Wall clock time and date at job start Tue Mar 31 2020 17:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34230 * 117.00262 * 2 1 4 4 O 1.20821 * 119.99974 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99836 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.46659 * 179.97438 * 5 3 2 7 7 C 1.36935 * 119.99626 * 263.87559 * 6 5 3 8 8 H 1.08000 * 119.99676 * 141.79180 * 7 6 5 9 9 C 1.38809 * 120.00449 * 321.78427 * 7 6 5 10 10 N 1.31623 * 119.99891 * 157.68698 * 9 7 6 11 11 Si 1.86799 * 119.99866 * 337.69338 * 9 7 6 12 12 H 1.48498 * 109.47400 * 92.72671 * 11 9 7 13 13 H 1.48506 * 109.46710 * 212.72669 * 11 9 7 14 14 H 1.48506 * 109.47231 * 332.72313 * 11 9 7 15 15 C 1.46497 * 119.99671 * 83.87965 * 6 5 3 16 16 C 1.50703 * 109.47073 * 87.88892 * 15 6 5 17 17 C 1.35841 * 120.90428 * 261.32883 * 16 15 6 18 18 C 1.41002 * 119.82841 * 179.74627 * 17 16 15 19 19 O 1.21797 * 119.15812 * 180.28157 * 18 17 16 20 20 O 1.34219 * 121.68467 * 0.56963 * 18 17 16 21 21 C 1.35027 * 121.46568 * 359.70779 * 20 18 17 22 22 C 1.38672 * 120.73347 * 180.02562 * 21 20 18 23 23 C 1.38519 * 119.78700 * 179.97438 * 22 21 20 24 24 O 1.35748 * 119.72856 * 180.02562 * 23 22 21 25 25 C 1.39369 * 120.53964 * 359.97438 * 23 22 21 26 26 C 1.36466 * 120.43453 * 0.03015 * 25 23 22 27 27 C 1.39969 * 119.79031 * 359.97438 * 26 25 23 28 28 H 1.09002 * 109.47174 * 299.99885 * 1 2 3 29 29 H 1.09000 * 109.47248 * 60.00070 * 1 2 3 30 30 H 1.08996 * 109.47411 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47333 * 59.99831 * 5 3 2 32 32 H 1.08999 * 109.46930 * 299.99861 * 5 3 2 33 33 H 0.97002 * 119.99554 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.46862 * 207.88425 * 15 6 5 35 35 H 1.08994 * 109.47354 * 327.88463 * 15 6 5 36 36 H 1.08004 * 120.08347 * 0.02562 * 17 16 15 37 37 H 1.08002 * 120.11272 * 359.97438 * 22 21 20 38 38 H 0.96700 * 114.00029 * 89.99872 * 24 23 22 39 39 H 1.08005 * 119.78338 * 180.02562 * 25 23 22 40 40 H 1.08002 * 120.10355 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2967 3.3000 -1.1805 8 1 4.0123 4.3293 -1.3420 9 6 4.9817 2.6061 -2.1685 10 7 4.9097 3.0026 -3.4215 11 14 6.0054 1.1094 -1.7197 12 1 5.1788 -0.1161 -1.8608 13 1 7.1785 1.0224 -2.6261 14 1 6.4729 1.2324 -0.3155 15 6 4.0601 3.4207 1.2602 16 6 5.4254 3.2319 1.8697 17 6 5.6293 2.3197 2.8555 18 6 6.9173 2.1581 3.4059 19 8 7.0875 1.3330 4.2856 20 8 7.9595 2.8940 2.9893 21 6 7.8237 3.8215 2.0173 22 6 8.9111 4.5731 1.5981 23 6 8.7496 5.5190 0.5991 24 8 9.8149 6.2538 0.1892 25 6 7.5027 5.7216 0.0105 26 6 6.4221 4.9907 0.4112 27 6 6.5671 4.0307 1.4194 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.9557 0.7808 -0.8907 32 1 3.9563 0.7804 0.8892 33 1 5.3881 2.5174 -4.1119 34 1 3.8906 4.4805 1.0701 35 1 3.3006 3.0489 1.9479 36 1 4.8079 1.7167 3.2135 37 1 9.8807 4.4217 2.0490 38 1 10.3110 5.8551 -0.5388 39 1 7.3907 6.4621 -0.7677 40 1 5.4582 5.1524 -0.0483 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182403645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:06 Heat of formation + Delta-G solvation = -120.849701 kcal Electronic energy + Delta-G solvation = -29295.248483 eV Core-core repulsion = 25042.739945 eV Total energy + Delta-G solvation = -4252.508537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 2.91 seconds Orbital eigenvalues (eV) -41.60314 -39.84041 -39.26165 -37.56894 -37.23325 -36.06726 -35.42683 -33.89323 -31.94915 -30.65675 -29.16685 -28.85877 -27.34983 -26.34711 -24.03160 -23.44112 -22.83393 -21.25575 -20.39086 -19.64198 -18.04609 -17.53520 -17.39575 -17.11899 -16.98013 -16.46167 -16.22681 -15.79208 -15.22962 -15.16055 -15.03693 -14.69893 -14.52882 -13.84350 -13.59979 -13.37291 -13.33886 -13.01566 -12.92842 -12.79803 -12.50339 -12.02185 -11.90339 -11.77385 -11.69486 -11.47641 -11.13780 -10.89246 -10.65208 -10.53132 -10.37049 -10.13628 -10.00440 -9.94323 -9.81666 -8.97256 -8.63543 -8.05279 -7.47761 -6.46811 -3.89330 0.43421 1.25910 1.73263 2.63052 2.83267 2.98836 3.04214 3.17730 3.21401 3.24866 3.82187 4.09316 4.21431 4.46610 4.56243 4.61390 4.75185 4.90535 5.10427 5.21370 5.32659 5.37760 5.42332 5.45505 5.60021 5.63899 5.70720 5.77134 5.89152 5.90297 5.99692 6.09878 6.24626 6.30740 6.45735 6.63087 6.68792 6.86641 7.44568 7.46847 7.54403 7.76576 7.88305 8.28259 8.47915 9.15748 9.49372 10.64850 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.005133 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.535322 B = 5453.312430 C = 6637.134006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.374 6.374 3 C 0.432 3.568 4 O -0.493 6.493 5 C 0.135 3.865 6 N -0.558 5.558 7 C -0.274 4.274 8 H 0.092 0.908 9 C 0.051 3.949 10 N -0.867 5.867 11 Si 0.855 3.145 12 H -0.275 1.275 13 H -0.290 1.290 14 H -0.260 1.260 15 C 0.169 3.831 16 C 0.037 3.963 17 C -0.289 4.289 18 C 0.514 3.486 19 O -0.488 6.488 20 O -0.278 6.278 21 C 0.156 3.844 22 C -0.179 4.179 23 C 0.156 3.844 24 O -0.496 6.496 25 C -0.170 4.170 26 C -0.008 4.008 27 C -0.145 4.145 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.272 0.728 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.155 0.845 37 H 0.142 0.858 38 H 0.396 0.604 39 H 0.138 0.862 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 1.112 5.238 5.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.291 6.291 3 C 0.271 3.729 4 O -0.378 6.378 5 C 0.007 3.993 6 N -0.276 5.276 7 C -0.402 4.402 8 H 0.110 0.890 9 C -0.154 4.154 10 N -0.504 5.504 11 Si 0.683 3.317 12 H -0.202 1.202 13 H -0.216 1.216 14 H -0.184 1.184 15 C 0.044 3.956 16 C 0.032 3.968 17 C -0.310 4.310 18 C 0.366 3.634 19 O -0.378 6.378 20 O -0.190 6.190 21 C 0.111 3.889 22 C -0.198 4.198 23 C 0.111 3.889 24 O -0.307 6.307 25 C -0.189 4.189 26 C -0.026 4.026 27 C -0.146 4.146 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.172 0.828 37 H 0.159 0.841 38 H 0.253 0.747 39 H 0.156 0.844 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.298 1.398 5.927 6.226 hybrid contribution 0.535 -1.359 -0.508 1.546 sum 1.833 0.039 5.419 5.721 Atomic orbital electron populations 1.23099 0.78132 1.02658 1.02022 1.86594 1.22326 1.35362 1.84820 1.26025 0.93826 0.80962 0.72044 1.90579 1.66751 1.36308 1.44205 1.21249 0.85689 0.88552 1.03817 1.43872 1.72504 1.08384 1.02843 1.18828 1.31977 0.99699 0.89650 0.89028 1.25517 0.96803 0.97914 0.95203 1.69843 1.40296 1.40772 0.99480 0.87254 0.81380 0.83280 0.79791 1.20229 1.21643 1.18401 1.20301 0.88668 0.99026 0.87557 1.22746 0.97899 0.88773 0.87405 1.22151 0.97253 1.07142 1.04502 1.19213 0.83222 0.79136 0.81866 1.90919 1.84427 1.32216 1.30278 1.83469 1.42816 1.44641 1.48066 1.18805 0.93597 0.88647 0.87837 1.20510 0.98456 0.98424 1.02441 1.18250 0.87453 0.89754 0.93440 1.84728 1.41830 1.47779 1.56378 1.21194 0.92244 1.02880 1.02572 1.21220 1.00738 0.89897 0.90774 1.19095 0.92003 1.01910 1.01605 0.92550 0.92338 0.89011 0.87958 0.89571 0.91799 0.89743 0.91166 0.82780 0.84060 0.74701 0.84404 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.53 16 2 O -0.37 -6.35 10.56 -39.26 -0.41 -6.76 16 3 C 0.43 8.31 8.01 36.01 0.29 8.60 16 4 O -0.49 -10.56 16.13 -18.75 -0.30 -10.86 16 5 C 0.14 2.61 4.89 -5.19 -0.03 2.59 16 6 N -0.56 -11.19 1.55 -175.98 -0.27 -11.46 16 7 C -0.27 -6.30 8.01 -15.06 -0.12 -6.42 16 8 H 0.09 2.25 7.53 -52.49 -0.40 1.86 16 9 C 0.05 1.24 5.26 -17.43 -0.09 1.15 16 10 N -0.87 -22.82 13.97 55.49 0.78 -22.04 16 11 Si 0.86 19.17 25.18 -169.99 -4.28 14.89 16 12 H -0.27 -5.99 6.57 56.52 0.37 -5.62 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 15 C 0.17 2.84 5.34 -5.19 -0.03 2.81 16 16 C 0.04 0.62 5.66 -102.18 -0.58 0.04 16 17 C -0.29 -4.85 9.59 -39.39 -0.38 -5.23 16 18 C 0.51 9.64 7.89 31.78 0.25 9.89 16 19 O -0.49 -10.17 17.91 -19.60 -0.35 -10.53 16 20 O -0.28 -5.06 9.82 -20.79 -0.20 -5.26 16 21 C 0.16 2.62 6.76 -38.48 -0.26 2.36 16 22 C -0.18 -2.60 9.94 -39.32 -0.39 -2.99 16 23 C 0.16 2.12 6.70 -39.06 -0.26 1.86 16 24 O -0.50 -5.61 13.48 -18.95 -0.26 -5.86 16 25 C -0.17 -2.43 9.91 -39.80 -0.39 -2.82 16 26 C -0.01 -0.13 8.75 -39.57 -0.35 -0.48 16 27 C -0.15 -2.46 5.87 -105.01 -0.62 -3.07 16 28 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 2.14 3.61 -51.93 -0.19 1.95 16 32 H 0.09 1.45 8.12 -51.93 -0.42 1.02 16 33 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.08 1.34 6.96 -51.93 -0.36 0.98 16 35 H 0.07 1.07 7.99 -51.93 -0.41 0.66 16 36 H 0.15 2.29 8.05 -52.48 -0.42 1.87 16 37 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.40 2.64 9.06 45.56 0.41 3.06 16 39 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.16 2.64 4.86 -52.49 -0.26 2.38 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -30.82 347.53 -5.28 -36.10 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -3.32 Total: 6.73 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -1.89 Total: 9.82 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.50 Total: -33.51 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -1.53 Total: -39.28 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.28 Total: 14.89 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.82 -5.28 -36.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182403645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.750 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.91 seconds