Wall clock time and date at job start Tue Mar 31 2020 17:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34230 * 117.00262 * 2 1 4 4 O 1.20821 * 119.99974 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99836 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.46659 * 179.97438 * 5 3 2 7 7 C 1.36935 * 119.99626 * 263.87559 * 6 5 3 8 8 H 1.08000 * 119.99676 * 141.79180 * 7 6 5 9 9 C 1.38809 * 120.00449 * 321.78427 * 7 6 5 10 10 N 1.31623 * 119.99891 * 157.68698 * 9 7 6 11 11 Si 1.86799 * 119.99866 * 337.69338 * 9 7 6 12 12 H 1.48498 * 109.47400 * 92.72671 * 11 9 7 13 13 H 1.48506 * 109.46710 * 212.72669 * 11 9 7 14 14 H 1.48506 * 109.47231 * 332.72313 * 11 9 7 15 15 C 1.46497 * 119.99671 * 83.87965 * 6 5 3 16 16 C 1.50703 * 109.47073 * 87.88892 * 15 6 5 17 17 C 1.35841 * 120.90428 * 261.32883 * 16 15 6 18 18 C 1.41002 * 119.82841 * 179.74627 * 17 16 15 19 19 O 1.21797 * 119.15812 * 180.28157 * 18 17 16 20 20 O 1.34219 * 121.68467 * 0.56963 * 18 17 16 21 21 C 1.35027 * 121.46568 * 359.70779 * 20 18 17 22 22 C 1.38672 * 120.73347 * 180.02562 * 21 20 18 23 23 C 1.38519 * 119.78700 * 179.97438 * 22 21 20 24 24 O 1.35748 * 119.72856 * 180.02562 * 23 22 21 25 25 C 1.39369 * 120.53964 * 359.97438 * 23 22 21 26 26 C 1.36466 * 120.43453 * 0.03015 * 25 23 22 27 27 C 1.39969 * 119.79031 * 359.97438 * 26 25 23 28 28 H 1.09002 * 109.47174 * 299.99885 * 1 2 3 29 29 H 1.09000 * 109.47248 * 60.00070 * 1 2 3 30 30 H 1.08996 * 109.47411 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47333 * 59.99831 * 5 3 2 32 32 H 1.08999 * 109.46930 * 299.99861 * 5 3 2 33 33 H 0.97002 * 119.99554 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.46862 * 207.88425 * 15 6 5 35 35 H 1.08994 * 109.47354 * 327.88463 * 15 6 5 36 36 H 1.08004 * 120.08347 * 0.02562 * 17 16 15 37 37 H 1.08002 * 120.11272 * 359.97438 * 22 21 20 38 38 H 0.96700 * 114.00029 * 89.99872 * 24 23 22 39 39 H 1.08005 * 119.78338 * 180.02562 * 25 23 22 40 40 H 1.08002 * 120.10355 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2967 3.3000 -1.1805 8 1 4.0123 4.3293 -1.3420 9 6 4.9817 2.6061 -2.1685 10 7 4.9097 3.0026 -3.4215 11 14 6.0054 1.1094 -1.7197 12 1 5.1788 -0.1161 -1.8608 13 1 7.1785 1.0224 -2.6261 14 1 6.4729 1.2324 -0.3155 15 6 4.0601 3.4207 1.2602 16 6 5.4254 3.2319 1.8697 17 6 5.6293 2.3197 2.8555 18 6 6.9173 2.1581 3.4059 19 8 7.0875 1.3330 4.2856 20 8 7.9595 2.8940 2.9893 21 6 7.8237 3.8215 2.0173 22 6 8.9111 4.5731 1.5981 23 6 8.7496 5.5190 0.5991 24 8 9.8149 6.2538 0.1892 25 6 7.5027 5.7216 0.0105 26 6 6.4221 4.9907 0.4112 27 6 6.5671 4.0307 1.4194 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.9557 0.7808 -0.8907 32 1 3.9563 0.7804 0.8892 33 1 5.3881 2.5174 -4.1119 34 1 3.8906 4.4805 1.0701 35 1 3.3006 3.0489 1.9479 36 1 4.8079 1.7167 3.2135 37 1 9.8807 4.4217 2.0490 38 1 10.3110 5.8551 -0.5388 39 1 7.3907 6.4621 -0.7677 40 1 5.4582 5.1524 -0.0483 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182403645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:01 Heat of formation + Delta-G solvation = -139.960694 kcal Electronic energy + Delta-G solvation = -29296.077198 eV Core-core repulsion = 25042.739945 eV Total energy + Delta-G solvation = -4253.337252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 4.94 seconds Orbital eigenvalues (eV) -42.95951 -41.29113 -40.45733 -38.88417 -38.68215 -37.38967 -36.81052 -35.33091 -33.66031 -31.87724 -30.55977 -30.10035 -28.73633 -27.74372 -25.32750 -24.93355 -24.12437 -22.64842 -21.84774 -20.86315 -19.40602 -19.05732 -18.69299 -18.51601 -18.28153 -17.87681 -17.68381 -17.19493 -16.80080 -16.48537 -16.13748 -16.01490 -15.93458 -15.20471 -14.99677 -14.80627 -14.66842 -14.48001 -14.31968 -14.17891 -14.03809 -13.40230 -13.15644 -13.06128 -12.91419 -12.87297 -12.77032 -12.33248 -12.16648 -11.87481 -11.70431 -11.67837 -11.55656 -11.37334 -11.23053 -10.71624 -9.86287 -9.31586 -9.11660 -8.29840 -5.72098 -0.83155 -0.00319 0.47914 1.22191 1.29407 1.31046 1.41985 1.45460 1.71083 1.87893 2.29790 2.57855 2.95299 3.05352 3.20128 3.26384 3.35702 3.49105 3.95705 3.97610 4.07652 4.19135 4.21933 4.32921 4.36600 4.37122 4.38542 4.47143 4.67149 4.71590 4.79417 4.85282 4.97482 5.03229 5.26366 5.37683 5.47788 5.51446 5.77127 6.07402 6.11756 6.34720 6.63160 6.73371 6.96105 7.40356 7.78434 8.86419 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.005133 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.535322 B = 5453.312430 C = 6637.134006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.376 6.376 3 C 0.437 3.563 4 O -0.521 6.521 5 C 0.130 3.870 6 N -0.570 5.570 7 C -0.252 4.252 8 H 0.068 0.932 9 C 0.013 3.987 10 N -0.919 5.919 11 Si 0.897 3.103 12 H -0.268 1.268 13 H -0.304 1.304 14 H -0.258 1.258 15 C 0.173 3.827 16 C 0.045 3.955 17 C -0.282 4.282 18 C 0.510 3.490 19 O -0.515 6.515 20 O -0.284 6.284 21 C 0.139 3.861 22 C -0.177 4.177 23 C 0.175 3.825 24 O -0.494 6.494 25 C -0.170 4.170 26 C -0.015 4.015 27 C -0.165 4.165 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.267 0.733 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.176 0.824 37 H 0.161 0.839 38 H 0.420 0.580 39 H 0.154 0.846 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 0.903 6.468 6.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.292 6.292 3 C 0.278 3.722 4 O -0.409 6.409 5 C 0.002 3.998 6 N -0.289 5.289 7 C -0.381 4.381 8 H 0.085 0.915 9 C -0.187 4.187 10 N -0.560 5.560 11 Si 0.725 3.275 12 H -0.195 1.195 13 H -0.232 1.232 14 H -0.182 1.182 15 C 0.048 3.952 16 C 0.040 3.960 17 C -0.303 4.303 18 C 0.364 3.636 19 O -0.408 6.408 20 O -0.196 6.196 21 C 0.095 3.905 22 C -0.196 4.196 23 C 0.130 3.870 24 O -0.309 6.309 25 C -0.189 4.189 26 C -0.033 4.033 27 C -0.165 4.165 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.105 0.895 32 H 0.132 0.868 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.193 0.807 37 H 0.179 0.821 38 H 0.281 0.719 39 H 0.172 0.828 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.736 1.171 7.182 7.481 hybrid contribution 0.430 -1.161 -0.759 1.452 sum 2.167 0.010 6.424 6.779 Atomic orbital electron populations 1.23452 0.75728 1.05269 1.02066 1.86553 1.24596 1.33891 1.84195 1.25848 0.93858 0.81158 0.71372 1.90568 1.67349 1.37285 1.45678 1.21300 0.85991 0.88206 1.04345 1.43840 1.73358 1.08646 1.03068 1.18607 1.30259 0.98544 0.90662 0.91456 1.25825 0.98104 0.99749 0.95037 1.69937 1.42830 1.42852 1.00344 0.86584 0.79962 0.81929 0.78978 1.19472 1.23209 1.18204 1.20342 0.89128 0.99148 0.86567 1.22761 0.97607 0.88223 0.87365 1.22320 0.96976 1.06858 1.04132 1.19473 0.83825 0.78808 0.81523 1.90903 1.84958 1.33476 1.31485 1.83427 1.42831 1.44865 1.48468 1.19065 0.94337 0.89103 0.88026 1.20774 0.98674 0.97882 1.02290 1.18194 0.87837 0.88602 0.92395 1.84680 1.41191 1.47556 1.57492 1.21429 0.92136 1.02700 1.02603 1.21181 1.00954 0.90291 0.90860 1.19220 0.92310 1.02628 1.02387 0.91800 0.93071 0.85166 0.89535 0.86751 0.92304 0.89113 0.89224 0.80692 0.82132 0.71865 0.82817 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.56 113.37 1.20 1.87 16 2 O -0.38 -12.01 10.56 -51.42 -0.54 -12.56 16 3 C 0.44 16.23 8.01 71.24 0.57 16.80 16 4 O -0.52 -21.87 16.13 21.98 0.35 -21.51 16 5 C 0.13 4.82 4.89 85.63 0.42 5.24 16 6 N -0.57 -22.36 1.55 -710.69 -1.10 -23.47 16 7 C -0.25 -11.67 8.01 84.03 0.67 -11.00 16 8 H 0.07 3.41 7.53 -2.91 -0.02 3.39 16 9 C 0.01 0.65 5.26 84.86 0.45 1.09 16 10 N -0.92 -49.79 13.97 21.65 0.30 -49.49 16 11 Si 0.90 39.65 25.18 68.60 1.73 41.38 16 12 H -0.27 -11.34 6.57 99.48 0.65 -10.69 16 13 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 14 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 15 C 0.17 5.53 5.34 85.63 0.46 5.98 16 16 C 0.04 1.43 5.66 -18.28 -0.10 1.33 16 17 C -0.28 -8.90 9.59 22.39 0.21 -8.68 16 18 C 0.51 18.45 7.89 68.50 0.54 18.99 16 19 O -0.52 -20.95 17.91 18.96 0.34 -20.61 16 20 O -0.28 -9.96 9.82 14.69 0.14 -9.82 16 21 C 0.14 4.44 6.76 22.98 0.16 4.60 16 22 C -0.18 -4.71 9.94 22.44 0.22 -4.49 16 23 C 0.18 4.28 6.70 22.61 0.15 4.43 16 24 O -0.49 -9.46 13.48 -90.73 -1.22 -10.68 16 25 C -0.17 -4.54 9.91 22.13 0.22 -4.33 16 26 C -0.01 -0.46 8.75 22.28 0.19 -0.27 16 27 C -0.16 -5.35 5.87 -20.12 -0.12 -5.47 16 28 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 29 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 30 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.09 3.54 3.61 -2.39 -0.01 3.53 16 32 H 0.11 3.54 8.12 -2.39 -0.02 3.52 16 33 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 34 H 0.09 2.80 6.96 -2.38 -0.02 2.78 16 35 H 0.09 2.53 7.99 -2.39 -0.02 2.51 16 36 H 0.18 4.70 8.05 -2.91 -0.02 4.67 16 37 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 38 H 0.42 4.04 9.06 -74.06 -0.67 3.37 16 39 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 40 H 0.15 4.96 4.86 -2.91 -0.01 4.95 16 Total: -1.00 -66.89 347.53 5.64 -61.26 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.40 Total: 19.39 kcal Atomic # 6 Polarization: 20.86 SS G_CDS: 5.24 Total: 26.10 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -0.80 Total: -72.95 kcal Atomic # 8 Polarization: -74.25 SS G_CDS: -0.93 Total: -75.18 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 1.73 Total: 41.38 kcal Total: -66.89 5.64 -61.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182403645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.704 kcal (2) G-P(sol) polarization free energy of solvation -66.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.94 seconds