Wall clock time and date at job start Tue Mar 31 2020 17:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34220 * 117.00095 * 2 1 4 4 O 1.20825 * 120.00634 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99715 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.46994 * 180.02562 * 5 3 2 7 7 C 1.36933 * 119.99867 * 269.72522 * 6 5 3 8 8 H 1.08003 * 120.00024 * 5.74082 * 7 6 5 9 9 C 1.38810 * 120.00179 * 185.73968 * 7 6 5 10 10 N 1.31618 * 119.99939 * 355.00116 * 9 7 6 11 11 Si 1.86795 * 120.00191 * 174.99499 * 9 7 6 12 12 H 1.48502 * 109.47228 * 90.00247 * 11 9 7 13 13 H 1.48504 * 109.47283 * 210.00417 * 11 9 7 14 14 H 1.48507 * 109.47208 * 330.00132 * 11 9 7 15 15 C 1.46503 * 120.00055 * 89.99744 * 6 5 3 16 16 C 1.50701 * 109.46808 * 85.44162 * 15 6 5 17 17 C 1.38268 * 119.94602 * 275.01445 * 16 15 6 18 18 C 1.38143 * 120.05205 * 179.72913 * 17 16 15 19 19 C 1.38735 * 119.94723 * 0.56322 * 18 17 16 20 20 O 1.35899 * 120.05521 * 179.68334 * 19 18 17 21 21 C 1.42902 * 117.00090 * 0.02671 * 20 19 18 22 22 F 1.39898 * 109.47474 * 59.99827 * 21 20 19 23 23 F 1.39903 * 109.46937 * 179.97438 * 21 20 19 24 24 F 1.39903 * 109.46970 * 299.99726 * 21 20 19 25 25 C 1.38728 * 119.88682 * 359.71167 * 19 18 17 26 26 C 1.38144 * 119.94301 * 359.97438 * 25 19 18 27 27 H 1.08999 * 109.47687 * 179.97438 * 1 2 3 28 28 H 1.09010 * 109.47004 * 299.99766 * 1 2 3 29 29 H 1.09004 * 109.47002 * 59.99158 * 1 2 3 30 30 H 1.08992 * 109.47303 * 60.00351 * 5 3 2 31 31 H 1.09003 * 109.47172 * 300.00116 * 5 3 2 32 32 H 0.97005 * 120.00072 * 179.97438 * 10 9 7 33 33 H 1.08995 * 109.47037 * 205.44308 * 15 6 5 34 34 H 1.08999 * 109.47145 * 325.44351 * 15 6 5 35 35 H 1.08001 * 119.96997 * 359.97438 * 17 16 15 36 36 H 1.08001 * 120.02357 * 180.24709 * 18 17 16 37 37 H 1.08000 * 120.02935 * 179.97438 * 25 19 18 38 38 H 1.08002 * 119.97322 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.1809 3.3353 -1.1854 8 1 3.9431 2.8472 -2.1190 9 6 4.6884 4.6273 -1.1873 10 7 4.8857 5.2585 -0.0493 11 14 5.0915 5.4701 -2.8048 12 1 3.8962 6.2048 -3.2915 13 1 6.2102 6.4251 -2.6001 14 1 5.4886 4.4504 -3.8088 15 6 4.1901 3.3812 1.2693 16 6 5.5919 3.1263 1.7600 17 6 5.8697 1.9886 2.4950 18 6 7.1552 1.7500 2.9412 19 6 8.1654 2.6587 2.6612 20 8 9.4294 2.4293 3.1045 21 6 9.6470 1.2316 3.8529 22 9 9.3180 0.1232 3.0652 23 9 10.9927 1.1539 4.2276 24 9 8.8436 1.2448 4.9981 25 6 7.8828 3.8023 1.9284 26 6 6.5971 4.0332 1.4790 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 3.9557 0.7808 -0.8908 31 1 3.9565 0.7803 0.8891 32 1 5.2406 6.1613 -0.0506 33 1 4.0460 4.4514 1.1206 34 1 3.4750 3.0174 2.0071 35 1 5.0819 1.2840 2.7171 36 1 7.3725 0.8591 3.5118 37 1 8.6674 4.5115 1.7095 38 1 6.3767 4.9231 0.9081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080896154.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:22 Heat of formation + Delta-G solvation = -204.278433 kcal Electronic energy + Delta-G solvation = -29163.585599 eV Core-core repulsion = 24365.602580 eV Total energy + Delta-G solvation = -4797.983019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 4.42 seconds Orbital eigenvalues (eV) -50.32752 -48.07772 -47.90262 -39.77908 -39.60549 -37.59757 -36.06692 -35.11102 -31.89372 -30.49974 -30.16619 -28.25053 -26.44262 -26.16302 -25.03910 -22.58955 -22.24881 -20.96898 -20.00003 -19.19915 -19.02528 -18.71561 -17.34296 -16.95965 -16.35473 -15.95753 -15.77122 -15.19203 -15.11810 -15.01654 -14.68689 -14.48263 -14.38513 -14.23136 -13.99632 -13.98812 -13.69208 -13.61370 -13.30478 -12.98064 -12.82683 -12.76951 -12.53025 -11.72620 -11.67506 -11.39730 -11.08667 -10.99005 -10.85655 -10.47644 -10.29699 -10.25383 -10.22121 -9.83493 -9.62942 -8.90276 -8.32207 -7.68123 -7.19978 -5.71751 -3.46954 1.73210 1.93285 2.03616 2.99540 3.02722 3.22683 3.33037 3.35001 3.39770 3.94322 4.06596 4.27351 4.48282 5.10170 5.16497 5.29916 5.36584 5.37362 5.43362 5.55235 5.74209 5.83637 5.90250 6.01377 6.07370 6.18387 6.32751 6.56109 6.72994 6.84615 6.99140 7.03723 7.32138 7.46680 7.64790 7.72687 7.89620 8.39691 8.54401 9.05962 9.56280 9.88917 10.98421 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.011179 B = 0.003983 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.134468 B = 7028.590259 C = 8920.544103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.416 3.584 4 O -0.492 6.492 5 C 0.153 3.847 6 N -0.560 5.560 7 C -0.210 4.210 8 H 0.080 0.920 9 C -0.016 4.016 10 N -0.908 5.908 11 Si 0.927 3.073 12 H -0.287 1.287 13 H -0.286 1.286 14 H -0.281 1.281 15 C 0.140 3.860 16 C -0.069 4.069 17 C -0.097 4.097 18 C -0.205 4.205 19 C 0.071 3.929 20 O -0.315 6.315 21 C 0.601 3.399 22 F -0.169 7.169 23 F -0.141 7.141 24 F -0.169 7.169 25 C -0.144 4.144 26 C -0.059 4.059 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.256 0.744 33 H 0.183 0.817 34 H 0.011 0.989 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.697 -7.724 5.814 10.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.295 6.295 3 C 0.254 3.746 4 O -0.377 6.377 5 C 0.021 3.979 6 N -0.276 5.276 7 C -0.338 4.338 8 H 0.097 0.903 9 C -0.207 4.207 10 N -0.561 5.561 11 Si 0.757 3.243 12 H -0.214 1.214 13 H -0.212 1.212 14 H -0.207 1.207 15 C 0.016 3.984 16 C -0.072 4.072 17 C -0.116 4.116 18 C -0.224 4.224 19 C 0.030 3.970 20 O -0.236 6.236 21 C 0.510 3.490 22 F -0.151 7.151 23 F -0.123 7.123 24 F -0.152 7.152 25 C -0.163 4.163 26 C -0.077 4.077 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.198 0.802 34 H 0.029 0.971 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 3.678 -7.140 5.745 9.875 hybrid contribution 0.039 -0.279 -0.428 0.513 sum 3.717 -7.419 5.317 9.855 Atomic orbital electron populations 1.23054 0.78745 1.02350 1.01860 1.86612 1.21902 1.35931 1.85028 1.26937 0.94753 0.80753 0.72117 1.90615 1.66842 1.36381 1.43861 1.20577 0.84972 0.89230 1.03126 1.44073 1.73670 1.05818 1.04052 1.19593 1.32368 0.96769 0.85069 0.90250 1.24711 1.01179 0.96961 0.97862 1.68946 1.51917 1.12991 1.22219 0.85859 0.77800 0.79035 0.81628 1.21419 1.21161 1.20692 1.21646 0.86880 1.06825 0.83071 1.20978 1.00129 0.92206 0.93863 1.20971 0.94690 0.97694 0.98239 1.21192 0.94440 0.99917 1.06824 1.18829 0.79701 0.97919 1.00566 1.86382 1.31908 1.37467 1.67816 1.19407 0.74755 0.78373 0.76422 1.93283 1.92294 1.54877 1.74611 1.93261 1.32323 1.95744 1.90954 1.93277 1.73802 1.96059 1.52016 1.20755 0.98918 0.95477 1.01118 1.22973 0.88654 1.02367 0.93685 0.89226 0.92707 0.92651 0.89079 0.89751 0.93040 0.80249 0.97119 0.86854 0.86539 0.86070 0.79468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 101.05 1.07 1.53 16 2 O -0.38 -6.31 10.56 -39.23 -0.41 -6.72 16 3 C 0.42 8.17 8.03 36.01 0.29 8.46 16 4 O -0.49 -11.45 16.18 -18.75 -0.30 -11.75 16 5 C 0.15 2.91 6.28 -5.19 -0.03 2.87 16 6 N -0.56 -12.68 2.00 -175.98 -0.35 -13.03 16 7 C -0.21 -5.15 9.82 -15.06 -0.15 -5.30 16 8 H 0.08 1.92 7.83 -52.48 -0.41 1.51 16 9 C -0.02 -0.40 5.45 -17.43 -0.09 -0.49 16 10 N -0.91 -21.72 5.73 55.49 0.32 -21.41 16 11 Si 0.93 20.04 29.56 -169.99 -5.02 15.02 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 C 0.14 3.12 5.29 -5.19 -0.03 3.09 16 16 C -0.07 -1.42 5.46 -104.60 -0.57 -1.99 16 17 C -0.10 -1.78 9.34 -39.61 -0.37 -2.15 16 18 C -0.21 -3.57 8.26 -39.43 -0.33 -3.90 16 19 C 0.07 1.27 6.48 -39.22 -0.25 1.02 16 20 O -0.32 -5.14 10.37 -19.42 -0.20 -5.34 16 21 C 0.60 8.45 3.42 101.05 0.35 8.79 16 22 F -0.17 -2.39 15.56 2.25 0.04 -2.35 16 23 F -0.14 -1.80 17.53 2.25 0.04 -1.76 16 24 F -0.17 -2.35 15.56 2.25 0.04 -2.31 16 25 C -0.14 -2.67 9.99 -39.43 -0.39 -3.06 16 26 C -0.06 -1.20 9.20 -39.61 -0.36 -1.57 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.09 1.61 8.04 -51.93 -0.42 1.19 16 31 H 0.08 1.43 7.04 -51.93 -0.37 1.06 16 32 H 0.26 5.92 8.08 -40.82 -0.33 5.59 16 33 H 0.18 4.49 4.55 -82.29 -0.37 4.11 16 34 H 0.01 0.23 8.08 -51.93 -0.42 -0.19 16 35 H 0.11 1.87 7.43 -52.49 -0.39 1.48 16 36 H 0.12 1.83 5.10 -52.49 -0.27 1.56 16 37 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 38 H 0.19 4.10 4.54 -52.70 -0.24 3.86 16 LS Contribution 335.11 15.07 5.05 5.05 Total: -1.00 -26.50 335.11 -5.40 -31.90 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -3.70 Total: 5.42 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -0.88 Total: 7.29 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: -0.03 Total: -34.44 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.92 Total: -23.82 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.11 Total: -6.42 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.50 -5.40 -31.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080896154.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.380 kcal (2) G-P(sol) polarization free energy of solvation -26.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.42 seconds