Wall clock time and date at job start Tue Mar 31 2020 17:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00180 * 2 1 4 4 H 1.48497 * 109.46779 * 269.99949 * 3 2 1 5 5 H 1.48504 * 109.46997 * 29.99429 * 3 2 1 6 6 H 1.48496 * 109.47290 * 149.99636 * 3 2 1 7 7 C 1.37878 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99946 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00093 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46957 * 180.02562 * 9 7 2 11 11 S 1.81398 * 109.47017 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54530 * 68.37333 * 11 10 9 13 13 O 1.42097 * 110.54513 * 291.62277 * 11 10 9 14 14 N 1.65608 * 104.45188 * 179.97438 * 11 10 9 15 15 C 1.34774 * 119.99742 * 64.99950 * 14 11 10 16 16 O 1.21284 * 120.00066 * 0.02562 * 15 14 11 17 17 C 1.50696 * 120.00025 * 180.02562 * 15 14 11 18 18 H 1.09000 * 109.47319 * 59.99260 * 17 15 14 19 19 C 1.53002 * 109.46919 * 300.00029 * 17 15 14 20 20 C 1.52997 * 109.47092 * 299.99835 * 19 17 15 21 21 C 1.53006 * 109.47445 * 300.00075 * 20 19 17 22 22 C 1.53002 * 109.46711 * 59.99695 * 21 20 19 23 23 H 1.09002 * 109.47070 * 60.00376 * 22 21 20 24 24 C 1.50703 * 109.46966 * 180.02562 * 22 21 20 25 25 O 1.20824 * 120.00141 * 119.99957 * 24 22 21 26 26 O 1.34226 * 119.99900 * 300.00390 * 24 22 21 27 27 C 1.53000 * 109.47233 * 300.00001 * 22 21 20 28 28 H 0.97001 * 120.00207 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.46906 * 60.00607 * 9 7 2 30 30 H 1.08997 * 109.47321 * 300.00333 * 9 7 2 31 31 H 1.09002 * 109.47356 * 59.99942 * 10 9 7 32 32 H 1.09005 * 109.47026 * 299.99944 * 10 9 7 33 33 H 0.96997 * 119.99734 * 245.00463 * 14 11 10 34 34 H 1.09002 * 109.47067 * 179.97438 * 19 17 15 35 35 H 1.09000 * 109.47312 * 59.99955 * 19 17 15 36 36 H 1.09001 * 109.47375 * 180.02562 * 20 19 17 37 37 H 1.09002 * 109.47497 * 59.99850 * 20 19 17 38 38 H 1.09002 * 109.46589 * 300.00331 * 21 20 19 39 39 H 1.08996 * 109.47165 * 179.97438 * 21 20 19 40 40 H 0.96704 * 117.00221 * 179.97438 * 26 24 22 41 41 H 1.09001 * 109.47194 * 179.97438 * 27 22 21 42 42 H 1.08992 * 109.47399 * 300.00166 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 16 5.8355 -2.6365 0.0025 12 8 6.3332 -2.1466 1.2400 13 8 6.3352 -2.1458 -1.2339 14 7 6.2488 -4.2402 0.0029 15 6 5.9401 -5.0159 -1.0551 16 8 5.3601 -4.5394 -2.0077 17 6 6.3157 -6.4753 -1.0545 18 1 5.8346 -6.9740 -0.2131 19 6 7.8343 -6.6110 -0.9272 20 6 8.5097 -5.9111 -2.1082 21 6 8.0478 -6.5571 -3.4160 22 6 6.5291 -6.4214 -3.5433 23 1 6.2575 -5.3658 -3.5437 24 6 6.0741 -7.0583 -4.8311 25 8 5.2901 -7.9773 -4.8066 26 8 6.5398 -6.6046 -6.0054 27 6 5.8538 -7.1214 -2.3623 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6801 0.8911 30 1 3.8752 -0.6804 -0.8888 31 1 3.6585 -3.1502 -0.8892 32 1 3.6578 -3.1505 0.8908 33 1 6.7129 -4.6212 0.7647 34 1 8.1059 -7.6667 -0.9263 35 1 8.1634 -6.1508 0.0045 36 1 9.5916 -6.0082 -2.0178 37 1 8.2380 -4.8555 -2.1087 38 1 8.3195 -7.6128 -3.4155 39 1 8.5286 -6.0582 -4.2574 40 1 6.2194 -7.0450 -6.8045 41 1 4.7719 -7.0243 -2.4527 42 1 6.1254 -8.1770 -2.3618 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833760522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:16 Heat of formation + Delta-G solvation = -223.491668 kcal Electronic energy + Delta-G solvation = -27747.500508 eV Core-core repulsion = 23625.985032 eV Total energy + Delta-G solvation = -4121.515476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.39277 -40.16888 -37.61154 -36.83420 -36.26285 -35.80536 -34.75452 -33.98406 -31.77926 -31.51959 -31.28243 -26.05043 -24.86983 -24.60579 -22.24411 -21.43643 -21.17408 -20.21121 -19.47081 -18.23448 -17.87080 -17.33478 -17.14245 -16.93091 -16.11935 -15.86514 -15.36245 -15.24809 -15.08814 -14.80652 -14.34975 -14.20844 -13.82309 -13.68925 -13.10018 -12.90184 -12.81940 -12.70189 -12.54681 -12.38152 -11.96466 -11.91261 -11.79977 -11.73838 -11.59846 -11.35464 -11.29414 -11.26639 -11.11196 -10.90127 -10.61441 -10.46284 -10.44687 -10.18979 -9.99170 -9.66209 -9.37690 -8.67031 -6.17070 -4.18732 0.32437 1.91176 2.06887 2.55221 2.84749 3.26402 3.33401 3.36550 3.80378 3.96612 4.18560 4.23457 4.34996 4.41267 4.57452 4.65293 4.67400 4.75973 4.92284 5.04295 5.08524 5.14103 5.19043 5.36574 5.43317 5.47269 5.50016 5.53485 5.62422 5.75862 5.79962 5.91268 5.98686 6.22543 6.32938 6.49056 6.77162 6.90085 7.32866 7.52353 7.72842 8.35365 8.83863 9.41906 10.95261 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.003448 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.785987 B = 8119.506015 C = 9042.639044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.569 4.569 11 S 2.562 3.438 12 O -0.954 6.954 13 O -0.937 6.937 14 N -1.056 6.056 15 C 0.538 3.462 16 O -0.486 6.486 17 C -0.109 4.109 18 H 0.117 0.883 19 C -0.116 4.116 20 C -0.130 4.130 21 C -0.109 4.109 22 C -0.099 4.099 23 H 0.139 0.861 24 C 0.488 3.512 25 O -0.519 6.519 26 O -0.515 6.515 27 C -0.087 4.087 28 H 0.267 0.733 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.429 0.571 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.408 0.592 41 H 0.085 0.915 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.569 -17.603 -3.289 25.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.558 4.558 8 H 0.097 0.903 9 C -0.045 4.045 10 C -0.704 4.704 11 S 2.662 3.338 12 O -0.945 6.945 13 O -0.927 6.927 14 N -0.818 5.818 15 C 0.325 3.675 16 O -0.358 6.358 17 C -0.132 4.132 18 H 0.135 0.865 19 C -0.153 4.153 20 C -0.167 4.167 21 C -0.146 4.146 22 C -0.117 4.117 23 H 0.156 0.844 24 C 0.331 3.669 25 O -0.407 6.407 26 O -0.326 6.326 27 C -0.125 4.125 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.265 0.735 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.266 0.734 41 H 0.104 0.896 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 18.582 -16.503 -3.647 25.119 hybrid contribution -0.300 0.052 -0.085 0.316 sum 18.282 -16.452 -3.732 24.876 Atomic orbital electron populations 1.69876 1.06199 1.27286 1.49843 1.24971 0.94823 0.99133 0.94089 0.86926 0.80642 0.83697 0.79192 1.19596 1.20703 1.18657 1.20808 0.87577 0.95012 1.52441 0.90332 1.19427 1.00083 0.86985 0.97970 1.30184 1.18585 1.09946 1.11641 1.06765 0.80161 0.72321 0.74572 1.93601 1.79532 1.76348 1.44987 1.93603 1.78396 1.76207 1.44485 1.55378 1.66731 1.32699 1.26968 1.20680 0.76433 0.89683 0.80738 1.90839 1.37952 1.74761 1.32200 1.21541 0.98733 0.91574 1.01361 0.86481 1.21631 0.91815 1.02615 0.99281 1.21662 1.00828 1.00509 0.93704 1.21524 0.92518 1.01701 0.98897 1.21435 0.97373 1.04520 0.88405 0.84365 1.23504 0.77422 0.80342 0.85638 1.90705 1.33266 1.28821 1.87956 1.84556 1.68423 1.62449 1.17219 1.21284 1.01785 0.99262 0.90146 0.92330 0.94887 0.95137 0.84461 0.85419 0.73523 0.89759 0.90701 0.90467 0.91059 0.91319 0.90257 0.73380 0.89615 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.96 55.43 0.77 -26.35 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.01 -0.12 4.05 -27.88 -0.11 -0.24 16 10 C -0.57 -10.57 5.82 37.16 0.22 -10.35 16 11 S 2.56 42.04 5.11 -107.50 -0.55 41.49 16 12 O -0.95 -17.18 18.08 -57.54 -1.04 -18.22 16 13 O -0.94 -18.41 17.04 -64.79 -1.10 -19.51 16 14 N -1.06 -11.49 5.50 31.22 0.17 -11.32 16 15 C 0.54 6.15 5.38 -10.99 -0.06 6.09 16 16 O -0.49 -7.40 11.76 -11.57 -0.14 -7.54 16 17 C -0.11 -0.81 3.01 -91.77 -0.28 -1.09 16 18 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 19 C -0.12 -0.64 5.36 -26.73 -0.14 -0.78 16 20 C -0.13 -0.93 5.70 -26.73 -0.15 -1.09 16 21 C -0.11 -0.84 5.14 -26.73 -0.14 -0.98 16 22 C -0.10 -1.01 2.33 -91.77 -0.21 -1.22 16 23 H 0.14 1.75 5.51 -51.93 -0.29 1.46 16 24 C 0.49 5.44 7.63 36.01 0.27 5.72 16 25 O -0.52 -7.06 16.74 -18.75 -0.31 -7.38 16 26 O -0.52 -4.65 13.33 -39.25 -0.52 -5.18 16 27 C -0.09 -0.79 3.66 -26.73 -0.10 -0.88 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 29 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 30 H 0.03 0.72 7.57 -51.93 -0.39 0.33 16 31 H 0.14 2.53 7.19 -51.92 -0.37 2.16 16 32 H 0.13 2.06 8.14 -51.92 -0.42 1.63 16 33 H 0.43 2.88 8.21 -34.47 -0.28 2.59 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.30 7.56 -51.93 -0.39 -0.09 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.68 7.22 -51.93 -0.37 0.31 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 40 H 0.41 1.94 9.10 45.56 0.41 2.36 16 41 H 0.09 0.92 8.06 -51.93 -0.42 0.50 16 42 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -38.56 353.78 -8.21 -46.77 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.02 Total: 2.84 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -1.13 Total: -17.75 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.95 Total: -37.67 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -3.12 Total: -57.82 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: 42.04 SS G_CDS: -0.55 Total: 41.49 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -38.56 -8.21 -46.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.722 kcal (2) G-P(sol) polarization free energy of solvation -38.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds