Wall clock time and date at job start Tue Mar 31 2020 17:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31284 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48494 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46780 * 299.99950 * 3 2 1 6 6 H 1.48493 * 109.47151 * 59.99854 * 3 2 1 7 7 C 1.39003 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00346 * 180.02562 * 7 2 1 9 9 N 1.37301 * 119.99972 * 359.72316 * 7 2 1 10 10 C 1.36438 * 126.05650 * 180.27942 * 9 7 2 11 11 C 1.35786 * 107.49832 * 180.02562 * 10 9 7 12 12 N 1.40291 * 126.10012 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99887 * 179.97438 * 12 11 10 14 14 O 1.21398 * 120.00406 * 0.02562 * 13 12 11 15 15 C 1.49310 * 119.99789 * 180.02562 * 13 12 11 16 16 O 1.21366 * 119.99987 * 0.02562 * 15 13 12 17 17 N 1.34769 * 120.00030 * 180.02562 * 15 13 12 18 18 N 1.40100 * 120.00325 * 179.97438 * 17 15 13 19 19 C 1.39845 * 120.00328 * 180.02562 * 18 17 15 20 20 C 1.38824 * 120.08086 * 359.97438 * 19 18 17 21 21 C 1.38150 * 119.95414 * 179.97438 * 20 19 18 22 22 C 1.38278 * 120.11142 * 0.02562 * 21 20 19 23 23 C 1.38295 * 120.15774 * 359.97438 * 22 21 20 24 24 C 1.38279 * 120.04645 * 359.74976 * 23 22 21 25 25 F 1.35103 * 120.05471 * 180.25104 * 24 23 22 26 26 C 1.40728 * 107.79939 * 359.97438 * 11 10 9 27 27 N 1.30879 * 108.37461 * 359.71540 * 26 11 10 28 28 H 0.97004 * 119.99619 * 0.02562 * 1 2 3 29 29 H 1.08007 * 126.25154 * 359.97438 * 10 9 7 30 30 H 0.97005 * 119.99998 * 0.02562 * 12 11 10 31 31 H 0.97001 * 120.00407 * 0.02562 * 17 15 13 32 32 H 0.97005 * 119.99801 * 0.02562 * 18 17 15 33 33 H 1.08003 * 120.02328 * 359.95974 * 20 19 18 34 34 H 1.07998 * 119.94923 * 179.97438 * 21 20 19 35 35 H 1.07994 * 119.92051 * 179.97438 * 22 21 20 36 36 H 1.07991 * 119.97032 * 180.02562 * 23 22 21 37 37 H 1.07994 * 125.80716 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7068 1.3464 0.0006 5 1 1.8881 2.3964 -1.2125 6 1 1.8881 2.3964 1.2124 7 6 2.0079 -1.2038 -0.0005 8 1 3.0879 -1.2039 -0.0001 9 7 1.3214 -2.3929 0.0047 10 6 1.8751 -3.6398 0.0102 11 6 0.8572 -4.5385 0.0135 12 7 0.9879 -5.9353 0.0190 13 6 -0.1116 -6.7149 0.0224 14 8 -1.2149 -6.2085 0.0202 15 6 0.0275 -8.2015 0.0288 16 8 1.1305 -8.7078 0.0314 17 7 -1.0718 -8.9812 0.0316 18 7 -0.9414 -10.3761 0.0371 19 6 -2.0821 -11.1850 0.0395 20 6 -3.3446 -10.6077 0.0371 21 6 -4.4697 -11.4093 0.0389 22 6 -4.3406 -12.7861 0.0438 23 6 -3.0852 -13.3661 0.0462 24 6 -1.9546 -12.5700 0.0386 25 9 -0.7281 -13.1365 0.0359 26 6 -0.3521 -3.8188 0.0106 27 7 -0.0714 -2.5405 0.0118 28 1 -0.4850 0.8401 -0.0004 29 1 2.9304 -3.8700 0.0109 30 1 1.8695 -6.3400 0.0211 31 1 -1.9534 -8.5766 0.0292 32 1 -0.0598 -10.7808 0.0392 33 1 -3.4472 -9.5325 0.0339 34 1 -5.4518 -10.9601 0.0375 35 1 -5.2222 -13.4098 0.0457 36 1 -2.9878 -14.4416 0.0496 37 1 -1.3430 -4.2483 0.0125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343236419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:37 Heat of formation + Delta-G solvation = 26.152143 kcal Electronic energy + Delta-G solvation = -26344.251202 eV Core-core repulsion = 22039.242340 eV Total energy + Delta-G solvation = -4305.008862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.86382 -42.16735 -41.36245 -40.24592 -39.45090 -37.35189 -36.09665 -35.04203 -33.29425 -32.30644 -31.55773 -30.04114 -29.36917 -27.19996 -25.68807 -23.96602 -23.24916 -22.90283 -22.02391 -21.32831 -20.30922 -19.33655 -19.01702 -18.52757 -17.80169 -17.43837 -17.31877 -17.21438 -16.75721 -16.67015 -16.50810 -15.78101 -15.68370 -15.56271 -15.30645 -14.97236 -14.88197 -14.70089 -14.14552 -14.10656 -13.53018 -13.40895 -13.00161 -12.95143 -12.75106 -12.71669 -12.65252 -12.18990 -12.03814 -12.03008 -11.10315 -10.90153 -10.79614 -10.67137 -10.15360 -9.84651 -8.66834 -8.49770 -8.47803 -6.27490 0.02376 0.20562 0.29326 0.43078 1.27099 1.41149 1.59814 1.68294 1.88292 1.94593 2.15883 2.47325 2.68979 2.72467 3.06993 3.07803 3.19096 3.40057 3.75458 4.03032 4.36837 4.38455 4.40925 4.50466 4.55069 4.91070 4.97130 4.98323 5.03156 5.14795 5.23068 5.27812 5.35684 5.53901 5.58346 5.90721 5.94474 6.19441 6.32107 6.41214 6.65524 6.78403 6.96506 7.39835 7.61691 8.49505 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.036822 B = 0.001924 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.242034 B =14550.157734 C =15300.549152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C -0.005 4.005 3 Si 1.019 2.981 4 H -0.242 1.242 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.352 4.352 8 H 0.142 0.858 9 N -0.163 5.163 10 C -0.072 4.072 11 C -0.058 4.058 12 N -0.574 5.574 13 C 0.504 3.496 14 O -0.536 6.536 15 C 0.521 3.479 16 O -0.539 6.539 17 N -0.478 5.478 18 N -0.541 5.541 19 C 0.167 3.833 20 C -0.184 4.184 21 C -0.072 4.072 22 C -0.139 4.139 23 C -0.102 4.102 24 C 0.010 3.990 25 F -0.152 7.152 26 C -0.045 4.045 27 N -0.308 5.308 28 H 0.278 0.722 29 H 0.189 0.811 30 H 0.425 0.575 31 H 0.442 0.558 32 H 0.436 0.564 33 H 0.135 0.865 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.521 -22.289 0.083 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.165 1.165 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.483 4.483 8 H 0.159 0.841 9 N 0.069 4.931 10 C -0.223 4.223 11 C -0.165 4.165 12 N -0.219 5.219 13 C 0.283 3.717 14 O -0.414 6.414 15 C 0.301 3.699 16 O -0.415 6.415 17 N -0.225 5.225 18 N -0.271 5.271 19 C 0.065 3.935 20 C -0.206 4.206 21 C -0.090 4.090 22 C -0.158 4.158 23 C -0.121 4.121 24 C -0.014 4.014 25 F -0.131 7.131 26 C -0.220 4.220 27 N -0.139 5.139 28 H 0.088 0.912 29 H 0.206 0.794 30 H 0.263 0.737 31 H 0.288 0.712 32 H 0.279 0.721 33 H 0.153 0.847 34 H 0.176 0.824 35 H 0.180 0.820 36 H 0.176 0.824 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.161 -20.792 0.083 21.686 hybrid contribution 1.240 -0.327 0.005 1.282 sum -4.922 -21.119 0.088 21.685 Atomic orbital electron populations 1.70374 1.08339 1.29225 1.36805 1.26868 0.96511 1.04278 0.94065 0.84534 0.79047 0.74415 0.78229 1.16456 1.19734 1.19764 1.20693 0.93048 0.80766 1.53797 0.84071 1.44855 1.03768 1.04752 1.39710 1.22007 0.98881 0.84144 1.17249 1.17236 0.93564 0.82113 1.23560 1.41930 1.09571 1.03011 1.67380 1.19452 0.84936 0.86606 0.80674 1.90674 1.26029 1.74646 1.50068 1.19784 0.84033 0.87158 0.78943 1.90769 1.25578 1.75016 1.50163 1.44276 1.10631 0.95239 1.72395 1.43239 1.08191 0.91381 1.84250 1.17992 0.87234 0.88171 1.00098 1.20728 0.90083 1.01093 1.08741 1.21375 0.98824 0.93739 0.95090 1.21277 0.97255 0.95112 1.02206 1.21291 0.90688 1.01143 0.99027 1.17302 0.81329 0.88454 1.14345 1.91446 1.41559 1.85069 1.94997 1.24299 0.98978 0.90724 1.08032 1.78175 0.91813 1.16506 1.27399 0.91215 0.79443 0.73695 0.71196 0.72070 0.84707 0.82381 0.81993 0.82408 0.80413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.88 11.81 21.66 0.26 -45.63 16 2 C 0.00 -0.25 5.50 84.96 0.47 0.21 16 3 Si 1.02 37.56 29.55 68.60 2.03 39.58 16 4 H -0.24 -8.01 7.11 99.48 0.71 -7.30 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 6 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.35 -18.10 10.25 84.02 0.86 -17.24 16 8 H 0.14 6.30 7.83 -2.91 -0.02 6.28 16 9 N -0.16 -8.77 3.73 -189.97 -0.71 -9.48 16 10 C -0.07 -3.23 11.50 83.41 0.96 -2.27 16 11 C -0.06 -2.59 6.90 37.83 0.26 -2.33 16 12 N -0.57 -20.07 5.45 -305.33 -1.66 -21.74 16 13 C 0.50 16.86 7.85 87.23 0.69 17.55 16 14 O -0.54 -20.17 13.62 -3.39 -0.05 -20.22 16 15 C 0.52 14.76 8.00 87.23 0.70 15.46 16 16 O -0.54 -16.66 16.31 -3.30 -0.05 -16.71 16 17 N -0.48 -11.21 6.21 -174.61 -1.08 -12.29 16 18 N -0.54 -11.94 6.46 -51.21 -0.33 -12.27 16 19 C 0.17 3.20 6.73 38.20 0.26 3.46 16 20 C -0.18 -2.85 9.48 22.39 0.21 -2.64 16 21 C -0.07 -0.78 10.04 22.26 0.22 -0.56 16 22 C -0.14 -1.31 10.04 22.29 0.22 -1.08 16 23 C -0.10 -1.28 10.02 22.29 0.22 -1.06 16 24 C 0.01 0.19 7.31 22.48 0.16 0.35 16 25 F -0.15 -3.16 16.64 44.97 0.75 -2.41 16 26 C -0.04 -2.29 10.85 85.44 0.93 -1.37 16 27 N -0.31 -17.78 10.39 -56.43 -0.59 -18.37 16 28 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.19 6.70 8.06 -2.91 -0.02 6.68 16 30 H 0.43 12.41 8.29 -92.70 -0.77 11.64 16 31 H 0.44 9.10 6.08 -213.32 -1.30 7.81 16 32 H 0.44 10.06 7.49 -213.31 -1.60 8.46 16 33 H 0.14 1.89 6.21 -2.91 -0.02 1.87 16 34 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 35 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 36 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 37 H 0.18 8.84 5.92 -2.91 -0.02 8.82 16 Total: -1.00 -71.28 338.31 2.26 -69.03 By element: Atomic # 1 Polarization: 44.47 SS G_CDS: -2.46 Total: 42.01 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 6.16 Total: 8.50 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -4.12 Total: -119.77 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -0.10 Total: -36.93 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.75 Total: -2.41 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.58 kcal Total: -71.28 2.26 -69.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343236419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.177 kcal (2) G-P(sol) polarization free energy of solvation -71.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds