Wall clock time and date at job start Tue Mar 31 2020 19:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35980 * 117.00014 * 2 1 4 4 C 1.38696 * 119.99880 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.99993 * 180.02562 * 4 3 2 6 6 C 1.38693 * 119.99833 * 0.02562 * 5 4 3 7 7 O 1.35986 * 119.99620 * 179.97438 * 6 5 4 8 8 C 1.42905 * 116.99395 * 179.97438 * 7 6 5 9 9 C 1.50709 * 109.46650 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99688 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99943 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.47078 * 34.99474 * 12 11 9 14 14 C 1.50694 * 109.47115 * 154.99835 * 12 11 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.53000 * 109.47021 * 275.00054 * 12 11 9 23 23 F 1.39897 * 109.46935 * 299.99908 * 22 12 11 24 24 F 1.39899 * 109.47307 * 59.99998 * 22 12 11 25 25 F 1.39901 * 109.47163 * 180.02562 * 22 12 11 26 26 C 1.38699 * 120.00418 * 0.24887 * 6 5 4 27 27 C 1.38135 * 119.99396 * 359.49952 * 26 6 5 28 28 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47243 * 299.99940 * 1 2 3 30 30 H 1.08994 * 109.47379 * 59.99607 * 1 2 3 31 31 H 1.08002 * 120.00526 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.99560 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.46927 * 60.00276 * 8 7 6 34 34 H 1.08995 * 109.47572 * 299.99835 * 8 7 6 35 35 H 0.96997 * 119.99849 * 0.02562 * 11 9 8 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 37 37 H 1.07994 * 120.00411 * 179.72360 * 26 6 5 38 38 H 1.08003 * 120.00002 * 180.22578 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4314 1.2841 -0.0005 5 6 4.0586 2.5150 0.0000 6 6 3.3032 3.6781 0.0016 7 8 3.9206 4.8897 0.0027 8 6 3.0806 6.0458 0.0037 9 6 3.9349 7.2874 0.0054 10 8 5.1439 7.1915 0.0052 11 7 3.3553 8.5042 0.0072 12 6 4.1857 9.7111 0.0083 13 1 5.0850 9.5339 -0.5818 14 6 3.4093 10.8555 -0.5905 15 1 2.3986 10.6994 -0.9375 16 6 3.9898 12.1017 -0.6962 17 7 5.2208 12.2917 -0.2740 18 14 3.0277 13.5201 -1.4390 19 1 3.2597 13.5616 -2.9052 20 1 1.5793 13.3294 -1.1722 21 1 3.4792 14.7971 -0.8300 22 6 4.5790 10.0582 1.4455 23 9 3.4249 10.2855 2.2028 24 9 5.2997 8.9957 2.0014 25 9 5.3715 11.2111 1.4467 26 6 1.9181 3.6056 0.0079 27 6 1.2910 2.3749 0.0021 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 4.0197 0.3784 -0.0014 32 1 5.1371 2.5714 0.0000 33 1 2.4515 6.0369 0.8938 34 1 2.4513 6.0386 -0.8862 35 1 2.3883 8.5807 0.0077 36 1 5.6292 13.1684 -0.3487 37 1 1.3300 4.5113 0.0137 38 1 0.2125 2.3183 0.0033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928817191.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:56 Heat of formation + Delta-G solvation = -235.300195 kcal Electronic energy + Delta-G solvation = -28469.469655 eV Core-core repulsion = 23670.141431 eV Total energy + Delta-G solvation = -4799.328224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.43642 -48.07223 -47.74355 -41.52783 -40.69799 -39.64072 -37.27115 -36.49037 -34.52107 -32.22811 -31.44046 -30.29775 -28.55071 -27.83564 -26.58706 -24.11723 -23.31120 -22.78345 -21.63160 -19.60969 -19.38696 -18.92645 -18.71050 -18.59826 -18.43786 -17.49709 -17.25598 -17.10712 -16.78204 -16.54691 -16.01709 -15.73117 -15.32070 -15.10073 -14.97703 -14.81852 -14.54208 -14.47703 -14.32157 -14.28167 -14.10252 -14.00429 -13.86507 -13.53675 -13.37507 -13.07719 -12.78669 -12.62601 -12.60651 -12.44462 -12.21955 -11.69700 -11.60886 -11.39252 -10.90659 -10.69074 -10.14885 -10.07127 -8.73797 -8.21967 -6.53253 0.26579 0.45492 1.46322 1.47471 1.52469 1.57173 1.62771 2.35555 2.42993 2.49286 2.73569 2.73928 2.93690 3.53350 3.76199 3.82095 3.84631 3.87560 4.02043 4.12968 4.19927 4.20988 4.34670 4.45505 4.49327 4.53424 4.78579 4.86597 4.92295 5.04582 5.28077 5.32474 5.33562 5.51157 5.58281 5.63556 6.27862 6.50899 6.51874 6.65441 7.15029 7.27952 8.70869 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.023545 B = 0.002469 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.917320 B =11339.240893 C =11868.897162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.080 3.920 4 C -0.118 4.118 5 C -0.124 4.124 6 C 0.074 3.926 7 O -0.320 6.320 8 C 0.052 3.948 9 C 0.501 3.499 10 O -0.567 6.567 11 N -0.698 5.698 12 C 0.253 3.747 13 H 0.047 0.953 14 C -0.560 4.560 15 H 0.098 0.902 16 C 0.013 3.987 17 N -0.876 5.876 18 Si 0.985 3.015 19 H -0.271 1.271 20 H -0.255 1.255 21 H -0.287 1.287 22 C 0.413 3.587 23 F -0.201 7.201 24 F -0.221 7.221 25 F -0.151 7.151 26 C -0.169 4.169 27 C -0.165 4.165 28 H 0.117 0.883 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.150 0.850 32 H 0.137 0.863 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.419 0.581 36 H 0.268 0.732 37 H 0.157 0.843 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.634 -18.151 -0.362 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.035 3.965 4 C -0.136 4.136 5 C -0.142 4.142 6 C 0.029 3.971 7 O -0.234 6.234 8 C -0.025 4.025 9 C 0.287 3.713 10 O -0.445 6.445 11 N -0.351 5.351 12 C 0.146 3.854 13 H 0.064 0.936 14 C -0.597 4.597 15 H 0.116 0.884 16 C -0.192 4.192 17 N -0.510 5.510 18 Si 0.808 3.192 19 H -0.196 1.196 20 H -0.179 1.179 21 H -0.213 1.213 22 C 0.356 3.644 23 F -0.183 7.183 24 F -0.203 7.203 25 F -0.132 7.132 26 C -0.188 4.188 27 C -0.184 4.184 28 H 0.135 0.865 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.168 0.832 32 H 0.155 0.845 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.257 0.743 36 H 0.078 0.922 37 H 0.175 0.825 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.326 -18.233 -0.308 22.011 hybrid contribution -0.395 1.238 0.186 1.313 sum -12.721 -16.995 -0.122 21.229 Atomic orbital electron populations 1.23330 0.76609 1.05503 1.02238 1.86054 1.23291 1.26420 1.89214 1.19091 0.92466 0.84973 1.00009 1.20391 0.91980 0.97765 1.03480 1.20418 1.00773 0.89359 1.03676 1.19223 0.92236 0.84753 1.00871 1.86144 1.35609 1.12164 1.89480 1.22534 0.91974 0.81346 1.06687 1.20947 0.88839 0.85552 0.75932 1.90730 1.16745 1.87290 1.49687 1.45726 1.11338 1.03950 1.74112 1.19343 0.94416 0.85049 0.86640 0.93576 1.21238 1.01968 0.92899 1.43551 0.88410 1.26040 0.96245 1.02054 0.94903 1.70540 1.14300 1.24677 1.41460 0.85135 0.79073 0.76760 0.78226 1.19630 1.17904 1.21276 1.23323 0.74303 0.74594 0.92143 1.92989 1.51029 1.94836 1.79405 1.93070 1.79769 1.58883 1.88537 1.93380 1.74675 1.48884 1.96258 1.21361 0.92408 1.00006 1.05001 1.21323 1.01375 0.90877 1.04807 0.86497 0.91755 0.91701 0.83234 0.84495 0.85996 0.85437 0.74300 0.92177 0.82538 0.82416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.89 10.50 -93.33 -0.98 -6.87 16 3 C 0.08 1.55 6.69 22.49 0.15 1.70 16 4 C -0.12 -2.43 9.98 22.36 0.22 -2.21 16 5 C -0.12 -2.96 9.98 22.35 0.22 -2.74 16 6 C 0.07 1.87 6.69 22.49 0.15 2.02 16 7 O -0.32 -9.97 9.67 -74.35 -0.72 -10.69 16 8 C 0.05 1.34 5.22 71.24 0.37 1.71 16 9 C 0.50 19.01 7.44 87.66 0.65 19.67 16 10 O -0.57 -27.87 15.07 16.00 0.24 -27.63 16 11 N -0.70 -26.40 4.98 -446.09 -2.22 -28.62 16 12 C 0.25 12.34 2.21 44.24 0.10 12.44 16 13 H 0.05 2.64 7.58 -2.38 -0.02 2.62 16 14 C -0.56 -27.23 8.46 25.60 0.22 -27.02 16 15 H 0.10 4.27 7.74 -2.91 -0.02 4.24 16 16 C 0.01 0.65 5.20 84.66 0.44 1.09 16 17 N -0.88 -48.10 9.50 21.45 0.20 -47.89 16 18 Si 0.98 39.45 29.54 68.60 2.03 41.48 16 19 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 20 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 21 H -0.29 -11.64 7.11 99.48 0.71 -10.93 16 22 C 0.41 21.11 2.81 71.98 0.20 21.31 16 23 F -0.20 -9.54 16.94 44.97 0.76 -8.77 16 24 F -0.22 -11.43 15.68 44.97 0.70 -10.72 16 25 F -0.15 -8.47 12.91 44.97 0.58 -7.89 16 26 C -0.17 -3.22 9.03 22.36 0.20 -3.02 16 27 C -0.17 -2.78 9.03 22.36 0.20 -2.57 16 28 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.45 7.66 -2.38 -0.02 0.44 16 30 H 0.06 0.45 7.66 -2.39 -0.02 0.43 16 31 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.12 2.31 7.65 -2.39 -0.02 2.30 16 34 H 0.13 2.30 7.67 -2.39 -0.02 2.28 16 35 H 0.42 12.28 8.54 -92.71 -0.79 11.49 16 36 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 37 H 0.16 2.09 6.29 -2.91 -0.02 2.07 16 38 H 0.16 1.67 6.29 -2.91 -0.02 1.65 16 Total: -1.00 -71.74 338.31 5.18 -66.55 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.34 Total: 17.40 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: 4.24 Total: 23.66 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -2.02 Total: -76.52 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -1.46 Total: -45.18 kcal Atomic # 9 Polarization: -29.43 SS G_CDS: 2.05 Total: -27.38 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -71.74 5.18 -66.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928817191.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.747 kcal (2) G-P(sol) polarization free energy of solvation -71.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds