Wall clock time and date at job start Tue Mar 31 2020 18:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46805 * 2 1 4 4 O 1.45199 * 109.47125 * 120.00276 * 2 1 3 5 5 C 1.34234 * 116.99947 * 269.99997 * 4 2 1 6 6 O 1.20830 * 119.99848 * 359.97438 * 5 4 2 7 7 C 1.50694 * 119.99881 * 180.02562 * 5 4 2 8 8 C 1.53001 * 109.47168 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47168 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00563 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.50704 * 109.46942 * 240.00391 * 2 1 3 18 18 O 1.21279 * 119.99591 * 245.00202 * 17 2 1 19 19 N 1.34774 * 120.00238 * 64.99855 * 17 2 1 20 20 C 1.46497 * 120.00293 * 179.97438 * 19 17 2 21 21 H 1.09000 * 109.63834 * 325.43220 * 20 19 17 22 22 C 1.53875 * 109.64483 * 85.72257 * 20 19 17 23 23 C 1.55046 * 106.62248 * 167.03439 * 22 20 19 24 24 S 1.83289 * 102.56803 * 317.56906 * 23 22 20 25 25 O 1.42097 * 109.35359 * 269.81269 * 24 23 22 26 26 O 1.42105 * 109.47468 * 136.64351 * 24 23 22 27 27 C 1.54161 * 109.64747 * 205.00203 * 20 19 17 28 28 H 1.09003 * 109.46899 * 299.99713 * 1 2 3 29 29 H 1.09004 * 109.46791 * 59.99821 * 1 2 3 30 30 H 1.08993 * 109.47098 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47054 * 60.00063 * 7 5 4 32 32 H 1.08998 * 109.47224 * 299.99551 * 7 5 4 33 33 H 1.09007 * 109.46922 * 59.99702 * 8 7 5 34 34 H 1.09003 * 109.46836 * 300.00457 * 8 7 5 35 35 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 36 36 H 0.97008 * 120.00012 * 359.97438 * 19 17 2 37 37 H 1.08995 * 110.03001 * 286.32441 * 22 20 19 38 38 H 1.09000 * 110.02836 * 47.75154 * 22 20 19 39 39 H 1.09003 * 110.79251 * 199.29792 * 23 22 20 40 40 H 1.09002 * 110.79079 * 75.83376 * 23 22 20 41 41 H 1.08998 * 110.31890 * 331.14050 * 27 20 19 42 42 H 1.08997 * 110.32147 * 93.23511 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2172 0.0639 2.2811 6 8 1.9983 1.2518 2.2504 7 6 2.7194 -0.5771 3.5491 8 6 2.8645 0.4890 4.6368 9 6 3.3661 -0.1522 5.9050 10 1 3.5622 -1.2138 5.9324 11 6 3.5746 0.6166 7.0304 12 7 3.3363 1.9096 6.9970 13 14 4.1957 -0.1783 8.6026 14 1 3.0401 -0.6218 9.4230 15 1 5.0414 -1.3510 8.2637 16 1 4.9994 0.8061 9.3709 17 6 2.0324 -0.7103 -1.2306 18 8 2.6530 -1.7466 -1.1216 19 7 1.7919 -0.1941 -2.4521 20 6 2.2807 -0.8843 -3.6482 21 1 3.2375 -1.3594 -3.4318 22 6 1.2618 -1.9530 -4.0815 23 6 1.6695 -2.4018 -5.5085 24 16 2.0879 -0.8134 -6.3218 25 8 0.9244 -0.2791 -6.9382 26 8 3.2815 -0.9680 -7.0773 27 6 2.4532 0.1289 -4.7972 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.6885 -1.0401 3.3630 32 1 2.0106 -1.3373 3.8773 33 1 1.8955 0.9524 4.8230 34 1 3.5735 1.2490 4.3083 35 1 3.4826 2.4503 7.7889 36 1 1.2952 0.6346 -2.5392 37 1 1.2980 -2.8018 -3.3986 38 1 0.2583 -1.5277 -4.0964 39 1 0.8351 -2.8875 -6.0144 40 1 2.5382 -3.0593 -5.4739 41 1 1.7492 0.9532 -4.6838 42 1 3.4758 0.5057 -4.8192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347436064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:06 Heat of formation + Delta-G solvation = -230.243139 kcal Electronic energy + Delta-G solvation = -26042.369731 eV Core-core repulsion = 21920.561489 eV Total energy + Delta-G solvation = -4121.808242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.92865 -40.83854 -38.20638 -38.06069 -37.42235 -37.07105 -35.65662 -34.54574 -33.28593 -32.45793 -30.47156 -28.11232 -26.49747 -25.46697 -24.13084 -22.54018 -21.74624 -21.36324 -19.84736 -19.24256 -18.83297 -18.30226 -17.86448 -17.64025 -17.38797 -16.88325 -16.69586 -16.49378 -16.39102 -16.15001 -15.22169 -15.12951 -15.03463 -14.72767 -14.37704 -14.28067 -13.94085 -13.61797 -13.42746 -13.36606 -13.25052 -13.24560 -13.14796 -13.07478 -12.84420 -12.71383 -12.51920 -12.31044 -12.02962 -11.94502 -11.90110 -11.75199 -11.49507 -11.36304 -11.29378 -10.90410 -10.57552 -10.37276 -8.20433 -6.33621 -0.98113 1.11228 1.23772 1.32180 1.43922 1.45494 1.56414 1.58982 2.20796 2.43790 2.57807 3.04167 3.13477 3.22233 3.40668 3.61848 3.66128 3.74021 3.85672 3.90309 3.91205 4.00583 4.39614 4.43110 4.48409 4.60171 4.61089 4.63657 4.78208 4.86531 4.90168 4.99294 5.06722 5.19767 5.28779 5.46746 5.55172 5.80254 6.13203 6.26129 6.73137 6.84664 6.98103 7.36368 8.91981 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.037248 B = 0.001813 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.541307 B =15436.567527 C =15564.226958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.053 3.947 3 H 0.112 0.888 4 O -0.341 6.341 5 C 0.469 3.531 6 O -0.533 6.533 7 C -0.096 4.096 8 C 0.041 3.959 9 C -0.545 4.545 10 H 0.075 0.925 11 C -0.003 4.003 12 N -0.934 5.934 13 Si 0.973 3.027 14 H -0.271 1.271 15 H -0.258 1.258 16 H -0.285 1.285 17 C 0.528 3.472 18 O -0.551 6.551 19 N -0.699 5.699 20 C 0.147 3.853 21 H 0.104 0.896 22 C -0.139 4.139 23 C -0.565 4.565 24 S 2.407 3.593 25 O -0.968 6.968 26 O -0.978 6.978 27 C -0.595 4.595 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.116 0.884 33 H -0.006 1.006 34 H -0.009 1.009 35 H 0.264 0.736 36 H 0.423 0.577 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.170 0.830 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.084 -7.125 -27.800 29.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.005 4.005 3 H 0.130 0.870 4 O -0.257 6.257 5 C 0.314 3.686 6 O -0.422 6.422 7 C -0.133 4.133 8 C 0.003 3.997 9 C -0.583 4.583 10 H 0.093 0.907 11 C -0.201 4.201 12 N -0.573 5.573 13 Si 0.797 3.203 14 H -0.196 1.196 15 H -0.182 1.182 16 H -0.211 1.211 17 C 0.313 3.687 18 O -0.428 6.428 19 N -0.355 5.355 20 C 0.042 3.958 21 H 0.122 0.878 22 C -0.178 4.178 23 C -0.697 4.697 24 S 2.594 3.406 25 O -0.965 6.965 26 O -0.975 6.975 27 C -0.725 4.725 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.013 0.987 34 H 0.010 0.990 35 H 0.073 0.927 36 H 0.262 0.738 37 H 0.117 0.883 38 H 0.130 0.870 39 H 0.179 0.821 40 H 0.172 0.828 41 H 0.188 0.812 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.674 -7.064 -28.663 30.266 hybrid contribution 0.153 0.486 1.708 1.782 sum -6.521 -6.578 -26.955 28.502 Atomic orbital electron populations 1.22188 0.89500 1.04587 1.05412 1.22742 0.97967 0.97692 0.82126 0.87007 1.86666 1.77262 1.41928 1.19870 1.24495 0.72958 0.85745 0.85405 1.90615 1.49232 1.18004 1.84370 1.21533 1.03674 1.00566 0.87567 1.18789 0.95697 0.93050 0.92123 1.21638 1.44668 0.95634 0.96361 0.90685 1.26068 0.95598 0.95307 1.03122 1.70145 1.49737 1.06813 1.30645 0.85331 0.78504 0.78289 0.78194 1.19647 1.18229 1.21115 1.20164 0.78934 0.84795 0.84788 1.90747 1.40583 1.24536 1.86892 1.45693 1.57963 1.28405 1.03437 1.21446 0.99842 0.91153 0.83399 0.87757 1.22715 1.00786 0.99907 0.94438 1.30499 1.13760 1.18733 1.06722 1.08380 0.74061 0.80287 0.77902 1.93596 1.49937 1.78349 1.74660 1.93588 1.48614 1.86017 1.69259 1.30834 1.15002 1.11575 1.15120 0.91852 0.86281 0.90509 0.87129 0.86604 0.98715 0.99018 0.92721 0.73762 0.88301 0.86997 0.82078 0.82834 0.81245 0.82173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.50 71.98 0.68 -1.92 16 2 C 0.05 1.21 2.97 29.85 0.09 1.30 16 3 H 0.11 2.54 7.16 -2.39 -0.02 2.52 16 4 O -0.34 -10.96 9.42 -45.12 -0.43 -11.38 16 5 C 0.47 17.87 7.93 71.23 0.56 18.43 16 6 O -0.53 -23.04 15.20 21.95 0.33 -22.70 16 7 C -0.10 -3.87 5.75 29.85 0.17 -3.70 16 8 C 0.04 2.17 4.26 29.85 0.13 2.29 16 9 C -0.55 -30.27 9.11 25.60 0.23 -30.03 16 10 H 0.08 3.84 7.74 -2.91 -0.02 3.81 16 11 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 12 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 13 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 15 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 16 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 17 C 0.53 10.63 7.16 87.66 0.63 11.25 16 18 O -0.55 -15.74 16.17 15.72 0.25 -15.48 16 19 N -0.70 -6.91 5.06 -439.28 -2.22 -9.13 16 20 C 0.15 1.14 2.88 45.68 0.13 1.27 16 21 H 0.10 1.09 7.57 -2.39 -0.02 1.07 16 22 C -0.14 -0.75 6.08 31.59 0.19 -0.56 16 23 C -0.56 -1.90 7.31 72.68 0.53 -1.37 16 24 S 2.41 19.47 6.10 -56.49 -0.34 19.12 16 25 O -0.97 -14.75 18.15 -127.47 -2.31 -17.06 16 26 O -0.98 -16.63 18.15 -127.47 -2.31 -18.95 16 27 C -0.60 -2.07 6.92 72.38 0.50 -1.57 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.12 0.88 7.92 -2.39 -0.02 0.86 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 32 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 33 H -0.01 -0.33 8.10 -2.38 -0.02 -0.35 16 34 H -0.01 -0.51 8.10 -2.39 -0.02 -0.53 16 35 H 0.26 15.17 8.31 -92.71 -0.77 14.39 16 36 H 0.42 1.32 8.15 -92.70 -0.76 0.57 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.16 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.17 -0.19 7.77 -2.39 -0.02 -0.21 16 42 H 0.16 0.32 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -89.83 371.82 -0.12 -89.95 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: 0.29 Total: 1.41 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 4.32 Total: -4.31 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: -1.94 Total: -66.10 kcal Atomic # 8 Polarization: -81.11 SS G_CDS: -4.46 Total: -85.58 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 19.47 SS G_CDS: -0.34 Total: 19.12 kcal Total: -89.83 -0.12 -89.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347436064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.291 kcal (2) G-P(sol) polarization free energy of solvation -89.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds