Wall clock time and date at job start Tue Mar 31 2020 19:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35896 * 117.00048 * 2 1 4 4 C 1.38794 * 120.02838 * 0.02562 * 3 2 1 5 5 C 1.38148 * 120.05863 * 179.97438 * 4 3 2 6 6 C 1.38200 * 120.10433 * 359.74267 * 5 4 3 7 7 C 1.38755 * 120.05672 * 0.51079 * 6 5 4 8 8 O 1.35899 * 120.02560 * 179.76932 * 7 6 5 9 9 C 1.42901 * 117.00336 * 359.72324 * 8 7 6 10 10 C 1.50694 * 109.47059 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00087 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00154 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00272 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47018 * 324.99735 * 13 12 10 15 15 C 1.50703 * 109.46753 * 205.00117 * 13 12 10 16 16 H 1.08003 * 119.99236 * 245.22948 * 15 13 12 17 17 C 1.37874 * 120.00448 * 65.23566 * 15 13 12 18 18 N 1.31513 * 120.00101 * 175.10689 * 17 15 13 19 19 Si 1.86803 * 119.99733 * 355.09916 * 17 15 13 20 20 H 1.48498 * 109.47257 * 275.09534 * 19 17 15 21 21 H 1.48494 * 109.46908 * 35.09973 * 19 17 15 22 22 H 1.48499 * 109.46647 * 155.09856 * 19 17 15 23 23 C 1.52996 * 109.47152 * 84.99890 * 13 12 10 24 24 F 1.39906 * 109.46673 * 174.98536 * 23 13 12 25 25 F 1.39902 * 109.46921 * 294.98233 * 23 13 12 26 26 F 1.39896 * 109.47325 * 54.98809 * 23 13 12 27 27 C 1.38606 * 120.02904 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.46751 * 299.99910 * 1 2 3 29 29 H 1.09000 * 109.46921 * 59.99800 * 1 2 3 30 30 H 1.09001 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.08008 * 119.97193 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.95138 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.97242 * 180.25900 * 6 5 4 34 34 H 1.08996 * 109.47121 * 59.99885 * 9 8 7 35 35 H 1.08998 * 109.46932 * 300.00281 * 9 8 7 36 36 H 0.97001 * 119.99955 * 0.02562 * 12 10 9 37 37 H 0.96999 * 120.00267 * 179.97438 * 18 17 15 38 38 H 1.08007 * 120.05356 * 0.04394 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2907 2.3752 0.0005 5 6 1.9172 3.6065 0.0011 6 6 3.2971 3.6820 0.0064 7 6 4.0567 2.5209 0.0006 8 8 5.4137 2.5960 0.0012 9 6 5.9912 3.9031 0.0018 10 6 7.4937 3.7884 0.0017 11 8 8.0184 2.6949 0.0007 12 7 8.2545 4.9008 0.0027 13 6 9.7153 4.7893 0.0020 14 1 10.0137 3.9216 0.5904 15 6 10.3143 6.0344 0.6038 16 1 10.9154 6.6932 -0.0055 17 6 10.0952 6.3324 1.9320 18 7 10.6953 7.3655 2.4818 19 14 8.9457 5.2690 2.9505 20 1 7.5469 5.7302 2.7613 21 1 9.0638 3.8544 2.5144 22 1 9.3128 5.3770 4.3853 23 6 10.2137 4.6268 -1.4353 24 9 11.6127 4.6351 -1.4474 25 9 9.7501 3.4136 -1.9552 26 9 9.7344 5.6830 -2.2174 27 6 3.4301 1.2841 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2121 2.3187 0.0005 32 1 1.3278 4.5114 0.0019 33 1 3.7847 4.6457 0.0111 34 1 5.6676 4.4428 0.8917 35 1 5.6683 4.4433 -0.8882 36 1 7.8349 5.7754 0.0039 37 1 10.5408 7.5754 3.4161 38 1 4.0197 0.3791 -0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928812019.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:02 Heat of formation + Delta-G solvation = -234.442948 kcal Electronic energy + Delta-G solvation = -28678.218749 eV Core-core repulsion = 23878.927698 eV Total energy + Delta-G solvation = -4799.291051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.14605 -46.65875 -46.62914 -40.65971 -39.63238 -38.61192 -36.49430 -34.95741 -32.62981 -31.34690 -30.15671 -29.50425 -27.91784 -27.04847 -25.08902 -23.00293 -22.23237 -21.35264 -20.15445 -18.96127 -18.35705 -17.62969 -17.20024 -16.91782 -16.72853 -16.50477 -16.33972 -16.23465 -15.92207 -15.69389 -15.18913 -14.68340 -14.02189 -13.91527 -13.77591 -13.54358 -13.51942 -13.10683 -13.08983 -12.94021 -12.83183 -12.79207 -12.72957 -12.67042 -12.35790 -11.88355 -11.86771 -11.57561 -11.21647 -11.02370 -10.90917 -10.73895 -10.29619 -9.93210 -9.55747 -9.05356 -8.68517 -8.60328 -8.31631 -6.58438 -4.72788 1.18514 1.23107 2.48163 2.84786 2.99095 3.14656 3.19392 3.24582 3.56298 3.77472 3.93320 4.03660 4.51568 4.67842 4.77369 4.82386 4.83042 4.86672 4.89132 4.94675 5.05853 5.07384 5.10487 5.13846 5.14836 5.33308 5.38221 5.74394 5.99177 6.04340 6.22639 6.29028 6.32303 6.79527 6.92499 7.08692 7.26770 7.75198 8.08562 8.43673 8.60846 8.94640 10.49670 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.017054 B = 0.003077 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.461584 B = 9096.776578 C = 9969.304237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.164 3.836 4 C -0.249 4.249 5 C -0.040 4.040 6 C -0.247 4.247 7 C 0.173 3.827 8 O -0.283 6.283 9 C 0.036 3.964 10 C 0.500 3.500 11 O -0.513 6.513 12 N -0.714 5.714 13 C 0.205 3.795 14 H 0.094 0.906 15 C -0.537 4.537 16 H 0.097 0.903 17 C 0.096 3.904 18 N -0.859 5.859 19 Si 0.876 3.124 20 H -0.272 1.272 21 H -0.256 1.256 22 H -0.285 1.285 23 C 0.443 3.557 24 F -0.182 7.182 25 F -0.193 7.193 26 F -0.190 7.190 27 C -0.186 4.186 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.402 0.598 37 H 0.276 0.724 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.127 -6.089 -3.814 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.118 3.882 4 C -0.268 4.268 5 C -0.058 4.058 6 C -0.266 4.266 7 C 0.126 3.874 8 O -0.194 6.194 9 C -0.042 4.042 10 C 0.284 3.716 11 O -0.387 6.387 12 N -0.370 5.370 13 C 0.103 3.897 14 H 0.112 0.888 15 C -0.575 4.575 16 H 0.115 0.885 17 C -0.114 4.114 18 N -0.492 5.492 19 Si 0.703 3.297 20 H -0.197 1.197 21 H -0.180 1.180 22 H -0.211 1.211 23 C 0.387 3.613 24 F -0.164 7.164 25 F -0.174 7.174 26 F -0.172 7.172 27 C -0.205 4.205 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.239 0.761 37 H 0.086 0.914 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.447 -7.130 -3.676 20.116 hybrid contribution -1.090 0.466 0.368 1.241 sum -19.537 -6.665 -3.308 20.906 Atomic orbital electron populations 1.23071 0.78179 1.03961 1.01458 1.86071 1.21488 1.26788 1.88441 1.18537 0.91268 0.84209 0.94176 1.21105 0.99978 0.92220 1.13460 1.20686 0.93652 0.97114 0.94351 1.21244 0.94989 0.97694 1.12648 1.18652 0.82407 0.93354 0.92979 1.86178 1.16615 1.28963 1.87684 1.22713 0.93188 0.84412 1.03920 1.20259 0.87803 0.85921 0.77599 1.90733 1.74148 1.26452 1.47387 1.47568 1.07742 1.08175 1.73521 1.20353 0.78641 1.03426 0.87291 0.88815 1.20799 1.33328 1.06844 0.96507 0.88537 1.24929 0.94713 0.94630 0.97084 1.69860 1.39428 1.26082 1.13832 0.86861 0.81053 0.82276 0.79552 1.19706 1.17966 1.21145 1.21421 0.75505 0.72681 0.91683 1.93119 1.30020 1.96192 1.97028 1.93160 1.88630 1.46417 1.89215 1.93081 1.88154 1.58017 1.77898 1.19427 0.91420 0.97018 1.12638 0.92549 0.92534 0.88190 0.85431 0.85389 0.85021 0.88980 0.88693 0.76114 0.91401 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.43 10.49 -19.41 -0.20 -3.63 16 3 C 0.16 1.95 6.68 -39.24 -0.26 1.69 16 4 C -0.25 -2.48 9.03 -39.41 -0.36 -2.83 16 5 C -0.04 -0.39 10.04 -39.63 -0.40 -0.79 16 6 C -0.25 -2.87 9.04 -39.40 -0.36 -3.22 16 7 C 0.17 2.44 6.68 -39.24 -0.26 2.18 16 8 O -0.28 -4.69 9.67 -39.33 -0.38 -5.07 16 9 C 0.04 0.54 5.22 36.00 0.19 0.73 16 10 C 0.50 9.66 7.11 -10.99 -0.08 9.58 16 11 O -0.51 -11.85 15.07 -14.36 -0.22 -12.07 16 12 N -0.71 -13.87 2.89 -54.93 -0.16 -14.03 16 13 C 0.21 4.59 1.42 -69.08 -0.10 4.49 16 14 H 0.09 2.25 6.52 -51.93 -0.34 1.91 16 15 C -0.54 -13.32 8.65 -34.44 -0.30 -13.62 16 16 H 0.10 2.62 7.95 -52.48 -0.42 2.20 16 17 C 0.10 2.43 5.47 -17.82 -0.10 2.33 16 18 N -0.86 -23.09 13.96 55.43 0.77 -22.32 16 19 Si 0.88 19.52 25.78 -169.99 -4.38 15.13 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.26 -5.95 6.57 56.52 0.37 -5.58 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.44 9.56 2.79 37.16 0.10 9.67 16 24 F -0.18 -4.01 16.86 2.25 0.04 -3.97 16 25 F -0.19 -4.19 15.83 2.25 0.04 -4.15 16 26 F -0.19 -3.93 16.97 2.25 0.04 -3.89 16 27 C -0.19 -2.55 9.92 -39.29 -0.39 -2.94 16 28 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 29 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.13 0.93 6.29 -52.48 -0.33 0.60 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.13 1.29 6.29 -52.49 -0.33 0.96 16 34 H 0.09 1.17 7.65 -51.93 -0.40 0.77 16 35 H 0.10 1.11 7.67 -51.93 -0.40 0.71 16 36 H 0.40 6.83 8.58 -40.82 -0.35 6.48 16 37 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.14 1.93 8.06 -52.48 -0.42 1.50 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -30.78 339.02 -4.45 -35.24 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -3.79 Total: 5.22 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -1.31 Total: 8.43 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.62 Total: -36.35 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.80 Total: -20.77 kcal Atomic # 9 Polarization: -12.13 SS G_CDS: 0.11 Total: -12.02 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.38 Total: 15.13 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.78 -4.45 -35.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928812019.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.208 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds