Wall clock time and date at job start Tue Mar 31 2020 17:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31284 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48494 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46780 * 299.99950 * 3 2 1 6 6 H 1.48493 * 109.47151 * 59.99854 * 3 2 1 7 7 C 1.39003 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00346 * 180.02562 * 7 2 1 9 9 N 1.37301 * 119.99972 * 359.72316 * 7 2 1 10 10 C 1.36438 * 126.05650 * 180.27942 * 9 7 2 11 11 C 1.35786 * 107.49832 * 180.02562 * 10 9 7 12 12 N 1.40291 * 126.10012 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99887 * 179.97438 * 12 11 10 14 14 O 1.21398 * 120.00406 * 0.02562 * 13 12 11 15 15 C 1.49310 * 119.99789 * 180.02562 * 13 12 11 16 16 O 1.21366 * 119.99987 * 0.02562 * 15 13 12 17 17 N 1.34769 * 120.00030 * 180.02562 * 15 13 12 18 18 N 1.40100 * 120.00325 * 179.97438 * 17 15 13 19 19 C 1.39845 * 120.00328 * 180.02562 * 18 17 15 20 20 C 1.38824 * 120.08086 * 359.97438 * 19 18 17 21 21 C 1.38150 * 119.95414 * 179.97438 * 20 19 18 22 22 C 1.38278 * 120.11142 * 0.02562 * 21 20 19 23 23 C 1.38295 * 120.15774 * 359.97438 * 22 21 20 24 24 C 1.38279 * 120.04645 * 359.74976 * 23 22 21 25 25 F 1.35103 * 120.05471 * 180.25104 * 24 23 22 26 26 C 1.40728 * 107.79939 * 359.97438 * 11 10 9 27 27 N 1.30879 * 108.37461 * 359.71540 * 26 11 10 28 28 H 0.97004 * 119.99619 * 0.02562 * 1 2 3 29 29 H 1.08007 * 126.25154 * 359.97438 * 10 9 7 30 30 H 0.97005 * 119.99998 * 0.02562 * 12 11 10 31 31 H 0.97001 * 120.00407 * 0.02562 * 17 15 13 32 32 H 0.97005 * 119.99801 * 0.02562 * 18 17 15 33 33 H 1.08003 * 120.02328 * 359.95974 * 20 19 18 34 34 H 1.07998 * 119.94923 * 179.97438 * 21 20 19 35 35 H 1.07994 * 119.92051 * 179.97438 * 22 21 20 36 36 H 1.07991 * 119.97032 * 180.02562 * 23 22 21 37 37 H 1.07994 * 125.80716 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7068 1.3464 0.0006 5 1 1.8881 2.3964 -1.2125 6 1 1.8881 2.3964 1.2124 7 6 2.0079 -1.2038 -0.0005 8 1 3.0879 -1.2039 -0.0001 9 7 1.3214 -2.3929 0.0047 10 6 1.8751 -3.6398 0.0102 11 6 0.8572 -4.5385 0.0135 12 7 0.9879 -5.9353 0.0190 13 6 -0.1116 -6.7149 0.0224 14 8 -1.2149 -6.2085 0.0202 15 6 0.0275 -8.2015 0.0288 16 8 1.1305 -8.7078 0.0314 17 7 -1.0718 -8.9812 0.0316 18 7 -0.9414 -10.3761 0.0371 19 6 -2.0821 -11.1850 0.0395 20 6 -3.3446 -10.6077 0.0371 21 6 -4.4697 -11.4093 0.0389 22 6 -4.3406 -12.7861 0.0438 23 6 -3.0852 -13.3661 0.0462 24 6 -1.9546 -12.5700 0.0386 25 9 -0.7281 -13.1365 0.0359 26 6 -0.3521 -3.8188 0.0106 27 7 -0.0714 -2.5405 0.0118 28 1 -0.4850 0.8401 -0.0004 29 1 2.9304 -3.8700 0.0109 30 1 1.8695 -6.3400 0.0211 31 1 -1.9534 -8.5766 0.0292 32 1 -0.0598 -10.7808 0.0392 33 1 -3.4472 -9.5325 0.0339 34 1 -5.4518 -10.9601 0.0375 35 1 -5.2222 -13.4098 0.0457 36 1 -2.9878 -14.4416 0.0496 37 1 -1.3430 -4.2483 0.0125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343236419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:38 Heat of formation + Delta-G solvation = 48.356643 kcal Electronic energy + Delta-G solvation = -26343.288343 eV Core-core repulsion = 22039.242340 eV Total energy + Delta-G solvation = -4304.046003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.11736 -40.79989 -39.85276 -39.27903 -38.12757 -36.38379 -34.51397 -33.29158 -32.37483 -30.95148 -30.40359 -28.80211 -28.03838 -25.53740 -24.32167 -23.15318 -22.46972 -21.20930 -20.74168 -19.63409 -19.10246 -18.04194 -17.76550 -17.49412 -16.95024 -16.21047 -16.08650 -15.76773 -15.65915 -15.54358 -15.21744 -14.95656 -14.35383 -14.23473 -14.01534 -13.75634 -13.47056 -13.40139 -13.07919 -13.07413 -12.21277 -11.93870 -11.82083 -11.70723 -11.60807 -11.40972 -11.35225 -10.97531 -10.56710 -10.42548 -9.83929 -9.39665 -9.31171 -9.22087 -8.96016 -8.20752 -7.67780 -6.87830 -6.66679 -4.34479 0.81837 0.93576 1.33455 1.45676 2.86966 2.99760 3.06369 3.14919 3.18496 3.30094 3.60478 3.74751 3.83741 4.03260 4.27123 4.35877 4.43771 4.57497 4.87297 4.91633 4.92278 4.97452 5.23319 5.57286 5.66275 5.86416 6.06692 6.11607 6.14088 6.26085 6.43138 6.63587 6.70577 6.81650 6.89022 7.09024 7.24373 7.67484 7.77380 7.95087 8.08819 8.32861 8.59882 9.23552 9.51854 10.29022 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.036822 B = 0.001924 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.242034 B =14550.157734 C =15300.549152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.046 3.954 3 Si 0.937 3.063 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.321 4.321 8 H 0.120 0.880 9 N -0.137 5.137 10 C -0.075 4.075 11 C -0.073 4.073 12 N -0.575 5.575 13 C 0.496 3.504 14 O -0.520 6.520 15 C 0.512 3.488 16 O -0.526 6.526 17 N -0.494 5.494 18 N -0.536 5.536 19 C 0.190 3.810 20 C -0.174 4.174 21 C -0.072 4.072 22 C -0.149 4.149 23 C -0.101 4.101 24 C 0.028 3.972 25 F -0.141 7.141 26 C -0.024 4.024 27 N -0.260 5.260 28 H 0.276 0.724 29 H 0.150 0.850 30 H 0.411 0.589 31 H 0.436 0.564 32 H 0.439 0.561 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.588 -20.656 0.076 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.172 4.172 3 Si 0.760 3.240 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.453 4.453 8 H 0.137 0.863 9 N 0.097 4.903 10 C -0.227 4.227 11 C -0.179 4.179 12 N -0.217 5.217 13 C 0.275 3.725 14 O -0.398 6.398 15 C 0.293 3.707 16 O -0.401 6.401 17 N -0.243 5.243 18 N -0.263 5.263 19 C 0.086 3.914 20 C -0.198 4.198 21 C -0.091 4.091 22 C -0.170 4.170 23 C -0.120 4.120 24 C 0.003 3.997 25 F -0.120 7.120 26 C -0.200 4.200 27 N -0.091 5.091 28 H 0.087 0.913 29 H 0.168 0.832 30 H 0.246 0.754 31 H 0.280 0.720 32 H 0.283 0.717 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.198 -19.091 0.076 20.072 hybrid contribution 1.438 -0.512 0.006 1.526 sum -4.760 -19.603 0.082 20.172 Atomic orbital electron populations 1.70214 1.06194 1.28153 1.34639 1.25685 0.95756 1.00434 0.95316 0.85724 0.79677 0.79987 0.78563 1.18582 1.19813 1.19826 1.20002 0.91837 0.80405 1.53067 0.86291 1.44595 1.04117 1.03407 1.38171 1.21302 0.97004 0.85148 1.19247 1.17219 0.94751 0.80208 1.25695 1.42035 1.08387 1.04668 1.66608 1.19022 0.85583 0.85426 0.82467 1.90682 1.25259 1.73820 1.50009 1.20543 0.83644 0.88404 0.78087 1.90766 1.25091 1.75258 1.48950 1.44495 1.11071 0.94412 1.74317 1.43198 1.07694 0.92364 1.83074 1.17761 0.87197 0.88034 0.98446 1.20493 0.90011 1.00479 1.08788 1.20999 0.98287 0.93429 0.96369 1.20853 0.96658 0.94926 1.04517 1.20953 0.91014 1.00141 0.99901 1.16972 0.81022 0.88327 1.13391 1.91477 1.40742 1.84955 1.94799 1.24160 0.97905 0.90776 1.07140 1.78283 0.90084 1.14918 1.25788 0.91319 0.83239 0.75383 0.71993 0.71710 0.85113 0.84907 0.85064 0.84431 0.80481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.69 11.81 55.50 0.66 -20.04 16 2 C 0.05 1.15 5.50 -17.50 -0.10 1.05 16 3 Si 0.94 18.33 29.55 -169.99 -5.02 13.30 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.32 -8.20 10.25 -14.82 -0.15 -8.35 16 8 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 9 N -0.14 -3.62 3.73 -11.40 -0.04 -3.66 16 10 C -0.08 -1.71 11.50 -16.38 -0.19 -1.90 16 11 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 12 N -0.57 -10.28 5.45 -10.45 -0.06 -10.34 16 13 C 0.50 8.44 7.85 -11.65 -0.09 8.35 16 14 O -0.52 -9.79 13.62 5.46 0.07 -9.72 16 15 C 0.51 7.46 8.00 -11.65 -0.09 7.36 16 16 O -0.53 -8.37 16.31 5.48 0.09 -8.28 16 17 N -0.49 -5.97 6.21 30.87 0.19 -5.78 16 18 N -0.54 -6.05 6.46 32.46 0.21 -5.84 16 19 C 0.19 1.91 6.73 -83.67 -0.56 1.34 16 20 C -0.17 -1.49 9.48 -39.40 -0.37 -1.87 16 21 C -0.07 -0.49 10.04 -39.60 -0.40 -0.89 16 22 C -0.15 -0.96 10.04 -39.55 -0.40 -1.35 16 23 C -0.10 -0.75 10.02 -39.55 -0.40 -1.15 16 24 C 0.03 0.27 7.31 -39.26 -0.29 -0.02 16 25 F -0.14 -1.49 16.64 2.25 0.04 -1.46 16 26 C -0.02 -0.60 10.85 -17.02 -0.18 -0.78 16 27 N -0.26 -7.26 10.39 30.81 0.32 -6.94 16 28 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.15 2.84 8.06 -52.48 -0.42 2.41 16 30 H 0.41 6.29 8.29 -40.82 -0.34 5.95 16 31 H 0.44 4.65 6.08 -182.60 -1.11 3.54 16 32 H 0.44 5.10 7.49 -182.59 -1.37 3.73 16 33 H 0.13 1.00 6.21 -52.48 -0.33 0.67 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 36 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.18 4.25 5.92 -52.49 -0.31 3.94 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -31.78 338.31 -6.93 -38.71 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -4.69 Total: 15.34 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -3.80 Total: -0.40 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 1.28 Total: -52.59 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.16 Total: -18.00 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.78 -6.93 -38.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343236419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.071 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds