Wall clock time and date at job start Tue Mar 31 2020 17:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00276 * 2 1 4 4 H 1.48500 * 109.47177 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47310 * 120.00056 * 3 2 1 6 6 H 1.48503 * 109.46858 * 239.99718 * 3 2 1 7 7 C 1.38709 * 119.99864 * 180.26957 * 2 1 3 8 8 H 1.07994 * 120.00115 * 179.72706 * 7 2 1 9 9 O 1.34808 * 119.99632 * 359.72780 * 7 2 1 10 10 C 1.35509 * 117.00000 * 174.93681 * 9 7 2 11 11 C 1.38841 * 120.16198 * 5.59757 * 10 9 7 12 12 C 1.38027 * 120.07375 * 179.97438 * 11 10 9 13 13 C 1.38589 * 120.41509 * 0.02562 * 12 11 10 14 14 C 1.37803 * 120.33238 * 0.02562 * 13 12 11 15 15 C 1.39732 * 119.91340 * 359.71809 * 14 13 12 16 16 C 1.47399 * 120.20254 * 180.27886 * 15 14 13 17 17 O 1.21507 * 119.99723 * 180.25611 * 16 15 14 18 18 O 1.34752 * 120.00048 * 0.25283 * 16 15 14 19 19 C 1.45199 * 117.00176 * 180.02562 * 18 16 15 20 20 H 1.09000 * 110.76573 * 29.29494 * 19 18 16 21 21 C 1.55078 * 110.86219 * 265.79107 * 19 18 16 22 22 C 1.54985 * 104.64895 * 263.87368 * 21 19 18 23 23 N 1.47103 * 106.47590 * 3.54455 * 22 21 19 24 24 C 1.33464 * 147.09314 * 144.69637 * 23 22 21 25 25 O 1.21511 * 123.33446 * 21.43028 * 24 23 22 26 26 O 1.34108 * 113.33880 * 201.41274 * 24 23 22 27 27 C 1.47407 * 109.51757 * 353.05559 * 26 24 23 28 28 C 1.48598 * 104.93433 * 330.77036 * 23 22 21 29 29 H 1.09004 * 112.90661 * 282.07719 * 28 23 22 30 30 H 0.97001 * 120.00373 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.95967 * 359.97376 * 11 10 9 32 32 H 1.07998 * 119.78940 * 179.97438 * 12 11 10 33 33 H 1.07996 * 119.83087 * 180.02562 * 13 12 11 34 34 H 1.07999 * 120.04029 * 179.97438 * 14 13 12 35 35 H 1.09000 * 110.34757 * 22.77984 * 21 19 18 36 36 H 1.08990 * 110.35330 * 145.07097 * 21 19 18 37 37 H 1.09000 * 110.02473 * 244.29294 * 22 21 19 38 38 H 1.09005 * 110.10488 * 122.83522 * 22 21 19 39 39 H 1.09003 * 111.05812 * 237.55019 * 27 26 24 40 40 H 1.08998 * 110.74189 * 114.20568 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6962 -1.2125 7 6 2.0086 -1.2013 -0.0057 8 1 3.0885 -1.2013 -0.0101 9 8 1.3345 -2.3687 -0.0056 10 6 2.0679 -3.5026 -0.1178 11 6 3.4549 -3.4400 -0.1095 12 6 4.2001 -4.5962 -0.2234 13 6 3.5730 -5.8258 -0.3472 14 6 2.1974 -5.9075 -0.3585 15 6 1.4294 -4.7463 -0.2387 16 6 -0.0424 -4.8269 -0.2439 17 8 -0.7066 -3.8143 -0.1441 18 8 -0.6512 -6.0235 -0.3592 19 6 -2.1032 -6.0272 -0.3575 20 1 -2.4925 -5.0953 -0.7675 21 6 -2.6532 -6.2742 1.0713 22 6 -2.9383 -7.7967 1.1238 23 7 -2.4856 -8.3505 -0.1617 24 6 -1.9275 -9.3783 -0.8046 25 8 -1.9085 -10.5106 -0.3641 26 8 -1.3900 -9.0378 -1.9851 27 6 -1.7286 -7.6370 -2.2948 28 6 -2.6502 -7.2407 -1.1360 29 1 -3.6844 -7.1035 -1.4521 30 1 -0.4851 -0.8400 0.0004 31 1 3.9511 -2.4855 -0.0138 32 1 5.2787 -4.5421 -0.2167 33 1 4.1653 -6.7246 -0.4353 34 1 1.7136 -6.8682 -0.4556 35 1 -1.9075 -5.9992 1.8172 36 1 -3.5723 -5.7094 1.2266 37 1 -4.0065 -7.9722 1.2512 38 1 -2.3842 -8.2536 1.9437 39 1 -2.2554 -7.5625 -3.2462 40 1 -0.8330 -7.0158 -2.3019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893611324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:29 Heat of formation + Delta-G solvation = -153.207402 kcal Electronic energy + Delta-G solvation = -28982.680175 eV Core-core repulsion = 24728.768502 eV Total energy + Delta-G solvation = -4253.911673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.98159 -41.63133 -40.57570 -38.84451 -38.29021 -38.02278 -36.85581 -34.37530 -32.71538 -32.09374 -31.42365 -30.68726 -27.54589 -27.01188 -25.40487 -24.40565 -23.52025 -22.66526 -22.10891 -21.38457 -20.33491 -19.52584 -18.71945 -18.34240 -18.07972 -17.84208 -17.08938 -17.06084 -16.74224 -16.18236 -15.91552 -15.80355 -15.63505 -15.60409 -15.35479 -15.03787 -14.88789 -14.57849 -14.29976 -14.06371 -13.52963 -13.32628 -13.13078 -13.02178 -12.62891 -12.53490 -12.47408 -12.39178 -12.25735 -11.94057 -11.93030 -11.74825 -11.68302 -11.62403 -11.21037 -10.80557 -10.16855 -10.03556 -9.24161 -8.97392 -6.28236 -0.16810 0.58160 1.20183 1.43758 1.49224 1.53226 1.60741 1.62347 1.78762 2.32141 2.32492 2.78602 2.90175 3.06512 3.13297 3.18520 3.37879 3.64371 3.82332 3.95756 3.96974 4.02029 4.12208 4.20396 4.27653 4.42169 4.46352 4.48313 4.58815 4.63316 4.75457 4.81593 4.89686 5.00376 5.13171 5.22680 5.31393 5.40288 5.52323 5.59342 5.94343 6.19580 6.26593 6.77313 6.79748 6.87209 7.54181 8.46165 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.003454 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.581076 B = 8103.629407 C = 9217.171632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.037 4.037 3 Si 1.144 2.856 4 H -0.275 1.275 5 H -0.258 1.258 6 H -0.258 1.258 7 C -0.500 4.500 8 H 0.100 0.900 9 O -0.203 6.203 10 C 0.164 3.836 11 C -0.254 4.254 12 C -0.026 4.026 13 C -0.204 4.204 14 C -0.013 4.013 15 C -0.236 4.236 16 C 0.511 3.489 17 O -0.526 6.526 18 O -0.343 6.343 19 C 0.064 3.936 20 H 0.108 0.892 21 C -0.145 4.145 22 C 0.158 3.842 23 N -0.639 5.639 24 C 0.677 3.323 25 O -0.567 6.567 26 O -0.340 6.340 27 C 0.044 3.956 28 C 0.067 3.933 29 H 0.175 0.825 30 H 0.267 0.733 31 H 0.130 0.870 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.070 0.930 36 H 0.127 0.873 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.152 0.848 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.202 -11.815 -2.267 12.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.236 4.236 3 Si 0.960 3.040 4 H -0.200 1.200 5 H -0.182 1.182 6 H -0.182 1.182 7 C -0.575 4.575 8 H 0.117 0.883 9 O -0.106 6.106 10 C 0.109 3.891 11 C -0.273 4.273 12 C -0.044 4.044 13 C -0.222 4.222 14 C -0.031 4.031 15 C -0.239 4.239 16 C 0.358 3.642 17 O -0.416 6.416 18 O -0.261 6.261 19 C 0.008 3.992 20 H 0.126 0.874 21 C -0.183 4.183 22 C 0.040 3.960 23 N -0.387 5.387 24 C 0.432 3.568 25 O -0.456 6.456 26 O -0.250 6.250 27 C -0.030 4.030 28 C -0.038 4.038 29 H 0.192 0.808 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.177 0.823 33 H 0.179 0.821 34 H 0.166 0.834 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.169 0.831 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.729 -10.737 -2.048 11.266 hybrid contribution -0.002 -1.297 0.229 1.317 sum -2.730 -12.034 -1.820 12.473 Atomic orbital electron populations 1.70609 1.07974 1.30954 1.43992 1.28454 0.96786 1.04940 0.93392 0.82610 0.73813 0.68671 0.78951 1.20026 1.18235 1.18198 1.22823 0.94057 0.82941 1.57690 0.88286 1.83824 1.36205 1.12767 1.77780 1.19787 0.91646 0.86397 0.91222 1.21324 0.92049 1.01164 1.12740 1.21524 1.01099 0.90924 0.90855 1.21213 0.93777 0.98747 1.08464 1.21304 0.94448 0.95723 0.91651 1.18430 0.89130 0.92935 1.23399 1.21108 0.89160 0.81031 0.72872 1.90922 1.66774 1.37028 1.46924 1.86570 1.22975 1.32344 1.84201 1.23810 0.77149 1.00066 0.98132 0.87369 1.23403 1.03819 0.95773 0.95280 1.22176 1.01540 0.91025 0.81305 1.49035 1.64043 1.13614 1.12012 1.17609 0.75982 0.83690 0.79487 1.90985 1.64150 1.20754 1.69674 1.87634 1.69142 1.32711 1.35502 1.24650 1.01269 0.77022 1.00034 1.24086 1.03017 0.86781 0.89894 0.80833 0.92383 0.85197 0.82265 0.82132 0.83418 0.91077 0.85457 0.86715 0.90215 0.83067 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.10 13.69 21.62 0.30 -55.80 16 2 C -0.04 -2.06 5.49 84.85 0.47 -1.59 16 3 Si 1.14 46.30 29.92 68.60 2.05 48.36 16 4 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 6 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 7 C -0.50 -28.30 9.49 67.93 0.64 -27.65 16 8 H 0.10 5.08 5.21 -2.91 -0.02 5.07 16 9 O -0.20 -11.75 7.24 1.02 0.01 -11.75 16 10 C 0.16 7.86 6.66 22.92 0.15 8.01 16 11 C -0.25 -10.17 9.16 22.36 0.20 -9.97 16 12 C -0.03 -0.77 10.03 22.30 0.22 -0.55 16 13 C -0.20 -5.52 10.02 22.25 0.22 -5.30 16 14 C -0.01 -0.42 9.61 22.53 0.22 -0.20 16 15 C -0.24 -9.71 5.89 -20.00 -0.12 -9.82 16 16 C 0.51 20.63 7.89 70.23 0.55 21.18 16 17 O -0.53 -25.74 14.45 26.81 0.39 -25.35 16 18 O -0.34 -10.36 7.53 -56.62 -0.43 -10.79 16 19 C 0.06 1.44 3.15 31.71 0.10 1.54 16 20 H 0.11 2.60 7.22 -2.39 -0.02 2.58 16 21 C -0.14 -2.66 6.78 31.99 0.22 -2.44 16 22 C 0.16 2.57 7.63 86.94 0.66 3.23 16 23 N -0.64 -13.76 3.95 -918.33 -3.63 -17.39 16 24 C 0.68 19.39 9.10 130.00 1.18 20.57 16 25 O -0.57 -20.83 18.04 19.62 0.35 -20.47 16 26 O -0.34 -8.71 11.17 -50.50 -0.56 -9.27 16 27 C 0.04 0.75 7.78 72.07 0.56 1.31 16 28 C 0.07 1.08 3.98 45.09 0.18 1.26 16 29 H 0.17 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.27 17.74 7.97 -92.71 -0.74 17.00 16 31 H 0.13 5.27 5.64 -2.91 -0.02 5.26 16 32 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.15 3.97 7.61 -2.91 -0.02 3.95 16 35 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 36 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.10 2.09 6.56 -2.39 -0.02 2.07 16 Total: -1.00 -84.93 345.11 5.08 -79.85 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 1.13 Total: 23.04 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 5.47 Total: -0.42 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -3.33 Total: -73.19 kcal Atomic # 8 Polarization: -77.39 SS G_CDS: -0.24 Total: -77.63 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.05 Total: 48.36 kcal Total: -84.93 5.08 -79.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893611324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.358 kcal (2) G-P(sol) polarization free energy of solvation -84.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds