Wall clock time and date at job start Tue Mar 31 2020 17:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34220 * 117.00095 * 2 1 4 4 O 1.20825 * 120.00634 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99715 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.46994 * 180.02562 * 5 3 2 7 7 C 1.36933 * 119.99867 * 269.72522 * 6 5 3 8 8 H 1.08003 * 120.00024 * 5.74082 * 7 6 5 9 9 C 1.38810 * 120.00179 * 185.73968 * 7 6 5 10 10 N 1.31618 * 119.99939 * 355.00116 * 9 7 6 11 11 Si 1.86795 * 120.00191 * 174.99499 * 9 7 6 12 12 H 1.48502 * 109.47228 * 90.00247 * 11 9 7 13 13 H 1.48504 * 109.47283 * 210.00417 * 11 9 7 14 14 H 1.48507 * 109.47208 * 330.00132 * 11 9 7 15 15 C 1.46503 * 120.00055 * 89.99744 * 6 5 3 16 16 C 1.50701 * 109.46808 * 85.44162 * 15 6 5 17 17 C 1.38268 * 119.94602 * 275.01445 * 16 15 6 18 18 C 1.38143 * 120.05205 * 179.72913 * 17 16 15 19 19 C 1.38735 * 119.94723 * 0.56322 * 18 17 16 20 20 O 1.35899 * 120.05521 * 179.68334 * 19 18 17 21 21 C 1.42902 * 117.00090 * 0.02671 * 20 19 18 22 22 F 1.39898 * 109.47474 * 59.99827 * 21 20 19 23 23 F 1.39903 * 109.46937 * 179.97438 * 21 20 19 24 24 F 1.39903 * 109.46970 * 299.99726 * 21 20 19 25 25 C 1.38728 * 119.88682 * 359.71167 * 19 18 17 26 26 C 1.38144 * 119.94301 * 359.97438 * 25 19 18 27 27 H 1.08999 * 109.47687 * 179.97438 * 1 2 3 28 28 H 1.09010 * 109.47004 * 299.99766 * 1 2 3 29 29 H 1.09004 * 109.47002 * 59.99158 * 1 2 3 30 30 H 1.08992 * 109.47303 * 60.00351 * 5 3 2 31 31 H 1.09003 * 109.47172 * 300.00116 * 5 3 2 32 32 H 0.97005 * 120.00072 * 179.97438 * 10 9 7 33 33 H 1.08995 * 109.47037 * 205.44308 * 15 6 5 34 34 H 1.08999 * 109.47145 * 325.44351 * 15 6 5 35 35 H 1.08001 * 119.96997 * 359.97438 * 17 16 15 36 36 H 1.08001 * 120.02357 * 180.24709 * 18 17 16 37 37 H 1.08000 * 120.02935 * 179.97438 * 25 19 18 38 38 H 1.08002 * 119.97322 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.1809 3.3353 -1.1854 8 1 3.9431 2.8472 -2.1190 9 6 4.6884 4.6273 -1.1873 10 7 4.8857 5.2585 -0.0493 11 14 5.0915 5.4701 -2.8048 12 1 3.8962 6.2048 -3.2915 13 1 6.2102 6.4251 -2.6001 14 1 5.4886 4.4504 -3.8088 15 6 4.1901 3.3812 1.2693 16 6 5.5919 3.1263 1.7600 17 6 5.8697 1.9886 2.4950 18 6 7.1552 1.7500 2.9412 19 6 8.1654 2.6587 2.6612 20 8 9.4294 2.4293 3.1045 21 6 9.6470 1.2316 3.8529 22 9 9.3180 0.1232 3.0652 23 9 10.9927 1.1539 4.2276 24 9 8.8436 1.2448 4.9981 25 6 7.8828 3.8023 1.9284 26 6 6.5971 4.0332 1.4790 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 3.9557 0.7808 -0.8908 31 1 3.9565 0.7803 0.8891 32 1 5.2406 6.1613 -0.0506 33 1 4.0460 4.4514 1.1206 34 1 3.4750 3.0174 2.0071 35 1 5.0819 1.2840 2.7171 36 1 7.3725 0.8591 3.5118 37 1 8.6674 4.5115 1.7095 38 1 6.3767 4.9231 0.9081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080896154.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:17 Heat of formation + Delta-G solvation = -216.563148 kcal Electronic energy + Delta-G solvation = -29164.118304 eV Core-core repulsion = 24365.602580 eV Total energy + Delta-G solvation = -4798.515724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 4.33 seconds Orbital eigenvalues (eV) -51.43435 -49.15609 -49.01999 -41.24190 -41.02123 -39.06191 -37.55079 -36.72008 -33.62279 -31.98629 -31.65048 -29.67763 -27.77517 -27.64529 -26.44053 -24.14799 -23.67457 -22.41264 -21.51445 -20.48922 -20.14728 -19.91729 -19.06476 -18.45969 -17.74191 -17.37189 -17.20833 -16.80545 -16.48329 -16.19061 -15.91399 -15.78997 -15.49600 -15.42850 -15.33766 -15.25503 -15.15369 -15.10445 -14.75327 -14.31564 -14.24467 -14.13994 -13.97006 -13.34319 -13.00562 -12.83241 -12.75440 -12.61610 -12.41803 -12.07348 -11.96278 -11.92720 -11.65175 -11.44856 -11.29961 -10.66640 -9.77317 -9.16529 -8.91537 -7.49911 -5.27881 0.47462 0.54131 0.58307 1.45712 1.53269 1.57015 1.62677 1.84570 1.97312 2.53115 2.81470 2.84231 3.06754 3.30967 3.73139 3.80435 3.94249 4.22637 4.34012 4.35637 4.38852 4.44993 4.51347 4.63465 4.69883 4.73409 4.84602 5.02715 5.26279 5.30559 5.52815 5.55899 5.56392 5.82532 5.97796 6.18493 6.32711 6.64697 7.02972 7.26805 7.81388 8.11986 9.16560 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.011179 B = 0.003983 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.134468 B = 7028.590259 C = 8920.544103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.424 3.576 4 O -0.536 6.536 5 C 0.149 3.851 6 N -0.573 5.573 7 C -0.230 4.230 8 H 0.075 0.925 9 C -0.051 4.051 10 N -0.911 5.911 11 Si 0.974 3.026 12 H -0.297 1.297 13 H -0.285 1.285 14 H -0.279 1.279 15 C 0.146 3.854 16 C -0.085 4.085 17 C -0.094 4.094 18 C -0.200 4.200 19 C 0.074 3.926 20 O -0.321 6.321 21 C 0.607 3.393 22 F -0.167 7.167 23 F -0.131 7.131 24 F -0.166 7.166 25 C -0.148 4.148 26 C -0.075 4.075 27 H 0.133 0.867 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.254 0.746 33 H 0.155 0.845 34 H 0.007 0.993 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.396 -9.620 6.413 12.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.264 3.736 4 O -0.424 6.424 5 C 0.019 3.981 6 N -0.291 5.291 7 C -0.359 4.359 8 H 0.093 0.907 9 C -0.242 4.242 10 N -0.564 5.564 11 Si 0.804 3.196 12 H -0.224 1.224 13 H -0.211 1.211 14 H -0.204 1.204 15 C 0.022 3.978 16 C -0.087 4.087 17 C -0.113 4.113 18 C -0.219 4.219 19 C 0.032 3.968 20 O -0.241 6.241 21 C 0.516 3.484 22 F -0.149 7.149 23 F -0.112 7.112 24 F -0.148 7.148 25 C -0.166 4.166 26 C -0.094 4.094 27 H 0.151 0.849 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.067 0.933 33 H 0.171 0.829 34 H 0.025 0.975 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 4.382 -9.079 6.362 11.920 hybrid contribution -0.204 0.219 -0.553 0.629 sum 4.178 -8.860 5.809 11.388 Atomic orbital electron populations 1.23398 0.76466 1.05108 1.01597 1.86567 1.23989 1.34008 1.84258 1.26819 0.94982 0.80814 0.70936 1.90604 1.67778 1.37934 1.46106 1.20775 0.84657 0.87791 1.04888 1.44129 1.74433 1.07066 1.03427 1.19726 1.33050 0.97364 0.85752 0.90709 1.25272 1.01520 0.97542 0.99828 1.69198 1.51640 1.12793 1.22750 0.85143 0.76946 0.78073 0.79462 1.22428 1.21129 1.20450 1.21308 0.88110 1.05332 0.83084 1.20823 0.99097 0.93506 0.95286 1.21090 0.95686 0.97110 0.97379 1.21399 0.93837 1.00341 1.06297 1.18822 0.80413 0.97588 0.99945 1.86354 1.31010 1.38690 1.68060 1.19273 0.75187 0.77697 0.76219 1.93290 1.92325 1.54607 1.74639 1.93292 1.31547 1.95604 1.90781 1.93288 1.73786 1.95986 1.51720 1.20803 0.98504 0.96271 1.01055 1.22747 0.89750 1.02170 0.94688 0.84922 0.92876 0.93138 0.87650 0.87379 0.93345 0.82919 0.97459 0.84925 0.84490 0.84653 0.81145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.37 -11.73 10.56 -51.32 -0.54 -12.27 16 3 C 0.42 16.34 8.03 71.24 0.57 16.91 16 4 O -0.54 -25.13 16.18 21.97 0.36 -24.77 16 5 C 0.15 5.54 6.28 85.64 0.54 6.07 16 6 N -0.57 -26.11 2.00 -710.67 -1.42 -27.53 16 7 C -0.23 -11.46 9.82 84.03 0.82 -10.64 16 8 H 0.08 3.68 7.83 -2.91 -0.02 3.65 16 9 C -0.05 -2.54 5.45 84.86 0.46 -2.08 16 10 N -0.91 -44.83 5.73 21.65 0.12 -44.70 16 11 Si 0.97 41.75 29.56 68.60 2.03 43.77 16 12 H -0.30 -13.07 7.11 99.48 0.71 -12.37 16 13 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 14 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 15 C 0.15 6.60 5.29 85.63 0.45 7.06 16 16 C -0.08 -3.45 5.46 -19.85 -0.11 -3.56 16 17 C -0.09 -3.27 9.34 22.25 0.21 -3.06 16 18 C -0.20 -6.49 8.26 22.37 0.18 -6.30 16 19 C 0.07 2.50 6.48 22.51 0.15 2.65 16 20 O -0.32 -9.71 10.37 -92.42 -0.96 -10.67 16 21 C 0.61 15.40 3.42 113.37 0.39 15.79 16 22 F -0.17 -4.23 15.56 44.97 0.70 -3.53 16 23 F -0.13 -2.99 17.53 44.97 0.79 -2.20 16 24 F -0.17 -4.12 15.56 44.97 0.70 -3.42 16 25 C -0.15 -5.35 9.99 22.36 0.22 -5.12 16 26 C -0.08 -3.10 9.20 22.25 0.20 -2.89 16 27 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 30 H 0.11 3.58 8.04 -2.39 -0.02 3.56 16 31 H 0.11 3.45 7.04 -2.39 -0.02 3.43 16 32 H 0.25 12.08 8.08 -92.70 -0.75 11.33 16 33 H 0.16 7.92 4.55 -62.32 -0.28 7.63 16 34 H 0.01 0.32 8.08 -2.39 -0.02 0.30 16 35 H 0.13 4.03 7.43 -2.91 -0.02 4.00 16 36 H 0.14 3.84 5.10 -2.91 -0.01 3.83 16 37 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.17 7.67 4.54 -3.34 -0.02 7.65 16 Total: -1.00 -56.87 335.11 7.94 -48.93 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.88 Total: 19.68 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 5.29 Total: 16.70 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -1.30 Total: -72.23 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -1.15 Total: -47.71 kcal Atomic # 9 Polarization: -11.33 SS G_CDS: 2.19 Total: -9.15 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -56.87 7.94 -48.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080896154.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.629 kcal (2) G-P(sol) polarization free energy of solvation -56.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.33 seconds