Wall clock time and date at job start Tue Mar 31 2020 17:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34222 * 117.00267 * 2 1 4 4 O 1.20833 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00151 * 179.97438 * 3 2 1 6 6 N 1.46508 * 109.47239 * 185.18907 * 5 3 2 7 7 C 1.37095 * 120.00100 * 96.68634 * 6 5 3 8 8 H 1.08002 * 119.99723 * 225.34987 * 7 6 5 9 9 C 1.38946 * 120.00443 * 45.34344 * 7 6 5 10 10 N 1.31402 * 120.00487 * 208.21090 * 9 7 6 11 11 Si 1.86805 * 119.99704 * 28.20536 * 9 7 6 12 12 H 1.48500 * 109.46782 * 85.03947 * 11 9 7 13 13 H 1.48495 * 109.47005 * 205.03773 * 11 9 7 14 14 H 1.48496 * 109.47325 * 325.04151 * 11 9 7 15 15 C 1.34780 * 119.99559 * 276.41455 * 6 5 3 16 16 O 1.21287 * 120.00170 * 359.97438 * 15 6 5 17 17 C 1.50703 * 119.99442 * 180.02562 * 15 6 5 18 18 C 1.53007 * 109.46546 * 185.81100 * 17 15 6 19 19 C 1.52999 * 115.54907 * 280.56752 * 18 17 15 20 20 S 1.81400 * 109.47274 * 292.48089 * 19 18 17 21 21 C 1.81400 * 101.92102 * 186.72747 * 20 19 18 22 22 O 1.42099 * 108.57895 * 301.21595 * 20 19 18 23 23 O 1.42107 * 108.57418 * 72.24085 * 20 19 18 24 24 C 1.53000 * 117.49375 * 134.86362 * 18 17 15 25 25 C 1.53001 * 117.49607 * 66.24066 * 18 17 15 26 26 H 1.08999 * 109.47376 * 60.00282 * 1 2 3 27 27 H 1.09001 * 109.47506 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47039 * 299.99766 * 1 2 3 29 29 H 1.08999 * 109.47365 * 65.18885 * 5 3 2 30 30 H 1.08995 * 109.47382 * 305.18539 * 5 3 2 31 31 H 0.97000 * 120.00603 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.46828 * 305.80601 * 17 15 6 33 33 H 1.08996 * 109.47638 * 65.81395 * 17 15 6 34 34 H 1.08995 * 109.46923 * 52.48856 * 19 18 17 35 35 H 1.09006 * 109.46687 * 172.48041 * 19 18 17 36 36 H 1.08997 * 109.46921 * 60.00436 * 21 20 19 37 37 H 1.08997 * 109.47122 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.46909 * 300.00500 * 21 20 19 39 39 H 1.09000 * 117.50456 * 359.97438 * 24 18 17 40 40 H 1.08997 * 117.49755 * 145.02473 * 24 18 17 41 41 H 1.09006 * 117.49584 * 214.97094 * 25 18 17 42 42 H 1.08999 * 117.50096 * 359.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9820 2.6740 0.1254 7 6 4.3142 3.1835 1.3541 8 1 3.9350 4.1476 1.6593 9 6 5.1384 2.4595 2.2067 10 7 5.0336 2.6112 3.5077 11 14 6.3957 1.2703 1.5034 12 1 7.6380 2.0084 1.1615 13 1 6.7034 0.2228 2.5100 14 1 5.8451 0.6343 0.2796 15 6 4.0431 3.4590 -0.9686 16 8 3.7544 3.0067 -2.0563 17 6 4.4713 4.8982 -0.8402 18 6 4.3168 5.5985 -2.1918 19 6 5.4351 5.3363 -3.2025 20 16 6.9736 6.0949 -2.6125 21 6 8.0807 5.8465 -4.0279 22 8 6.7563 7.4894 -2.4470 23 8 7.4622 5.3339 -1.5164 24 6 3.6677 6.9840 -2.1993 25 6 2.8985 5.7758 -2.7375 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9521 0.8629 -0.9320 30 1 3.9598 0.7026 0.8407 31 1 5.6093 2.1061 4.1030 32 1 3.8479 5.3979 -0.0987 33 1 5.5142 4.9404 -0.5263 34 1 5.5793 4.2617 -3.3141 35 1 5.1630 5.7682 -4.1656 36 1 7.6669 6.3448 -4.9046 37 1 9.0609 6.2653 -3.8003 38 1 8.1794 4.7798 -4.2290 39 1 3.3503 7.3964 -1.2416 40 1 4.0373 7.7090 -2.9244 41 1 2.7621 5.7061 -3.8168 42 1 2.0755 5.3931 -2.1340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352445896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:31 Heat of formation + Delta-G solvation = -143.772115 kcal Electronic energy + Delta-G solvation = -28316.826879 eV Core-core repulsion = 24198.768302 eV Total energy + Delta-G solvation = -4118.058577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -40.00420 -39.08288 -37.38866 -36.79702 -35.82944 -35.77590 -34.73020 -32.04175 -29.97875 -29.88816 -28.87775 -27.80517 -26.22726 -24.64047 -22.17332 -21.07640 -19.76162 -18.98974 -18.56396 -17.39397 -17.11028 -16.56674 -16.27688 -16.02761 -15.93794 -15.74680 -15.33621 -15.14403 -14.76397 -14.33021 -13.77179 -13.76755 -13.36116 -13.28453 -13.06289 -12.96390 -12.80724 -12.48420 -12.24701 -11.93530 -11.80625 -11.74079 -11.51236 -11.36058 -11.27213 -11.07364 -11.06399 -10.90267 -10.83322 -10.71525 -10.33288 -10.09975 -10.02584 -9.79379 -9.40903 -9.16913 -8.61055 -7.83288 -6.56908 -4.19548 0.05751 2.84565 2.91101 3.04863 3.13342 3.22004 3.31752 3.68531 3.81116 3.92016 4.06424 4.11562 4.42427 4.63673 4.70482 4.72151 4.88176 5.00274 5.12533 5.23712 5.37673 5.45012 5.46567 5.49092 5.50544 5.73509 5.80385 5.83222 5.94031 6.03175 6.08392 6.22032 6.25902 6.43065 6.46343 6.57651 6.88484 7.23037 7.99240 8.22473 8.43168 8.91242 9.23567 9.58266 10.53311 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.012399 B = 0.004950 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.660214 B = 5654.718802 C = 6910.968024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.449 3.551 4 O -0.494 6.494 5 C 0.121 3.879 6 N -0.450 5.450 7 C -0.358 4.358 8 H 0.102 0.898 9 C 0.078 3.922 10 N -0.841 5.841 11 Si 0.853 3.147 12 H -0.263 1.263 13 H -0.281 1.281 14 H -0.257 1.257 15 C 0.504 3.496 16 O -0.586 6.586 17 C -0.105 4.105 18 C -0.103 4.103 19 C -0.558 4.558 20 S 2.408 3.592 21 C -0.664 4.664 22 O -0.937 6.937 23 O -0.927 6.927 24 C -0.173 4.173 25 C -0.137 4.137 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.277 0.723 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.144 0.856 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.866 1.627 -12.608 12.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.287 6.287 3 C 0.290 3.710 4 O -0.380 6.380 5 C -0.004 4.004 6 N -0.172 5.172 7 C -0.484 4.484 8 H 0.119 0.881 9 C -0.132 4.132 10 N -0.473 5.473 11 Si 0.677 3.323 12 H -0.188 1.188 13 H -0.207 1.207 14 H -0.181 1.181 15 C 0.295 3.705 16 O -0.470 6.470 17 C -0.144 4.144 18 C -0.105 4.105 19 C -0.688 4.688 20 S 2.591 3.409 21 C -0.812 4.812 22 O -0.934 6.934 23 O -0.924 6.924 24 C -0.210 4.210 25 C -0.175 4.175 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.129 0.871 34 H 0.162 0.838 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.769 2.073 -12.113 12.313 hybrid contribution 0.331 -1.089 -0.805 1.394 sum 1.101 0.984 -12.918 13.002 Atomic orbital electron populations 1.23111 0.77759 1.02727 1.02140 1.86528 1.22522 1.34720 1.84951 1.24978 0.93106 0.81062 0.71898 1.90590 1.66744 1.36351 1.44278 1.21457 0.85865 0.88591 1.04531 1.43296 1.58316 1.07746 1.07809 1.18932 1.31127 1.07669 0.90681 0.88061 1.25432 0.96371 0.96840 0.94550 1.69872 1.35221 1.39770 1.02468 0.87311 0.83990 0.80989 0.80038 1.18827 1.20675 1.18098 1.20372 0.78570 0.88303 0.83241 1.90516 1.53567 1.75858 1.27032 1.21249 1.05524 0.93483 0.94155 1.20522 0.94257 1.00124 0.95563 1.29787 1.16382 1.14610 1.07971 1.08320 0.78526 0.76352 0.77735 1.30358 1.17423 1.11804 1.21646 1.93568 1.84989 1.29869 1.85007 1.93649 1.78947 1.72527 1.47252 1.23331 1.03557 0.90236 1.03907 1.22861 0.93716 1.00200 1.00773 0.92474 0.88827 0.92261 0.87698 0.87319 0.91261 0.88219 0.87121 0.83833 0.85500 0.85692 0.85543 0.85404 0.87922 0.88016 0.88950 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.86 10.56 -39.24 -0.41 -7.28 16 3 C 0.45 9.82 7.99 36.00 0.29 10.11 16 4 O -0.49 -12.05 15.95 -18.76 -0.30 -12.34 16 5 C 0.12 2.68 4.05 -5.19 -0.02 2.66 16 6 N -0.45 -10.88 1.58 -116.09 -0.18 -11.06 16 7 C -0.36 -9.34 8.77 -14.94 -0.13 -9.48 16 8 H 0.10 2.81 7.35 -52.49 -0.39 2.42 16 9 C 0.08 2.04 5.05 -17.47 -0.09 1.95 16 10 N -0.84 -22.87 13.96 55.50 0.77 -22.09 16 11 Si 0.85 19.44 26.68 -169.99 -4.54 14.90 16 12 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.26 -5.48 5.60 56.52 0.32 -5.16 16 15 C 0.50 11.56 7.16 -10.98 -0.08 11.49 16 16 O -0.59 -13.62 14.61 5.55 0.08 -13.54 16 17 C -0.10 -2.11 4.45 -27.88 -0.12 -2.23 16 18 C -0.10 -1.68 0.94 -154.51 -0.15 -1.83 16 19 C -0.56 -7.21 5.59 37.16 0.21 -7.00 16 20 S 2.41 31.12 5.17 -107.50 -0.56 30.56 16 21 C -0.66 -5.36 10.62 101.05 1.07 -4.28 16 22 O -0.94 -14.20 17.66 -57.83 -1.02 -15.22 16 23 O -0.93 -16.32 16.22 -57.83 -0.94 -17.26 16 24 C -0.17 -2.45 9.50 -26.73 -0.25 -2.70 16 25 C -0.14 -2.10 9.22 -26.73 -0.25 -2.35 16 26 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.11 2.16 7.56 -51.93 -0.39 1.77 16 30 H 0.11 2.34 5.21 -51.93 -0.27 2.07 16 31 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.10 1.99 7.29 -51.93 -0.38 1.62 16 33 H 0.11 2.29 5.91 -51.93 -0.31 1.99 16 34 H 0.14 1.91 7.51 -51.93 -0.39 1.52 16 35 H 0.13 1.14 8.08 -51.92 -0.42 0.72 16 36 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.13 0.86 8.14 -51.92 -0.42 0.44 16 39 H 0.10 1.42 8.09 -51.93 -0.42 1.00 16 40 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -35.40 364.66 -6.04 -41.43 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.99 Total: 8.47 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 1.55 Total: -2.07 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.59 Total: -33.16 kcal Atomic # 8 Polarization: -63.05 SS G_CDS: -2.59 Total: -65.64 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.54 Total: 14.90 kcal Atomic # 16 Polarization: 31.12 SS G_CDS: -0.56 Total: 30.56 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.40 -6.04 -41.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352445896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.338 kcal (2) G-P(sol) polarization free energy of solvation -35.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds