 4.0145 0.3680 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832486886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:46 Heat of formation + Delta-G solvation = -147.205285 kcal Electronic energy + Delta-G solvation = -29157.879632 eV Core-core repulsion = 24904.228230 eV Total energy + Delta-G solvation = -4253.651401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.87705 -40.91630 -40.88867 -39.14650 -38.40054 -37.32126 -36.64026 -35.35115 -33.15454 -32.04460 -30.40039 -29.82833 -28.28805 -28.10961 -25.09360 -24.91784 -24.19535 -22.81247 -21.76760 -20.54013 -19.31507 -18.89410 -18.74634 -18.50701 -17.81328 -17.80034 -17.30029 -16.83205 -16.73622 -16.66804 -16.31849 -15.98411 -15.53724 -15.41590 -15.03763 -14.91795 -14.65823 -14.36155 -14.25726 -13.77643 -13.47571 -13.16274 -13.13424 -12.93079 -12.85870 -12.68816 -12.47549 -12.33501 -12.21913 -12.13776 -12.02117 -11.94919 -11.40734 -11.30147 -10.84008 -10.63036 -9.82742 -8.99869 -8.84371 -8.01467 -5.58896 -0.64831 0.05966 0.62570 1.27125 1.44073 1.52697 1.52849 1.59234 1.84963 2.30252 2.38116 2.54319 2.74473 3.20857 3.28761 3.48624 3.55379 3.56951 3.81182 3.96384 4.23633 4.34752 4.42699 4.44887 4.47116 4.57414 4.68554 4.74958 4.78409 4.82828 4.87314 4.99605 5.13521 5.23077 5.23304 5.38739 5.44514 5.63193 5.83113 6.15918 6.26713 6.28699 6.43861 6.87972 7.30010 7.57403 8.10319 8.99096 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.009702 B = 0.005516 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.305071 B = 5074.722425 C = 7126.453600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.320 6.320 3 C 0.186 3.814 4 C -0.224 4.224 5 C 0.010 3.990 6 C -0.183 4.183 7 C 0.060 3.940 8 C 0.168 3.832 9 N -0.551 5.551 10 C -0.262 4.262 11 H 0.076 0.924 12 C -0.018 4.018 13 N -0.901 5.901 14 Si 0.951 3.049 15 H -0.273 1.273 16 H -0.296 1.296 17 H -0.274 1.274 18 C 0.149 3.851 19 C 0.453 3.547 20 O -0.544 6.544 21 O -0.524 6.524 22 C -0.301 4.301 23 C 0.513 3.487 24 O -0.524 6.524 25 O -0.286 6.286 26 C 0.163 3.837 27 C -0.193 4.193 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.166 0.834 32 H 0.153 0.847 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.258 0.742 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.413 0.587 39 H 0.162 0.838 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.895 -4.709 -6.862 10.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.233 6.233 3 C 0.139 3.861 4 C -0.243 4.243 5 C -0.008 4.008 6 C -0.185 4.185 7 C 0.055 3.945 8 C 0.043 3.957 9 N -0.268 5.268 10 C -0.391 4.391 11 H 0.093 0.907 12 C -0.218 4.218 13 N -0.542 5.542 14 Si 0.778 3.222 15 H -0.199 1.199 16 H -0.223 1.223 17 H -0.199 1.199 18 C 0.020 3.980 19 C 0.294 3.706 20 O -0.433 6.433 21 O -0.336 6.336 22 C -0.322 4.322 23 C 0.368 3.632 24 O -0.417 6.417 25 O -0.198 6.198 26 C 0.118 3.882 27 C -0.212 4.212 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.144 0.856 31 H 0.183 0.817 32 H 0.170 0.830 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.273 0.727 39 H 0.179 0.821 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.331 -5.410 -6.808 10.200 hybrid contribution -0.601 0.942 0.849 1.403 sum -5.932 -4.468 -5.959 9.521 Atomic orbital electron populations 1.23515 0.75469 1.06187 1.02894 1.86021 1.24192 1.25683 1.87364 1.18714 0.90692 0.85229 0.91456 1.21293 1.02085 0.91007 1.09878 1.21006 0.91768 0.99146 0.88927 1.19094 0.95350 0.91415 1.12593 1.22783 0.93676 0.96283 0.81729 1.20399 0.98127 0.89494 0.87697 1.43567 1.15908 1.56778 1.10536 1.19295 0.85375 1.39231 0.95241 0.90673 1.25833 0.99480 0.96952 0.99488 1.70015 1.29953 1.43380 1.10871 0.85545 0.80763 0.78472 0.77372 1.19885 1.22290 1.19921 1.20586 0.94668 0.81692 1.01021 1.25934 0.76299 0.91773 0.76560 1.90575 1.36496 1.81193 1.35077 1.84610 1.61395 1.22607 1.65007 1.22066 0.94685 0.97688 1.17749 1.19424 0.87328 0.82086 0.74387 1.90873 1.13642 1.86104 1.51087 1.83392 1.20954 1.37616 1.77808 1.18834 0.78533 0.94389 0.96450 1.19461 0.92419 0.95828 1.13507 0.91805 0.90575 0.85554 0.81657 0.82963 0.89251 0.90852 0.93235 0.86721 0.90033 0.72660 0.82077 0.82821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.80 113.37 1.11 1.29 16 2 O -0.32 -7.29 10.48 -90.68 -0.95 -8.24 16 3 C 0.19 5.04 6.69 22.61 0.15 5.19 16 4 C -0.22 -5.85 8.96 22.13 0.20 -5.65 16 5 C 0.01 0.30 9.01 22.27 0.20 0.50 16 6 C -0.18 -6.49 5.87 -20.12 -0.12 -6.61 16 7 C 0.06 2.18 5.65 -18.28 -0.10 2.08 16 8 C 0.17 5.92 5.35 85.64 0.46 6.38 16 9 N -0.55 -23.02 1.92 -710.69 -1.36 -24.38 16 10 C -0.26 -11.75 8.04 84.03 0.68 -11.08 16 11 H 0.08 3.26 7.60 -2.91 -0.02 3.24 16 12 C -0.02 -0.83 4.95 84.86 0.42 -0.41 16 13 N -0.90 -45.30 11.39 21.65 0.25 -45.06 16 14 Si 0.95 38.63 29.60 68.60 2.03 40.66 16 15 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 16 H -0.30 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 18 C 0.15 6.20 5.83 85.63 0.50 6.70 16 19 C 0.45 17.35 8.39 71.23 0.60 17.94 16 20 O -0.54 -23.18 17.15 21.97 0.38 -22.81 16 21 O -0.52 -16.10 13.42 -51.40 -0.69 -16.79 16 22 C -0.30 -11.15 9.60 22.39 0.21 -10.94 16 23 C 0.51 21.13 7.89 68.50 0.54 21.67 16 24 O -0.52 -23.88 17.91 18.98 0.34 -23.54 16 25 O -0.29 -11.31 9.82 14.61 0.14 -11.17 16 26 C 0.16 5.82 6.76 22.98 0.16 5.97 16 27 C -0.19 -5.94 9.94 22.44 0.22 -5.72 16 28 H 0.06 0.87 7.64 -2.39 -0.02 0.85 16 29 H 0.08 0.81 7.64 -2.39 -0.02 0.80 16 30 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.17 3.19 6.24 -2.91 -0.02 3.17 16 32 H 0.15 4.67 5.24 -2.91 -0.02 4.66 16 33 H 0.09 2.88 6.75 -2.39 -0.02 2.86 16 34 H 0.07 2.43 8.03 -2.38 -0.02 2.41 16 35 H 0.26 12.83 8.31 -92.71 -0.77 12.06 16 36 H 0.12 5.41 5.48 -2.38 -0.01 5.40 16 37 H 0.08 3.21 8.11 -2.39 -0.02 3.19 16 38 H 0.41 8.54 9.10 -74.06 -0.67 7.87 16 39 H 0.16 5.47 8.06 -2.91 -0.02 5.45 16 40 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -64.64 350.15 5.81 -58.83 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.45 Total: 25.18 kcal Atomic # 6 Polarization: 22.10 SS G_CDS: 5.22 Total: 27.32 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -1.11 Total: -69.43 kcal Atomic # 8 Polarization: -81.77 SS G_CDS: -0.78 Total: -82.55 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -64.64 5.81 -58.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832486886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.378 kcal (2) G-P(sol) polarization free energy of solvation -64.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds