Wall clock time and date at job start Tue Mar 31 2020 19:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35896 * 117.00048 * 2 1 4 4 C 1.38794 * 120.02838 * 0.02562 * 3 2 1 5 5 C 1.38148 * 120.05863 * 179.97438 * 4 3 2 6 6 C 1.38200 * 120.10433 * 359.74267 * 5 4 3 7 7 C 1.38755 * 120.05672 * 0.51079 * 6 5 4 8 8 O 1.35899 * 120.02560 * 179.76932 * 7 6 5 9 9 C 1.42901 * 117.00336 * 359.72324 * 8 7 6 10 10 C 1.50694 * 109.47059 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00087 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00154 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00272 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47018 * 324.99735 * 13 12 10 15 15 C 1.50703 * 109.46753 * 205.00117 * 13 12 10 16 16 H 1.08003 * 119.99236 * 245.22948 * 15 13 12 17 17 C 1.37874 * 120.00448 * 65.23566 * 15 13 12 18 18 N 1.31513 * 120.00101 * 175.10689 * 17 15 13 19 19 Si 1.86803 * 119.99733 * 355.09916 * 17 15 13 20 20 H 1.48498 * 109.47257 * 275.09534 * 19 17 15 21 21 H 1.48494 * 109.46908 * 35.09973 * 19 17 15 22 22 H 1.48499 * 109.46647 * 155.09856 * 19 17 15 23 23 C 1.52996 * 109.47152 * 84.99890 * 13 12 10 24 24 F 1.39906 * 109.46673 * 174.98536 * 23 13 12 25 25 F 1.39902 * 109.46921 * 294.98233 * 23 13 12 26 26 F 1.39896 * 109.47325 * 54.98809 * 23 13 12 27 27 C 1.38606 * 120.02904 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.46751 * 299.99910 * 1 2 3 29 29 H 1.09000 * 109.46921 * 59.99800 * 1 2 3 30 30 H 1.09001 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.08008 * 119.97193 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.95138 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.97242 * 180.25900 * 6 5 4 34 34 H 1.08996 * 109.47121 * 59.99885 * 9 8 7 35 35 H 1.08998 * 109.46932 * 300.00281 * 9 8 7 36 36 H 0.97001 * 119.99955 * 0.02562 * 12 10 9 37 37 H 0.96999 * 120.00267 * 179.97438 * 18 17 15 38 38 H 1.08007 * 120.05356 * 0.04394 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2907 2.3752 0.0005 5 6 1.9172 3.6065 0.0011 6 6 3.2971 3.6820 0.0064 7 6 4.0567 2.5209 0.0006 8 8 5.4137 2.5960 0.0012 9 6 5.9912 3.9031 0.0018 10 6 7.4937 3.7884 0.0017 11 8 8.0184 2.6949 0.0007 12 7 8.2545 4.9008 0.0027 13 6 9.7153 4.7893 0.0020 14 1 10.0137 3.9216 0.5904 15 6 10.3143 6.0344 0.6038 16 1 10.9154 6.6932 -0.0055 17 6 10.0952 6.3324 1.9320 18 7 10.6953 7.3655 2.4818 19 14 8.9457 5.2690 2.9505 20 1 7.5469 5.7302 2.7613 21 1 9.0638 3.8544 2.5144 22 1 9.3128 5.3770 4.3853 23 6 10.2137 4.6268 -1.4353 24 9 11.6127 4.6351 -1.4474 25 9 9.7501 3.4136 -1.9552 26 9 9.7344 5.6830 -2.2174 27 6 3.4301 1.2841 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2121 2.3187 0.0005 32 1 1.3278 4.5114 0.0019 33 1 3.7847 4.6457 0.0111 34 1 5.6676 4.4428 0.8917 35 1 5.6683 4.4433 -0.8882 36 1 7.8349 5.7754 0.0039 37 1 10.5408 7.5754 3.4161 38 1 4.0197 0.3791 -0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928812019.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:59 Heat of formation + Delta-G solvation = -254.276938 kcal Electronic energy + Delta-G solvation = -28679.078815 eV Core-core repulsion = 23878.927698 eV Total energy + Delta-G solvation = -4800.151117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.91898 -48.43225 -48.39535 -41.63218 -40.84142 -39.79022 -37.41016 -36.69244 -34.50690 -32.32975 -31.53816 -30.48295 -28.95674 -27.88783 -26.97686 -23.91674 -23.49691 -22.70520 -21.66219 -20.14654 -19.84645 -19.37767 -18.80971 -18.46057 -18.24341 -17.70389 -17.42034 -17.18107 -16.76435 -16.73529 -16.61827 -16.01149 -15.49719 -15.36323 -15.29011 -15.08699 -14.86697 -14.77617 -14.60069 -14.59034 -14.53442 -14.39699 -13.83360 -13.75441 -13.49032 -13.07570 -12.94411 -12.63037 -12.60401 -12.42482 -12.13539 -11.89014 -11.82119 -11.71060 -11.20877 -10.88784 -10.28960 -9.57719 -9.15610 -8.54078 -6.73008 0.34315 0.38072 1.19608 1.27634 1.37114 1.41594 1.49448 2.01945 2.18697 2.20415 2.69658 2.72130 2.97576 3.12236 3.31437 3.39278 3.66371 3.81940 3.92960 4.04546 4.10824 4.12622 4.18376 4.39544 4.41931 4.48989 4.53781 4.73232 4.83458 4.92665 5.20758 5.23937 5.26849 5.42846 5.50261 5.85400 6.22083 6.41096 6.42012 6.52623 6.97780 7.09873 8.58047 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.017054 B = 0.003077 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.461584 B = 9096.776578 C = 9969.304237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.156 3.844 4 C -0.242 4.242 5 C -0.035 4.035 6 C -0.249 4.249 7 C 0.149 3.851 8 O -0.316 6.316 9 C 0.043 3.957 10 C 0.497 3.503 11 O -0.556 6.556 12 N -0.709 5.709 13 C 0.214 3.786 14 H 0.076 0.924 15 C -0.540 4.540 16 H 0.066 0.934 17 C 0.062 3.938 18 N -0.900 5.900 19 Si 0.925 3.075 20 H -0.233 1.233 21 H -0.275 1.275 22 H -0.288 1.288 23 C 0.446 3.554 24 F -0.186 7.186 25 F -0.192 7.192 26 F -0.182 7.182 27 C -0.216 4.216 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.117 0.883 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.153 0.847 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.418 0.582 37 H 0.280 0.720 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.858 -5.376 -3.819 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.111 3.889 4 C -0.261 4.261 5 C -0.053 4.053 6 C -0.268 4.268 7 C 0.104 3.896 8 O -0.229 6.229 9 C -0.035 4.035 10 C 0.284 3.716 11 O -0.434 6.434 12 N -0.365 5.365 13 C 0.110 3.890 14 H 0.094 0.906 15 C -0.577 4.577 16 H 0.084 0.916 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.750 3.250 20 H -0.157 1.157 21 H -0.200 1.200 22 H -0.215 1.215 23 C 0.390 3.610 24 F -0.168 7.168 25 F -0.173 7.173 26 F -0.164 7.164 27 C -0.235 4.235 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.176 0.824 32 H 0.182 0.818 33 H 0.171 0.829 34 H 0.139 0.861 35 H 0.150 0.850 36 H 0.257 0.743 37 H 0.090 0.910 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -22.229 -6.388 -3.694 23.422 hybrid contribution 0.007 0.157 0.296 0.335 sum -22.222 -6.231 -3.399 23.328 Atomic orbital electron populations 1.23406 0.75797 1.05696 1.02706 1.86048 1.24001 1.26752 1.88303 1.18661 0.90803 0.85393 0.94081 1.21491 1.01454 0.91472 1.11641 1.21147 0.93245 0.98395 0.92483 1.21526 0.95781 0.97448 1.12055 1.18828 0.81495 0.94417 0.94867 1.86105 1.18351 1.29867 1.88609 1.22714 0.89204 0.84608 1.06982 1.20997 0.89944 0.84705 0.75994 1.90718 1.75445 1.28031 1.49164 1.47076 1.06491 1.09385 1.73581 1.19924 0.80344 1.01403 0.87352 0.90589 1.20691 1.33536 1.06982 0.96522 0.91556 1.25486 0.95758 0.95350 0.97831 1.69939 1.41205 1.27887 1.14487 0.86095 0.81560 0.79577 0.77809 1.15658 1.19997 1.21491 1.21286 0.75325 0.72851 0.91531 1.93110 1.30411 1.96221 1.97043 1.93164 1.88595 1.46434 1.89153 1.93092 1.88018 1.57643 1.77631 1.19527 0.92634 0.96691 1.14672 0.91239 0.91167 0.86459 0.82410 0.81798 0.82925 0.86139 0.85045 0.74322 0.90995 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.98 10.49 -92.38 -0.97 -7.95 16 3 C 0.16 3.52 6.68 22.49 0.15 3.67 16 4 C -0.24 -3.97 9.03 22.38 0.20 -3.77 16 5 C -0.03 -0.54 10.04 22.24 0.22 -0.32 16 6 C -0.25 -4.93 9.04 22.38 0.20 -4.73 16 7 C 0.15 4.05 6.68 22.49 0.15 4.20 16 8 O -0.32 -10.22 9.67 -73.37 -0.71 -10.93 16 9 C 0.04 1.15 5.22 71.23 0.37 1.52 16 10 C 0.50 18.50 7.11 87.66 0.62 19.13 16 11 O -0.56 -25.77 15.07 15.99 0.24 -25.53 16 12 N -0.71 -26.48 2.89 -446.10 -1.29 -27.77 16 13 C 0.21 9.57 1.42 44.24 0.06 9.63 16 14 H 0.08 3.70 6.52 -2.39 -0.02 3.69 16 15 C -0.54 -27.04 8.65 25.60 0.22 -26.82 16 16 H 0.07 3.69 7.95 -2.91 -0.02 3.67 16 17 C 0.06 3.13 5.47 84.65 0.46 3.59 16 18 N -0.90 -48.79 13.96 21.45 0.30 -48.49 16 19 Si 0.93 39.49 25.78 68.60 1.77 41.26 16 20 H -0.23 -8.48 7.11 99.48 0.71 -7.77 16 21 H -0.27 -12.59 6.57 99.48 0.65 -11.94 16 22 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 23 C 0.45 19.25 2.79 71.98 0.20 19.45 16 24 F -0.19 -8.30 16.86 44.97 0.76 -7.54 16 25 F -0.19 -8.33 15.83 44.97 0.71 -7.61 16 26 F -0.18 -7.43 16.97 44.97 0.76 -6.66 16 27 C -0.22 -5.96 9.92 22.46 0.22 -5.74 16 28 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 29 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 30 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.16 1.56 6.29 -2.91 -0.02 1.54 16 32 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 33 H 0.15 2.26 6.29 -2.91 -0.02 2.24 16 34 H 0.12 2.55 7.65 -2.39 -0.02 2.54 16 35 H 0.13 2.55 7.67 -2.39 -0.02 2.53 16 36 H 0.42 13.15 8.58 -92.71 -0.80 12.35 16 37 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 38 H 0.12 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -69.13 339.02 6.07 -63.06 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.29 Total: 17.06 kcal Atomic # 6 Polarization: 16.89 SS G_CDS: 4.21 Total: 21.10 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -0.99 Total: -76.26 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -1.44 Total: -44.40 kcal Atomic # 9 Polarization: -24.05 SS G_CDS: 2.23 Total: -21.81 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.77 Total: 41.26 kcal Total: -69.13 6.07 -63.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928812019.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.219 kcal (2) G-P(sol) polarization free energy of solvation -69.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds