Wall clock time and date at job start Tue Mar 31 2020 18:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47393 * 2 1 4 4 C 1.53010 * 109.46830 * 240.00338 * 2 1 3 5 5 N 1.46494 * 109.46988 * 185.00128 * 4 2 1 6 6 C 1.46497 * 120.00314 * 269.99680 * 5 4 2 7 7 C 1.34782 * 120.00205 * 90.00072 * 5 4 2 8 8 O 1.21694 * 119.99734 * 0.28609 * 7 5 4 9 9 C 1.46670 * 119.99936 * 180.28811 * 7 5 4 10 10 C 1.37873 * 126.22924 * 189.39757 * 9 7 5 11 11 C 1.39843 * 107.08555 * 179.84658 * 10 9 7 12 12 S 1.76202 * 126.06919 * 180.15607 * 11 10 9 13 13 O 1.42101 * 106.40041 * 270.28034 * 12 11 10 14 14 O 1.42101 * 106.39958 * 43.20342 * 12 11 10 15 15 F 1.61002 * 107.21515 * 156.74165 * 12 11 10 16 16 C 1.35455 * 107.85967 * 0.41795 * 11 10 9 17 17 N 1.35531 * 108.87373 * 359.73978 * 16 11 10 18 18 H 0.97006 * 125.67682 * 179.97438 * 17 16 11 19 19 N 1.46497 * 109.47413 * 120.00645 * 2 1 3 20 20 C 1.36938 * 119.99472 * 274.99854 * 19 2 1 21 21 H 1.07998 * 120.00369 * 359.97438 * 20 19 2 22 22 C 1.38821 * 119.99842 * 179.97438 * 20 19 2 23 23 N 1.31620 * 119.99798 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00057 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.47203 * 90.00224 * 24 22 20 26 26 H 1.48500 * 109.47349 * 210.00181 * 24 22 20 27 27 H 1.48506 * 109.47462 * 330.00375 * 24 22 20 28 28 H 1.08992 * 109.47378 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46628 * 300.00229 * 1 2 3 30 30 H 1.09001 * 109.47146 * 59.99481 * 1 2 3 31 31 H 1.09004 * 109.46835 * 305.00123 * 4 2 1 32 32 H 1.09001 * 109.46969 * 64.99916 * 4 2 1 33 33 H 1.08996 * 109.47274 * 96.23273 * 6 5 4 34 34 H 1.08996 * 109.47632 * 216.23957 * 6 5 4 35 35 H 1.09009 * 109.46721 * 336.24164 * 6 5 4 36 36 H 1.08004 * 126.46215 * 359.97438 * 10 9 7 37 37 H 1.08007 * 125.56055 * 179.76198 * 16 11 10 38 38 H 0.96996 * 120.00463 * 94.99137 * 19 2 1 39 39 H 0.96996 * 119.99682 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5000 -0.8264 -1.1907 6 6 4.3343 0.2339 -1.7614 7 6 4.0757 -1.8988 -0.6118 8 8 3.3827 -2.7822 -0.1425 9 6 5.5374 -2.0010 -0.5475 10 6 6.2604 -3.1075 -0.1554 11 6 7.6138 -2.7679 -0.2478 12 16 8.9756 -3.8194 0.1327 13 8 9.2595 -3.6251 1.5114 14 8 8.6703 -5.0895 -0.4267 15 9 10.2500 -3.2604 -0.6771 16 6 7.6920 -1.4852 -0.6762 17 7 6.4372 -1.0079 -0.8619 18 1 6.2108 -0.1148 -1.1656 19 7 2.0184 -0.6907 1.1960 20 6 2.1492 -0.0076 2.3756 21 1 1.8928 1.0404 2.4241 22 6 2.6115 -0.6622 3.5092 23 7 2.9236 -1.9395 3.4502 24 14 2.7906 0.2697 5.1181 25 1 1.5228 0.1795 5.8862 26 1 3.8949 -0.3241 5.9139 27 1 3.0965 1.6948 4.8334 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6053 -1.7198 -1.2953 32 1 1.7516 -0.1582 -2.1371 33 1 4.6318 0.9259 -0.9735 34 1 5.2233 -0.2064 -2.2129 35 1 3.7685 0.7715 -2.5224 36 1 5.8576 -4.0583 0.1613 37 1 8.6052 -0.9332 -0.8428 38 1 2.2490 -1.6319 1.1525 39 1 3.2470 -2.3967 4.2422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283680336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:33 Heat of formation + Delta-G solvation = -75.484727 kcal Electronic energy + Delta-G solvation = -27273.980240 eV Core-core repulsion = 23067.715272 eV Total energy + Delta-G solvation = -4206.264967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.099 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -48.28612 -41.71359 -39.13250 -37.55406 -36.27367 -36.11353 -34.69938 -32.22089 -31.51856 -29.78901 -28.64653 -27.42090 -25.89854 -23.67149 -22.50043 -22.27110 -20.53404 -20.09491 -19.76373 -18.13907 -17.69625 -17.15203 -16.81192 -16.65738 -16.00206 -15.79998 -15.49023 -14.71862 -14.54931 -14.44825 -14.19091 -13.90223 -13.68182 -13.48258 -13.18654 -12.92512 -12.84888 -12.78752 -12.47700 -12.45867 -12.35287 -12.25595 -11.97047 -11.61282 -11.45851 -11.27782 -10.82085 -10.68053 -10.46132 -10.05744 -9.78227 -9.71302 -9.53331 -8.86634 -8.59992 -8.30708 -6.85378 -5.63801 -2.94732 -0.15198 1.36480 1.91531 2.68632 2.98027 3.13917 3.23361 3.45697 3.49807 3.53662 3.60896 4.32875 4.48843 4.53880 4.64524 4.72501 4.85977 5.10012 5.26712 5.33018 5.47515 5.60259 5.65436 5.69957 5.92913 5.98312 6.15888 6.21207 6.27935 6.48272 6.60008 6.71219 6.81317 6.98732 7.07748 7.54878 7.74752 8.45391 8.55416 9.64833 10.25986 10.63761 11.56172 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.004085 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.532484 B = 6853.504474 C = 8245.665662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 H 0.042 0.958 4 C 0.111 3.889 5 N -0.607 5.607 6 C 0.061 3.939 7 C 0.594 3.406 8 O -0.491 6.491 9 C -0.022 4.022 10 C -0.017 4.017 11 C -0.760 4.760 12 S 2.697 3.303 13 O -0.925 6.925 14 O -0.929 6.929 15 F -0.480 7.480 16 C 0.116 3.884 17 N -0.524 5.524 18 H 0.428 0.572 19 N -0.722 5.722 20 C -0.247 4.247 21 H 0.064 0.936 22 C -0.009 4.009 23 N -0.916 5.916 24 Si 0.899 3.101 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.285 1.285 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.167 0.833 37 H 0.188 0.812 38 H 0.398 0.602 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.016 3.958 -16.278 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.060 0.940 4 C -0.012 4.012 5 N -0.340 5.340 6 C -0.083 4.083 7 C 0.381 3.619 8 O -0.363 6.363 9 C -0.134 4.134 10 C -0.042 4.042 11 C -0.856 4.856 12 S 2.786 3.214 13 O -0.924 6.924 14 O -0.928 6.928 15 F -0.479 7.479 16 C -0.028 4.028 17 N -0.126 5.126 18 H 0.276 0.724 19 N -0.368 5.368 20 C -0.378 4.378 21 H 0.082 0.918 22 C -0.206 4.206 23 N -0.563 5.563 24 Si 0.730 3.270 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.211 1.211 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.184 0.816 37 H 0.205 0.795 38 H 0.237 0.763 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.055 3.296 -15.782 19.549 hybrid contribution -0.438 1.447 0.777 1.700 sum 10.617 4.743 -15.005 18.984 Atomic orbital electron populations 1.22418 0.98978 1.01120 0.99992 1.20641 0.92199 0.95439 0.87466 0.93989 1.21959 0.78050 1.02603 0.98567 1.47432 1.07247 1.20400 1.58968 1.22100 0.95779 0.91468 0.98949 1.16738 0.84659 0.82378 0.78105 1.90883 1.61972 1.39369 1.44091 1.20779 0.90300 0.90073 1.12293 1.20740 0.88433 0.98682 0.96322 1.30406 1.15300 1.10628 1.29223 1.03079 0.71305 0.73694 0.73360 1.93777 1.83774 1.85477 1.29346 1.93735 1.83499 1.36781 1.78762 1.93645 1.72638 1.93193 1.88451 1.21797 0.89415 0.93080 0.98534 1.43539 1.05926 1.14359 1.48734 0.72401 1.42718 1.77727 1.11731 1.04652 1.19143 1.37398 0.93603 0.87692 0.91801 1.24755 1.02243 0.95907 0.97725 1.69720 1.49776 1.08287 1.28475 0.86333 0.77348 0.78615 0.84659 1.21789 1.21771 1.21112 0.93242 0.92555 0.94617 0.89797 0.90769 0.92080 0.91777 0.89706 0.81588 0.79545 0.76343 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.49 37.16 0.35 -2.54 16 2 C 0.15 2.97 3.20 -67.93 -0.22 2.76 16 3 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16 4 C 0.11 1.74 5.18 -4.04 -0.02 1.72 16 5 N -0.61 -9.28 2.77 -183.13 -0.51 -9.79 16 6 C 0.06 0.59 8.92 59.85 0.53 1.13 16 7 C 0.59 11.17 6.93 -12.85 -0.09 11.08 16 8 O -0.49 -11.40 14.23 5.19 0.07 -11.33 16 9 C -0.02 -0.35 6.65 -81.98 -0.55 -0.90 16 10 C -0.02 -0.27 10.63 -39.11 -0.42 -0.69 16 11 C -0.76 -9.41 6.09 -39.97 -0.24 -9.65 16 12 S 2.70 30.14 6.95 -107.50 -0.75 29.39 16 13 O -0.93 -13.54 18.04 -57.17 -1.03 -14.57 16 14 O -0.93 -12.81 18.04 -57.17 -1.03 -13.85 16 15 F -0.48 -4.16 17.89 2.25 0.04 -4.12 16 16 C 0.12 1.11 11.81 -16.91 -0.20 0.91 16 17 N -0.52 -5.83 5.05 -9.39 -0.05 -5.88 16 18 H 0.43 3.41 4.91 -40.82 -0.20 3.21 16 19 N -0.72 -18.42 4.52 -53.42 -0.24 -18.66 16 20 C -0.25 -6.96 9.93 -15.06 -0.15 -7.11 16 21 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 23 N -0.92 -28.79 13.06 55.49 0.72 -28.07 16 24 Si 0.90 22.97 29.55 -169.99 -5.02 17.94 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.45 7.42 -51.93 -0.39 1.07 16 32 H 0.07 0.85 7.85 -51.93 -0.41 0.45 16 33 H 0.06 0.60 7.72 -51.93 -0.40 0.20 16 34 H 0.06 0.48 5.20 -51.93 -0.27 0.21 16 35 H 0.08 0.60 7.82 -51.92 -0.41 0.19 16 36 H 0.17 2.68 8.06 -52.48 -0.42 2.26 16 37 H 0.19 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.40 11.13 5.03 -40.82 -0.21 10.93 16 39 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -40.88 346.46 -8.02 -48.89 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.35 Total: 8.48 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -1.09 Total: -3.66 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.07 Total: -62.40 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -1.99 Total: -39.75 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.04 Total: -4.12 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Atomic # 16 Polarization: 30.14 SS G_CDS: -0.75 Total: 29.39 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -40.88 -8.02 -48.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283680336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.593 kcal (2) G-P(sol) polarization free energy of solvation -40.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds