Wall clock time and date at job start Tue Mar 31 2020 17:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34222 * 117.00063 * 2 1 4 4 O 1.20830 * 120.00508 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00318 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47520 * 180.02562 * 5 3 2 7 7 C 1.36937 * 119.99732 * 270.40527 * 6 5 3 8 8 H 1.07999 * 119.99709 * 188.06722 * 7 6 5 9 9 C 1.38806 * 120.00466 * 8.07107 * 7 6 5 10 10 N 1.31627 * 119.99593 * 25.11338 * 9 7 6 11 11 Si 1.86801 * 120.00392 * 205.11895 * 9 7 6 12 12 H 1.48494 * 109.47226 * 89.99354 * 11 9 7 13 13 H 1.48502 * 109.47076 * 210.00066 * 11 9 7 14 14 H 1.48501 * 109.46720 * 329.99761 * 11 9 7 15 15 C 1.46496 * 119.99884 * 90.41031 * 6 5 3 16 16 C 1.50703 * 109.47000 * 269.99641 * 15 6 5 17 17 C 1.38285 * 119.97530 * 270.02607 * 16 15 6 18 18 C 1.38243 * 120.11300 * 180.02562 * 17 16 15 19 19 C 1.38165 * 120.05194 * 359.67806 * 18 17 16 20 20 C 1.38705 * 119.94713 * 0.57195 * 19 18 17 21 21 O 1.35902 * 120.05918 * 179.72497 * 20 19 18 22 22 C 1.42900 * 116.99891 * 359.72501 * 21 20 19 23 23 F 1.39901 * 109.47064 * 59.99946 * 22 21 20 24 24 F 1.39900 * 109.47464 * 180.02562 * 22 21 20 25 25 F 1.39905 * 109.46973 * 300.00317 * 22 21 20 26 26 C 1.38129 * 119.96894 * 90.00060 * 16 15 6 27 27 H 1.08995 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46844 * 300.00458 * 1 2 3 29 29 H 1.09000 * 109.47114 * 59.99525 * 1 2 3 30 30 H 1.09002 * 109.46992 * 59.99697 * 5 3 2 31 31 H 1.08999 * 109.47235 * 300.00281 * 5 3 2 32 32 H 0.97005 * 119.99232 * 179.97438 * 10 9 7 33 33 H 1.08997 * 109.47464 * 150.00026 * 15 6 5 34 34 H 1.08995 * 109.47203 * 29.99910 * 15 6 5 35 35 H 1.08004 * 119.94002 * 359.97438 * 17 16 15 36 36 H 1.07996 * 119.97137 * 179.97438 * 18 17 16 37 37 H 1.08001 * 120.02480 * 180.30123 * 19 18 17 38 38 H 1.08005 * 120.02720 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.1674 3.3394 -1.1854 8 1 4.5972 4.3302 -1.1905 9 6 3.8030 2.7348 -2.3806 10 7 2.8699 1.8065 -2.3908 11 14 4.6370 3.2384 -3.9744 12 1 5.8342 2.3885 -4.1967 13 1 3.6899 3.0651 -5.1050 14 1 5.0500 4.6623 -3.8885 15 6 4.1987 3.3787 1.2692 16 6 2.9106 4.0213 1.7153 17 6 2.6097 5.3122 1.3210 18 6 1.4292 5.9046 1.7290 19 6 0.5437 5.2055 2.5266 20 6 0.8456 3.9125 2.9278 21 8 -0.0211 3.2248 3.7170 22 6 -1.2221 3.8972 4.1011 23 9 -1.9491 4.2433 2.9570 24 9 -1.9931 3.0515 4.9059 25 9 -0.8997 5.0552 4.8168 26 6 2.0313 3.3202 2.5173 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.9557 0.7809 -0.8908 31 1 3.9565 0.7805 0.8891 32 1 2.6151 1.3843 -3.2262 33 1 4.9605 4.1467 1.1354 34 1 4.5299 2.6661 2.0245 35 1 3.2986 5.8587 0.6939 36 1 1.1967 6.9130 1.4200 37 1 -0.3807 5.6670 2.8411 38 1 2.2668 2.3121 2.8250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093562550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:36 Heat of formation + Delta-G solvation = -216.498441 kcal Electronic energy + Delta-G solvation = -30350.067313 eV Core-core repulsion = 25551.554395 eV Total energy + Delta-G solvation = -4798.512918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -50.36744 -48.11243 -47.94172 -39.87903 -38.89433 -37.58499 -35.82490 -34.48460 -32.13139 -30.41788 -29.94675 -28.06767 -26.13385 -25.99305 -25.51687 -22.55729 -22.32144 -21.15696 -19.76832 -19.06736 -19.04201 -18.67423 -16.98639 -16.44084 -16.10049 -15.86139 -15.52801 -15.10862 -15.05148 -14.85586 -14.73993 -14.69201 -14.41967 -14.27702 -14.13353 -14.03826 -13.79096 -13.64692 -13.30204 -12.92381 -12.89892 -12.22952 -12.14629 -11.62029 -11.52915 -11.25134 -11.08919 -10.96548 -10.83271 -10.68914 -10.43902 -10.20727 -10.01524 -9.55992 -9.09166 -8.59988 -8.31437 -8.03068 -7.23602 -6.02413 -3.28123 1.66256 1.74288 1.82821 2.96263 3.31197 3.38440 3.40373 3.89155 3.92154 3.97096 4.08097 4.23785 4.44601 5.03881 5.12464 5.22035 5.34682 5.46980 5.60965 5.78127 5.84040 5.90447 5.91098 6.08233 6.13059 6.26303 6.33556 6.45854 6.53142 6.66322 6.75960 6.89009 7.02125 7.18656 7.46002 7.59747 7.82176 8.04406 8.90843 9.42019 9.61888 9.99750 11.08103 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.004415 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.831321 B = 6341.073422 C = 7182.908681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.384 6.384 3 C 0.461 3.539 4 O -0.493 6.493 5 C 0.185 3.815 6 N -0.556 5.556 7 C -0.252 4.252 8 H 0.084 0.916 9 C 0.003 3.997 10 N -0.897 5.897 11 Si 0.911 3.089 12 H -0.285 1.285 13 H -0.293 1.293 14 H -0.279 1.279 15 C 0.174 3.826 16 C -0.038 4.038 17 C -0.113 4.113 18 C -0.085 4.085 19 C -0.204 4.204 20 C 0.097 3.903 21 O -0.313 6.313 22 C 0.602 3.398 23 F -0.166 7.166 24 F -0.139 7.139 25 F -0.170 7.170 26 C -0.101 4.101 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.115 0.885 31 H 0.052 0.948 32 H 0.259 0.741 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.478 1.832 11.448 12.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.302 6.302 3 C 0.300 3.700 4 O -0.376 6.376 5 C 0.056 3.944 6 N -0.273 5.273 7 C -0.381 4.381 8 H 0.102 0.898 9 C -0.195 4.195 10 N -0.541 5.541 11 Si 0.741 3.259 12 H -0.212 1.212 13 H -0.220 1.220 14 H -0.205 1.205 15 C 0.047 3.953 16 C -0.042 4.042 17 C -0.132 4.132 18 C -0.103 4.103 19 C -0.223 4.223 20 C 0.055 3.945 21 O -0.234 6.234 22 C 0.511 3.489 23 F -0.148 7.148 24 F -0.121 7.121 25 F -0.152 7.152 26 C -0.120 4.120 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.133 0.867 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.735 1.894 11.342 12.090 hybrid contribution -0.909 0.489 -1.102 1.510 sum -4.644 2.383 10.240 11.494 Atomic orbital electron populations 1.22806 0.79967 1.01091 1.01129 1.86530 1.20814 1.36971 1.85913 1.25385 0.93395 0.80368 0.70867 1.90519 1.66398 1.36048 1.44669 1.20585 0.85874 0.86321 1.01630 1.44574 1.74561 1.06924 1.01265 1.19328 1.34501 1.01654 0.82579 0.89802 1.24788 0.97224 0.99353 0.98157 1.69854 1.27581 1.30108 1.26595 0.86140 0.78981 0.78156 0.82640 1.21238 1.21985 1.20467 1.20179 0.91405 0.95518 0.88168 1.20855 0.98997 0.92950 0.91407 1.20957 0.97282 0.95319 0.99638 1.20774 0.93720 0.99344 0.96496 1.21165 1.01870 0.94169 1.05144 1.18600 0.89884 0.91685 0.94299 1.86383 1.28146 1.42372 1.66454 1.19382 0.79480 0.74630 0.75367 1.93301 1.78687 1.91857 1.50958 1.93268 1.73837 1.71868 1.73086 1.93273 1.92450 1.50463 1.79010 1.20032 0.91649 0.99822 1.00534 0.90336 0.93776 0.93023 0.86708 0.92971 0.93069 0.91143 0.92507 0.85950 0.86160 0.86228 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.84 10.56 101.05 1.07 1.90 16 2 O -0.38 -8.39 10.57 -39.24 -0.41 -8.80 16 3 C 0.46 10.89 5.80 36.01 0.21 11.09 16 4 O -0.49 -12.89 13.22 -18.75 -0.25 -13.14 16 5 C 0.18 4.09 5.59 -5.19 -0.03 4.06 16 6 N -0.56 -12.44 2.07 -175.99 -0.36 -12.80 16 7 C -0.25 -6.26 9.70 -15.06 -0.15 -6.40 16 8 H 0.08 2.03 7.93 -52.49 -0.42 1.61 16 9 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 10 N -0.90 -24.38 8.94 55.49 0.50 -23.88 16 11 Si 0.91 20.69 29.62 -169.99 -5.04 15.65 16 12 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 C 0.17 3.19 5.83 -5.19 -0.03 3.16 16 16 C -0.04 -0.72 4.49 -104.64 -0.47 -1.19 16 17 C -0.11 -2.05 9.70 -39.56 -0.38 -2.44 16 18 C -0.09 -1.44 10.04 -39.61 -0.40 -1.84 16 19 C -0.20 -3.52 8.26 -39.44 -0.33 -3.85 16 20 C 0.10 1.76 6.48 -39.22 -0.25 1.51 16 21 O -0.31 -5.30 10.37 -19.43 -0.20 -5.50 16 22 C 0.60 8.70 3.42 101.05 0.35 9.05 16 23 F -0.17 -2.51 15.55 2.25 0.04 -2.48 16 24 F -0.14 -1.82 17.53 2.25 0.04 -1.78 16 25 F -0.17 -2.29 15.58 2.25 0.04 -2.26 16 26 C -0.10 -1.89 7.85 -39.43 -0.31 -2.20 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 29 H 0.05 1.03 8.13 -51.93 -0.42 0.60 16 30 H 0.12 2.76 6.30 -51.93 -0.33 2.43 16 31 H 0.05 0.97 7.89 -51.93 -0.41 0.56 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.07 1.19 7.97 -51.93 -0.41 0.78 16 34 H 0.06 0.90 7.83 -51.93 -0.41 0.50 16 35 H 0.12 2.10 8.06 -52.48 -0.42 1.68 16 36 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.12 1.86 5.10 -52.49 -0.27 1.59 16 38 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 337.31 15.07 5.08 5.08 Total: -1.00 -29.62 337.31 -5.30 -34.92 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -3.91 Total: 2.14 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: -0.81 Total: 12.85 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.13 Total: -36.69 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.86 Total: -27.44 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.11 Total: -6.52 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.04 Total: 15.65 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.62 -5.30 -34.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093562550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.577 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds