Wall clock time and date at job start Tue Mar 31 2020 17:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00276 * 2 1 4 4 H 1.48500 * 109.47177 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47310 * 120.00056 * 3 2 1 6 6 H 1.48503 * 109.46858 * 239.99718 * 3 2 1 7 7 C 1.38709 * 119.99864 * 180.26957 * 2 1 3 8 8 H 1.07994 * 120.00115 * 179.72706 * 7 2 1 9 9 O 1.34808 * 119.99632 * 359.72780 * 7 2 1 10 10 C 1.35509 * 117.00000 * 174.93681 * 9 7 2 11 11 C 1.38841 * 120.16198 * 5.59757 * 10 9 7 12 12 C 1.38027 * 120.07375 * 179.97438 * 11 10 9 13 13 C 1.38589 * 120.41509 * 0.02562 * 12 11 10 14 14 C 1.37803 * 120.33238 * 0.02562 * 13 12 11 15 15 C 1.39732 * 119.91340 * 359.71809 * 14 13 12 16 16 C 1.47399 * 120.20254 * 180.27886 * 15 14 13 17 17 O 1.21507 * 119.99723 * 180.25611 * 16 15 14 18 18 O 1.34752 * 120.00048 * 0.25283 * 16 15 14 19 19 C 1.45199 * 117.00176 * 180.02562 * 18 16 15 20 20 H 1.09000 * 110.76573 * 29.29494 * 19 18 16 21 21 C 1.55078 * 110.86219 * 265.79107 * 19 18 16 22 22 C 1.54985 * 104.64895 * 263.87368 * 21 19 18 23 23 N 1.47103 * 106.47590 * 3.54455 * 22 21 19 24 24 C 1.33464 * 147.09314 * 144.69637 * 23 22 21 25 25 O 1.21511 * 123.33446 * 21.43028 * 24 23 22 26 26 O 1.34108 * 113.33880 * 201.41274 * 24 23 22 27 27 C 1.47407 * 109.51757 * 353.05559 * 26 24 23 28 28 C 1.48598 * 104.93433 * 330.77036 * 23 22 21 29 29 H 1.09004 * 112.90661 * 282.07719 * 28 23 22 30 30 H 0.97001 * 120.00373 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.95967 * 359.97376 * 11 10 9 32 32 H 1.07998 * 119.78940 * 179.97438 * 12 11 10 33 33 H 1.07996 * 119.83087 * 180.02562 * 13 12 11 34 34 H 1.07999 * 120.04029 * 179.97438 * 14 13 12 35 35 H 1.09000 * 110.34757 * 22.77984 * 21 19 18 36 36 H 1.08990 * 110.35330 * 145.07097 * 21 19 18 37 37 H 1.09000 * 110.02473 * 244.29294 * 22 21 19 38 38 H 1.09005 * 110.10488 * 122.83522 * 22 21 19 39 39 H 1.09003 * 111.05812 * 237.55019 * 27 26 24 40 40 H 1.08998 * 110.74189 * 114.20568 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6962 -1.2125 7 6 2.0086 -1.2013 -0.0057 8 1 3.0885 -1.2013 -0.0101 9 8 1.3345 -2.3687 -0.0056 10 6 2.0679 -3.5026 -0.1178 11 6 3.4549 -3.4400 -0.1095 12 6 4.2001 -4.5962 -0.2234 13 6 3.5730 -5.8258 -0.3472 14 6 2.1974 -5.9075 -0.3585 15 6 1.4294 -4.7463 -0.2387 16 6 -0.0424 -4.8269 -0.2439 17 8 -0.7066 -3.8143 -0.1441 18 8 -0.6512 -6.0235 -0.3592 19 6 -2.1032 -6.0272 -0.3575 20 1 -2.4925 -5.0953 -0.7675 21 6 -2.6532 -6.2742 1.0713 22 6 -2.9383 -7.7967 1.1238 23 7 -2.4856 -8.3505 -0.1617 24 6 -1.9275 -9.3783 -0.8046 25 8 -1.9085 -10.5106 -0.3641 26 8 -1.3900 -9.0378 -1.9851 27 6 -1.7286 -7.6370 -2.2948 28 6 -2.6502 -7.2407 -1.1360 29 1 -3.6844 -7.1035 -1.4521 30 1 -0.4851 -0.8400 0.0004 31 1 3.9511 -2.4855 -0.0138 32 1 5.2787 -4.5421 -0.2167 33 1 4.1653 -6.7246 -0.4353 34 1 1.7136 -6.8682 -0.4556 35 1 -1.9075 -5.9992 1.8172 36 1 -3.5723 -5.7094 1.2266 37 1 -4.0065 -7.9722 1.2512 38 1 -2.3842 -8.2536 1.9437 39 1 -2.2554 -7.5625 -3.2462 40 1 -0.8330 -7.0158 -2.3019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893611324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:31 Heat of formation + Delta-G solvation = -129.947952 kcal Electronic energy + Delta-G solvation = -28981.671570 eV Core-core repulsion = 24728.768502 eV Total energy + Delta-G solvation = -4252.903067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -41.97409 -40.12575 -39.03962 -37.60020 -36.93748 -36.65642 -35.48779 -32.50276 -31.52648 -30.93258 -30.39062 -29.09869 -26.57513 -25.16350 -23.97747 -23.50118 -21.99345 -21.44375 -20.95361 -20.18772 -18.58222 -18.18694 -17.35163 -17.27113 -16.98512 -16.46753 -15.83268 -15.58629 -15.22281 -15.13574 -14.82989 -14.36434 -14.18545 -14.09902 -13.82699 -13.78887 -13.62116 -13.30045 -13.08423 -12.94543 -12.45933 -12.25150 -11.64744 -11.57294 -11.47516 -11.31222 -11.02005 -10.94227 -10.83874 -10.74102 -10.70390 -10.47769 -10.39665 -9.95991 -9.53605 -9.23048 -8.96847 -8.52187 -7.57739 -6.97048 -4.24818 1.36681 2.13712 2.19083 2.53949 2.76266 3.12891 3.13935 3.19247 3.22732 3.35226 3.76967 3.94868 4.02314 4.22890 4.38691 4.56073 4.70880 4.76331 4.80293 4.85701 5.00538 5.13283 5.22938 5.27997 5.33020 5.40809 5.41477 5.54212 5.63643 5.73869 5.92060 5.96088 6.17804 6.34814 6.46639 6.66318 6.77102 6.95191 7.05575 7.28478 7.31090 7.45025 7.88084 8.20339 8.34723 8.69124 9.35608 10.47399 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.003454 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.581076 B = 8103.629407 C = 9217.171632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.017 3.983 3 Si 1.095 2.905 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.479 4.479 8 H 0.089 0.911 9 O -0.148 6.148 10 C 0.194 3.806 11 C -0.234 4.234 12 C -0.041 4.041 13 C -0.231 4.231 14 C -0.014 4.014 15 C -0.224 4.224 16 C 0.504 3.496 17 O -0.487 6.487 18 O -0.351 6.351 19 C 0.080 3.920 20 H 0.112 0.888 21 C -0.151 4.151 22 C 0.158 3.842 23 N -0.638 5.638 24 C 0.680 3.320 25 O -0.521 6.521 26 O -0.326 6.326 27 C 0.048 3.952 28 C 0.055 3.945 29 H 0.129 0.871 30 H 0.295 0.705 31 H 0.136 0.864 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 -9.769 -1.670 10.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.193 4.193 3 Si 0.918 3.082 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.554 4.554 8 H 0.107 0.893 9 O -0.047 6.047 10 C 0.135 3.865 11 C -0.253 4.253 12 C -0.059 4.059 13 C -0.250 4.250 14 C -0.033 4.033 15 C -0.227 4.227 16 C 0.351 3.649 17 O -0.374 6.374 18 O -0.270 6.270 19 C 0.023 3.977 20 H 0.130 0.870 21 C -0.189 4.189 22 C 0.039 3.961 23 N -0.387 5.387 24 C 0.436 3.564 25 O -0.406 6.406 26 O -0.236 6.236 27 C -0.026 4.026 28 C -0.051 4.051 29 H 0.146 0.854 30 H 0.106 0.894 31 H 0.153 0.847 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.142 0.858 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.090 -8.638 -1.446 9.666 hybrid contribution 0.273 -1.465 0.089 1.492 sum -3.817 -10.102 -1.356 10.884 Atomic orbital electron populations 1.70465 1.06711 1.33052 1.38359 1.26679 0.96773 1.01227 0.94596 0.83126 0.74610 0.73119 0.77318 1.19566 1.20484 1.20476 1.22478 0.93423 0.82256 1.57213 0.89340 1.83805 1.35188 1.11999 1.73684 1.19046 0.90015 0.86242 0.91180 1.21140 0.92930 0.99613 1.11653 1.21013 0.98977 0.92189 0.93757 1.20582 0.94114 0.97355 1.12958 1.20955 0.93675 0.96081 0.92553 1.17942 0.87970 0.92596 1.24150 1.21125 0.89148 0.80589 0.74014 1.90919 1.65877 1.35294 1.45303 1.86609 1.20446 1.34947 1.85042 1.23374 0.79458 0.98829 0.96029 0.86983 1.23393 1.03350 0.94795 0.97346 1.21945 0.99617 0.92153 0.82399 1.48953 1.65207 1.13829 1.10721 1.17507 0.76028 0.83699 0.79206 1.91029 1.62265 1.18808 1.68486 1.87660 1.69210 1.30845 1.35923 1.24337 1.01211 0.79010 0.98042 1.23784 1.00998 0.89264 0.91075 0.85358 0.89411 0.84653 0.86733 0.86773 0.85846 0.88905 0.88160 0.90179 0.89760 0.87045 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.77 13.69 55.48 0.76 -24.01 16 2 C 0.02 0.45 5.49 -17.52 -0.10 0.35 16 3 Si 1.10 22.32 29.92 -169.99 -5.09 17.23 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 6 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 7 C -0.48 -12.81 9.49 30.91 0.29 -12.52 16 8 H 0.09 2.18 5.21 -52.49 -0.27 1.90 16 9 O -0.15 -4.02 7.24 -21.01 -0.15 -4.17 16 10 C 0.19 4.52 6.66 -38.57 -0.26 4.26 16 11 C -0.23 -4.77 9.16 -39.44 -0.36 -5.13 16 12 C -0.04 -0.69 10.03 -39.53 -0.40 -1.08 16 13 C -0.23 -3.71 10.02 -39.61 -0.40 -4.11 16 14 C -0.01 -0.25 9.61 -39.18 -0.38 -0.62 16 15 C -0.22 -4.58 5.89 -104.83 -0.62 -5.20 16 16 C 0.50 9.92 7.89 34.46 0.27 10.20 16 17 O -0.49 -11.20 14.45 -26.59 -0.38 -11.59 16 18 O -0.35 -5.40 7.53 -40.63 -0.31 -5.70 16 19 C 0.08 0.94 3.15 -25.00 -0.08 0.86 16 20 H 0.11 1.37 7.22 -51.93 -0.38 0.99 16 21 C -0.15 -1.49 6.78 -24.58 -0.17 -1.66 16 22 C 0.16 1.47 7.63 -2.66 -0.02 1.45 16 23 N -0.64 -7.58 3.95 -168.25 -0.67 -8.25 16 24 C 0.68 10.22 9.10 53.47 0.49 10.70 16 25 O -0.52 -9.67 18.04 -19.08 -0.34 -10.01 16 26 O -0.33 -4.47 11.17 -38.67 -0.43 -4.90 16 27 C 0.05 0.48 7.78 37.30 0.29 0.77 16 28 C 0.05 0.52 3.98 -66.00 -0.26 0.26 16 29 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.29 8.94 7.97 -40.82 -0.33 8.61 16 31 H 0.14 2.73 5.64 -52.49 -0.30 2.43 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 33 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.12 1.88 7.61 -52.49 -0.40 1.48 16 35 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.12 1.28 6.56 -51.93 -0.34 0.94 16 LS Contribution 345.11 15.07 5.20 5.20 Total: -1.00 -34.59 345.11 -7.28 -41.87 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.19 Total: 5.80 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.69 Total: -1.48 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.09 Total: -32.26 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.62 Total: -36.37 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.09 Total: 17.23 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.59 -7.28 -41.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893611324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.074 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds