Wall clock time and date at job start Tue Mar 31 2020 17:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34222 * 117.00063 * 2 1 4 4 O 1.20830 * 120.00508 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00318 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47520 * 180.02562 * 5 3 2 7 7 C 1.36937 * 119.99732 * 270.40527 * 6 5 3 8 8 H 1.07999 * 119.99709 * 188.06722 * 7 6 5 9 9 C 1.38806 * 120.00466 * 8.07107 * 7 6 5 10 10 N 1.31627 * 119.99593 * 25.11338 * 9 7 6 11 11 Si 1.86801 * 120.00392 * 205.11895 * 9 7 6 12 12 H 1.48494 * 109.47226 * 89.99354 * 11 9 7 13 13 H 1.48502 * 109.47076 * 210.00066 * 11 9 7 14 14 H 1.48501 * 109.46720 * 329.99761 * 11 9 7 15 15 C 1.46496 * 119.99884 * 90.41031 * 6 5 3 16 16 C 1.50703 * 109.47000 * 269.99641 * 15 6 5 17 17 C 1.38285 * 119.97530 * 270.02607 * 16 15 6 18 18 C 1.38243 * 120.11300 * 180.02562 * 17 16 15 19 19 C 1.38165 * 120.05194 * 359.67806 * 18 17 16 20 20 C 1.38705 * 119.94713 * 0.57195 * 19 18 17 21 21 O 1.35902 * 120.05918 * 179.72497 * 20 19 18 22 22 C 1.42900 * 116.99891 * 359.72501 * 21 20 19 23 23 F 1.39901 * 109.47064 * 59.99946 * 22 21 20 24 24 F 1.39900 * 109.47464 * 180.02562 * 22 21 20 25 25 F 1.39905 * 109.46973 * 300.00317 * 22 21 20 26 26 C 1.38129 * 119.96894 * 90.00060 * 16 15 6 27 27 H 1.08995 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46844 * 300.00458 * 1 2 3 29 29 H 1.09000 * 109.47114 * 59.99525 * 1 2 3 30 30 H 1.09002 * 109.46992 * 59.99697 * 5 3 2 31 31 H 1.08999 * 109.47235 * 300.00281 * 5 3 2 32 32 H 0.97005 * 119.99232 * 179.97438 * 10 9 7 33 33 H 1.08997 * 109.47464 * 150.00026 * 15 6 5 34 34 H 1.08995 * 109.47203 * 29.99910 * 15 6 5 35 35 H 1.08004 * 119.94002 * 359.97438 * 17 16 15 36 36 H 1.07996 * 119.97137 * 179.97438 * 18 17 16 37 37 H 1.08001 * 120.02480 * 180.30123 * 19 18 17 38 38 H 1.08005 * 120.02720 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.1674 3.3394 -1.1854 8 1 4.5972 4.3302 -1.1905 9 6 3.8030 2.7348 -2.3806 10 7 2.8699 1.8065 -2.3908 11 14 4.6370 3.2384 -3.9744 12 1 5.8342 2.3885 -4.1967 13 1 3.6899 3.0651 -5.1050 14 1 5.0500 4.6623 -3.8885 15 6 4.1987 3.3787 1.2692 16 6 2.9106 4.0213 1.7153 17 6 2.6097 5.3122 1.3210 18 6 1.4292 5.9046 1.7290 19 6 0.5437 5.2055 2.5266 20 6 0.8456 3.9125 2.9278 21 8 -0.0211 3.2248 3.7170 22 6 -1.2221 3.8972 4.1011 23 9 -1.9491 4.2433 2.9570 24 9 -1.9931 3.0515 4.9059 25 9 -0.8997 5.0552 4.8168 26 6 2.0313 3.3202 2.5173 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.9557 0.7809 -0.8908 31 1 3.9565 0.7805 0.8891 32 1 2.6151 1.3843 -3.2262 33 1 4.9605 4.1467 1.1354 34 1 4.5299 2.6661 2.0245 35 1 3.2986 5.8587 0.6939 36 1 1.1967 6.9130 1.4200 37 1 -0.3807 5.6670 2.8411 38 1 2.2668 2.3121 2.8250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093562550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:32 Heat of formation + Delta-G solvation = -231.826301 kcal Electronic energy + Delta-G solvation = -30350.731979 eV Core-core repulsion = 25551.554395 eV Total energy + Delta-G solvation = -4799.177584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 3.78 seconds Orbital eigenvalues (eV) -51.51437 -49.23181 -49.10013 -41.23719 -40.62546 -38.98721 -37.46685 -36.27555 -33.80294 -31.98514 -31.35697 -29.72353 -27.65129 -27.54863 -26.88019 -24.16868 -23.68780 -22.57873 -21.50633 -20.27546 -20.22816 -19.95172 -18.77273 -18.01807 -17.60780 -17.32546 -17.12615 -16.81569 -16.44284 -16.26195 -16.18287 -15.88340 -15.57740 -15.52292 -15.44121 -15.31983 -15.20799 -15.04627 -14.92841 -14.35640 -14.25029 -13.85364 -13.73298 -13.34436 -13.04955 -12.71566 -12.69186 -12.62663 -12.39907 -12.22315 -11.99585 -11.94503 -11.83788 -11.29204 -10.90192 -10.45283 -9.74464 -9.42366 -9.02035 -7.93196 -5.18813 0.35741 0.42396 0.48343 1.51441 1.54506 1.60770 1.75633 2.15413 2.39265 2.59092 2.72767 2.73459 2.97232 3.29602 3.70014 3.74420 3.82869 4.12495 4.21052 4.39085 4.43331 4.46131 4.51525 4.55315 4.68225 4.77384 4.88192 5.06378 5.09688 5.17652 5.24875 5.39423 5.51383 5.68320 5.78338 6.06895 6.10371 6.21590 7.04011 7.61188 7.83718 8.16760 9.15552 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.004415 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.831321 B = 6341.073422 C = 7182.908681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.391 6.391 3 C 0.462 3.538 4 O -0.523 6.523 5 C 0.184 3.816 6 N -0.567 5.567 7 C -0.246 4.246 8 H 0.088 0.912 9 C -0.048 4.048 10 N -0.926 5.926 11 Si 0.965 3.035 12 H -0.283 1.283 13 H -0.311 1.311 14 H -0.271 1.271 15 C 0.171 3.829 16 C -0.049 4.049 17 C -0.128 4.128 18 C -0.087 4.087 19 C -0.208 4.208 20 C 0.087 3.913 21 O -0.323 6.323 22 C 0.608 3.392 23 F -0.170 7.170 24 F -0.129 7.129 25 F -0.162 7.162 26 C -0.113 4.113 27 H 0.121 0.879 28 H 0.044 0.956 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.247 0.753 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.135 0.865 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 2.361 12.519 13.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.308 6.308 3 C 0.303 3.697 4 O -0.409 6.409 5 C 0.055 3.945 6 N -0.285 5.285 7 C -0.375 4.375 8 H 0.106 0.894 9 C -0.242 4.242 10 N -0.572 5.572 11 Si 0.795 3.205 12 H -0.210 1.210 13 H -0.239 1.239 14 H -0.196 1.196 15 C 0.046 3.954 16 C -0.052 4.052 17 C -0.147 4.147 18 C -0.104 4.104 19 C -0.227 4.227 20 C 0.046 3.954 21 O -0.244 6.244 22 C 0.517 3.483 23 F -0.152 7.152 24 F -0.111 7.111 25 F -0.144 7.144 26 C -0.132 4.132 27 H 0.139 0.861 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.153 0.847 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.634 2.434 12.453 13.199 hybrid contribution -1.002 0.344 -1.290 1.670 sum -4.636 2.778 11.163 12.402 Atomic orbital electron populations 1.23014 0.78174 1.03626 1.00124 1.86501 1.22592 1.36177 1.85537 1.25638 0.93959 0.80274 0.69866 1.90491 1.67176 1.37033 1.46191 1.20578 0.85182 0.86612 1.02141 1.44615 1.74676 1.07226 1.01961 1.19589 1.32917 1.01430 0.83595 0.89435 1.25374 0.98131 1.00200 1.00533 1.70007 1.29322 1.31853 1.26065 0.85284 0.77668 0.78142 0.79386 1.20951 1.23851 1.19636 1.20374 0.91591 0.96365 0.87113 1.20883 0.98946 0.93477 0.91879 1.21189 0.98086 0.95467 0.99913 1.21127 0.93036 1.00575 0.95704 1.21432 1.02490 0.93927 1.04863 1.18735 0.90072 0.92132 0.94496 1.86345 1.28786 1.42965 1.66294 1.19252 0.78859 0.74838 0.75349 1.93295 1.78654 1.91884 1.51337 1.93293 1.73415 1.71655 1.72708 1.93288 1.92376 1.49983 1.78741 1.20130 0.92168 0.99967 1.00962 0.86055 0.93744 0.95016 0.88895 0.89490 0.94360 0.89762 0.89960 0.85339 0.83342 0.84710 0.86177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.63 10.56 113.37 1.20 2.82 16 2 O -0.39 -16.82 10.57 -51.34 -0.54 -17.36 16 3 C 0.46 21.72 5.80 71.24 0.41 22.14 16 4 O -0.52 -27.38 13.22 21.95 0.29 -27.09 16 5 C 0.18 8.03 5.59 85.63 0.48 8.51 16 6 N -0.57 -24.81 2.07 -710.71 -1.47 -26.28 16 7 C -0.25 -12.04 9.70 84.03 0.82 -11.22 16 8 H 0.09 4.13 7.93 -2.91 -0.02 4.11 16 9 C -0.05 -2.46 4.90 84.86 0.42 -2.04 16 10 N -0.93 -51.12 8.94 21.65 0.19 -50.93 16 11 Si 0.97 42.86 29.62 68.60 2.03 44.89 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.31 -14.56 7.11 99.48 0.71 -13.85 16 14 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 15 C 0.17 5.97 5.83 85.63 0.50 6.47 16 16 C -0.05 -1.77 4.49 -19.88 -0.09 -1.86 16 17 C -0.13 -4.46 9.70 22.28 0.22 -4.24 16 18 C -0.09 -2.76 10.04 22.25 0.22 -2.53 16 19 C -0.21 -6.82 8.26 22.36 0.18 -6.63 16 20 C 0.09 3.08 6.48 22.50 0.15 3.22 16 21 O -0.32 -10.56 10.37 -92.45 -0.96 -11.52 16 22 C 0.61 16.58 3.42 113.37 0.39 16.97 16 23 F -0.17 -4.89 15.55 44.97 0.70 -4.19 16 24 F -0.13 -3.17 17.53 44.97 0.79 -2.38 16 25 F -0.16 -4.06 15.58 44.97 0.70 -3.36 16 26 C -0.11 -4.12 7.85 22.37 0.18 -3.94 16 27 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 28 H 0.04 1.58 8.13 -2.39 -0.02 1.56 16 29 H 0.03 1.25 8.13 -2.39 -0.02 1.23 16 30 H 0.09 4.50 6.30 -2.39 -0.02 4.48 16 31 H 0.09 3.10 7.89 -2.39 -0.02 3.08 16 32 H 0.25 13.71 8.31 -92.70 -0.77 12.94 16 33 H 0.08 2.68 7.97 -2.39 -0.02 2.66 16 34 H 0.08 2.42 7.83 -2.39 -0.02 2.40 16 35 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 36 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 37 H 0.14 3.91 5.10 -2.91 -0.01 3.89 16 38 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -62.89 337.31 7.91 -54.98 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.11 Total: 15.57 kcal Atomic # 6 Polarization: 22.59 SS G_CDS: 5.06 Total: 27.65 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -1.28 Total: -77.20 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -1.21 Total: -55.97 kcal Atomic # 9 Polarization: -12.12 SS G_CDS: 2.19 Total: -9.93 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -62.89 7.91 -54.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093562550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.845 kcal (2) G-P(sol) polarization free energy of solvation -62.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.78 seconds