Wall clock time and date at job start Tue Mar 31 2020 19:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35980 * 117.00014 * 2 1 4 4 C 1.38696 * 119.99880 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.99993 * 180.02562 * 4 3 2 6 6 C 1.38693 * 119.99833 * 0.02562 * 5 4 3 7 7 O 1.35986 * 119.99620 * 179.97438 * 6 5 4 8 8 C 1.42905 * 116.99395 * 179.97438 * 7 6 5 9 9 C 1.50709 * 109.46650 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99688 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99943 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.47078 * 34.99474 * 12 11 9 14 14 C 1.50694 * 109.47115 * 154.99835 * 12 11 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.53000 * 109.47021 * 275.00054 * 12 11 9 23 23 F 1.39897 * 109.46935 * 299.99908 * 22 12 11 24 24 F 1.39899 * 109.47307 * 59.99998 * 22 12 11 25 25 F 1.39901 * 109.47163 * 180.02562 * 22 12 11 26 26 C 1.38699 * 120.00418 * 0.24887 * 6 5 4 27 27 C 1.38135 * 119.99396 * 359.49952 * 26 6 5 28 28 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47243 * 299.99940 * 1 2 3 30 30 H 1.08994 * 109.47379 * 59.99607 * 1 2 3 31 31 H 1.08002 * 120.00526 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.99560 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.46927 * 60.00276 * 8 7 6 34 34 H 1.08995 * 109.47572 * 299.99835 * 8 7 6 35 35 H 0.96997 * 119.99849 * 0.02562 * 11 9 8 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 37 37 H 1.07994 * 120.00411 * 179.72360 * 26 6 5 38 38 H 1.08003 * 120.00002 * 180.22578 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4314 1.2841 -0.0005 5 6 4.0586 2.5150 0.0000 6 6 3.3032 3.6781 0.0016 7 8 3.9206 4.8897 0.0027 8 6 3.0806 6.0458 0.0037 9 6 3.9349 7.2874 0.0054 10 8 5.1439 7.1915 0.0052 11 7 3.3553 8.5042 0.0072 12 6 4.1857 9.7111 0.0083 13 1 5.0850 9.5339 -0.5818 14 6 3.4093 10.8555 -0.5905 15 1 2.3986 10.6994 -0.9375 16 6 3.9898 12.1017 -0.6962 17 7 5.2208 12.2917 -0.2740 18 14 3.0277 13.5201 -1.4390 19 1 3.2597 13.5616 -2.9052 20 1 1.5793 13.3294 -1.1722 21 1 3.4792 14.7971 -0.8300 22 6 4.5790 10.0582 1.4455 23 9 3.4249 10.2855 2.2028 24 9 5.2997 8.9957 2.0014 25 9 5.3715 11.2111 1.4467 26 6 1.9181 3.6056 0.0079 27 6 1.2910 2.3749 0.0021 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 4.0197 0.3784 -0.0014 32 1 5.1371 2.5714 0.0000 33 1 2.4515 6.0369 0.8938 34 1 2.4513 6.0386 -0.8862 35 1 2.3883 8.5807 0.0077 36 1 5.6292 13.1684 -0.3487 37 1 1.3300 4.5113 0.0137 38 1 0.2125 2.3183 0.0033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928817191.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:57 Heat of formation + Delta-G solvation = -214.440984 kcal Electronic energy + Delta-G solvation = -28468.565131 eV Core-core repulsion = 23670.141431 eV Total energy + Delta-G solvation = -4798.423700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.40257 -46.05781 -45.66299 -40.60977 -39.51326 -38.47977 -36.37122 -34.72326 -32.68670 -31.41297 -30.19353 -29.09216 -27.47980 -26.99323 -24.62212 -23.04658 -22.13734 -21.49495 -20.02607 -18.67832 -17.83894 -17.78442 -16.93496 -16.75034 -16.72139 -16.28230 -16.11173 -15.88633 -15.59272 -15.01710 -14.93672 -14.59234 -14.09935 -13.82732 -13.59879 -13.31549 -13.04604 -12.97967 -12.71435 -12.61162 -12.50551 -12.44731 -12.32963 -12.04247 -11.93069 -11.86699 -11.67492 -11.24671 -10.94592 -10.89426 -10.86624 -10.57033 -10.46231 -9.75025 -9.33013 -9.27002 -8.78755 -8.39527 -7.89000 -6.29568 -4.54379 1.06315 1.30195 2.77216 3.01004 3.07055 3.14961 3.21658 3.24317 3.55994 3.95782 4.16686 4.48524 4.52164 4.58177 4.79601 4.84098 4.86431 4.87402 5.01806 5.11061 5.12043 5.14898 5.26885 5.31706 5.66960 5.77419 5.80896 5.85115 6.07212 6.14205 6.15340 6.38425 6.83114 7.00510 7.09614 7.33162 7.39944 7.56441 8.15838 8.42388 8.72331 9.13656 10.62085 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.023545 B = 0.002469 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.917320 B =11339.240893 C =11868.897162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.083 3.917 4 C -0.110 4.110 5 C -0.110 4.110 6 C 0.101 3.899 7 O -0.286 6.286 8 C 0.043 3.957 9 C 0.507 3.493 10 O -0.511 6.511 11 N -0.708 5.708 12 C 0.247 3.753 13 H 0.087 0.913 14 C -0.554 4.554 15 H 0.078 0.922 16 C 0.065 3.935 17 N -0.838 5.838 18 Si 0.917 3.083 19 H -0.276 1.276 20 H -0.270 1.270 21 H -0.282 1.282 22 C 0.416 3.584 23 F -0.209 7.209 24 F -0.217 7.217 25 F -0.136 7.136 26 C -0.173 4.173 27 C -0.167 4.167 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.400 0.600 36 H 0.269 0.731 37 H 0.133 0.867 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.163 -17.337 0.069 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.039 3.961 4 C -0.129 4.129 5 C -0.128 4.128 6 C 0.055 3.945 7 O -0.198 6.198 8 C -0.036 4.036 9 C 0.290 3.710 10 O -0.385 6.385 11 N -0.360 5.360 12 C 0.142 3.858 13 H 0.105 0.895 14 C -0.591 4.591 15 H 0.097 0.903 16 C -0.144 4.144 17 N -0.471 5.471 18 Si 0.743 3.257 19 H -0.202 1.202 20 H -0.195 1.195 21 H -0.208 1.208 22 C 0.360 3.640 23 F -0.191 7.191 24 F -0.199 7.199 25 F -0.117 7.117 26 C -0.192 4.192 27 C -0.186 4.186 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.234 0.766 36 H 0.080 0.920 37 H 0.150 0.850 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.789 -17.382 0.123 19.478 hybrid contribution -1.450 1.130 0.025 1.839 sum -10.239 -16.253 0.148 19.210 Atomic orbital electron populations 1.23019 0.78668 1.03765 1.01264 1.86064 1.21110 1.26789 1.89444 1.18895 0.92323 0.84162 1.00750 1.20226 0.91290 0.97805 1.03541 1.20296 1.00638 0.88825 1.03061 1.19009 0.91009 0.85706 0.98731 1.86211 1.34008 1.11020 1.88574 1.22530 0.93343 0.84357 1.03411 1.19953 0.88916 0.84273 0.77862 1.90756 1.13967 1.86456 1.47369 1.45927 1.10738 1.04965 1.74340 1.19766 0.95050 0.83055 0.87948 0.89541 1.20854 1.01254 0.92895 1.44079 0.90350 1.25096 0.95469 0.99244 0.94632 1.70399 1.12560 1.24215 1.39936 0.86187 0.79878 0.80484 0.79140 1.20153 1.19504 1.20753 1.23122 0.74324 0.75110 0.91424 1.92988 1.51664 1.94890 1.79554 1.93080 1.79571 1.58817 1.88427 1.93410 1.74148 1.47986 1.96134 1.21100 0.93356 0.98581 1.06130 1.21007 0.99940 0.91650 1.05960 0.88395 0.92774 0.92764 0.84484 0.84098 0.89297 0.89175 0.76626 0.92004 0.84950 0.85252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.16 10.50 -19.68 -0.21 -3.37 16 3 C 0.08 0.89 6.69 -39.24 -0.26 0.63 16 4 C -0.11 -1.18 9.98 -39.45 -0.39 -1.57 16 5 C -0.11 -1.31 9.98 -39.45 -0.39 -1.71 16 6 C 0.10 1.33 6.69 -39.24 -0.26 1.07 16 7 O -0.29 -4.53 9.67 -39.61 -0.38 -4.91 16 8 C 0.04 0.59 5.22 36.01 0.19 0.78 16 9 C 0.51 9.71 7.44 -10.98 -0.08 9.63 16 10 O -0.51 -12.18 15.07 -14.36 -0.22 -12.39 16 11 N -0.71 -13.69 4.98 -54.93 -0.27 -13.97 16 12 C 0.25 5.97 2.21 -69.09 -0.15 5.82 16 13 H 0.09 2.35 7.58 -51.92 -0.39 1.96 16 14 C -0.55 -13.67 8.46 -34.44 -0.29 -13.97 16 15 H 0.08 1.80 7.74 -52.49 -0.41 1.40 16 16 C 0.06 1.65 5.20 -17.82 -0.09 1.55 16 17 N -0.84 -22.61 9.50 55.43 0.53 -22.08 16 18 Si 0.92 19.62 29.54 -169.99 -5.02 14.60 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 C 0.42 10.51 2.81 37.16 0.10 10.61 16 23 F -0.21 -5.03 16.94 2.25 0.04 -4.99 16 24 F -0.22 -5.49 15.68 2.25 0.04 -5.46 16 25 F -0.14 -3.71 12.91 2.25 0.03 -3.68 16 26 C -0.17 -1.89 9.03 -39.45 -0.36 -2.25 16 27 C -0.17 -1.66 9.03 -39.45 -0.36 -2.01 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 31 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.09 1.00 7.65 -51.93 -0.40 0.60 16 34 H 0.09 0.98 7.67 -51.93 -0.40 0.58 16 35 H 0.40 6.33 8.54 -40.82 -0.35 5.98 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.13 1.18 6.29 -52.49 -0.33 0.84 16 38 H 0.13 0.96 6.29 -52.48 -0.33 0.63 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -32.04 338.31 -5.54 -37.57 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -3.80 Total: 3.84 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: -1.36 Total: 9.74 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.25 Total: -36.05 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.81 Total: -20.67 kcal Atomic # 9 Polarization: -14.23 SS G_CDS: 0.10 Total: -14.13 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.04 -5.54 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928817191.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.867 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds