Wall clock time and date at job start Tue Mar 31 2020 17:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34222 * 117.00267 * 2 1 4 4 O 1.20833 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00151 * 179.97438 * 3 2 1 6 6 N 1.46508 * 109.47239 * 185.18907 * 5 3 2 7 7 C 1.37095 * 120.00100 * 96.68634 * 6 5 3 8 8 H 1.08002 * 119.99723 * 225.34987 * 7 6 5 9 9 C 1.38946 * 120.00443 * 45.34344 * 7 6 5 10 10 N 1.31402 * 120.00487 * 208.21090 * 9 7 6 11 11 Si 1.86805 * 119.99704 * 28.20536 * 9 7 6 12 12 H 1.48500 * 109.46782 * 85.03947 * 11 9 7 13 13 H 1.48495 * 109.47005 * 205.03773 * 11 9 7 14 14 H 1.48496 * 109.47325 * 325.04151 * 11 9 7 15 15 C 1.34780 * 119.99559 * 276.41455 * 6 5 3 16 16 O 1.21287 * 120.00170 * 359.97438 * 15 6 5 17 17 C 1.50703 * 119.99442 * 180.02562 * 15 6 5 18 18 C 1.53007 * 109.46546 * 185.81100 * 17 15 6 19 19 C 1.52999 * 115.54907 * 280.56752 * 18 17 15 20 20 S 1.81400 * 109.47274 * 292.48089 * 19 18 17 21 21 C 1.81400 * 101.92102 * 186.72747 * 20 19 18 22 22 O 1.42099 * 108.57895 * 301.21595 * 20 19 18 23 23 O 1.42107 * 108.57418 * 72.24085 * 20 19 18 24 24 C 1.53000 * 117.49375 * 134.86362 * 18 17 15 25 25 C 1.53001 * 117.49607 * 66.24066 * 18 17 15 26 26 H 1.08999 * 109.47376 * 60.00282 * 1 2 3 27 27 H 1.09001 * 109.47506 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47039 * 299.99766 * 1 2 3 29 29 H 1.08999 * 109.47365 * 65.18885 * 5 3 2 30 30 H 1.08995 * 109.47382 * 305.18539 * 5 3 2 31 31 H 0.97000 * 120.00603 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.46828 * 305.80601 * 17 15 6 33 33 H 1.08996 * 109.47638 * 65.81395 * 17 15 6 34 34 H 1.08995 * 109.46923 * 52.48856 * 19 18 17 35 35 H 1.09006 * 109.46687 * 172.48041 * 19 18 17 36 36 H 1.08997 * 109.46921 * 60.00436 * 21 20 19 37 37 H 1.08997 * 109.47122 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.46909 * 300.00500 * 21 20 19 39 39 H 1.09000 * 117.50456 * 359.97438 * 24 18 17 40 40 H 1.08997 * 117.49755 * 145.02473 * 24 18 17 41 41 H 1.09006 * 117.49584 * 214.97094 * 25 18 17 42 42 H 1.08999 * 117.50096 * 359.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9820 2.6740 0.1254 7 6 4.3142 3.1835 1.3541 8 1 3.9350 4.1476 1.6593 9 6 5.1384 2.4595 2.2067 10 7 5.0336 2.6112 3.5077 11 14 6.3957 1.2703 1.5034 12 1 7.6380 2.0084 1.1615 13 1 6.7034 0.2228 2.5100 14 1 5.8451 0.6343 0.2796 15 6 4.0431 3.4590 -0.9686 16 8 3.7544 3.0067 -2.0563 17 6 4.4713 4.8982 -0.8402 18 6 4.3168 5.5985 -2.1918 19 6 5.4351 5.3363 -3.2025 20 16 6.9736 6.0949 -2.6125 21 6 8.0807 5.8465 -4.0279 22 8 6.7563 7.4894 -2.4470 23 8 7.4622 5.3339 -1.5164 24 6 3.6677 6.9840 -2.1993 25 6 2.8985 5.7758 -2.7375 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9521 0.8629 -0.9320 30 1 3.9598 0.7026 0.8407 31 1 5.6093 2.1061 4.1030 32 1 3.8479 5.3979 -0.0987 33 1 5.5142 4.9404 -0.5263 34 1 5.5793 4.2617 -3.3141 35 1 5.1630 5.7682 -4.1656 36 1 7.6669 6.3448 -4.9046 37 1 9.0609 6.2653 -3.8003 38 1 8.1794 4.7798 -4.2290 39 1 3.3503 7.3964 -1.2416 40 1 4.0373 7.7090 -2.9244 41 1 2.7621 5.7061 -3.8168 42 1 2.0755 5.3931 -2.1340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352445896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:27 Heat of formation + Delta-G solvation = -169.638398 kcal Electronic energy + Delta-G solvation = -28317.948525 eV Core-core repulsion = 24198.768302 eV Total energy + Delta-G solvation = -4119.180223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 4.00 seconds Orbital eigenvalues (eV) -41.70727 -40.67978 -38.79941 -37.90158 -37.43511 -36.90998 -36.59661 -34.04052 -31.52407 -30.75553 -30.01361 -29.11777 -27.75677 -26.54309 -23.35967 -22.68962 -21.34590 -20.53536 -19.70714 -19.08988 -18.79353 -18.16321 -17.46936 -17.41484 -17.24651 -17.05271 -16.91497 -16.74387 -16.10285 -15.81707 -15.50515 -15.14275 -14.61789 -14.58628 -14.43354 -14.03966 -13.95879 -13.91454 -13.68155 -13.25025 -13.20932 -12.98708 -12.92934 -12.90672 -12.71699 -12.66049 -12.40347 -12.38501 -12.17930 -11.93573 -11.81123 -11.77689 -11.58675 -11.32599 -11.04869 -10.66088 -10.33059 -9.75785 -8.58896 -6.25075 -0.87605 1.17671 1.26728 1.37959 1.43882 1.51706 1.94268 2.01055 2.18953 2.48111 2.75651 2.85049 3.02317 3.16452 3.55259 3.72861 3.81579 3.93769 3.97978 4.09038 4.11959 4.20676 4.27772 4.29337 4.30924 4.42039 4.46593 4.62890 4.63857 4.78582 4.81974 4.91579 4.95626 5.04794 5.17196 5.26127 5.26989 5.34998 6.05042 6.13556 6.75034 6.91649 7.29588 7.67495 8.55551 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.012399 B = 0.004950 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.660214 B = 5654.718802 C = 6910.968024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.365 6.365 3 C 0.451 3.549 4 O -0.529 6.529 5 C 0.112 3.888 6 N -0.462 5.462 7 C -0.361 4.361 8 H 0.066 0.934 9 C 0.041 3.959 10 N -0.880 5.880 11 Si 0.906 3.094 12 H -0.275 1.275 13 H -0.266 1.266 14 H -0.233 1.233 15 C 0.500 3.500 16 O -0.588 6.588 17 C -0.106 4.106 18 C -0.126 4.126 19 C -0.556 4.556 20 S 2.399 3.601 21 C -0.635 4.635 22 O -0.969 6.969 23 O -0.989 6.989 24 C -0.158 4.158 25 C -0.138 4.138 26 H 0.058 0.942 27 H 0.140 0.860 28 H 0.054 0.946 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.283 0.717 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.140 0.860 35 H 0.174 0.826 36 H 0.162 0.838 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.095 0.905 40 H 0.130 0.870 41 H 0.119 0.881 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.584 0.522 -15.885 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.281 6.281 3 C 0.294 3.706 4 O -0.417 6.417 5 C -0.013 4.013 6 N -0.185 5.185 7 C -0.488 4.488 8 H 0.084 0.916 9 C -0.166 4.166 10 N -0.514 5.514 11 Si 0.727 3.273 12 H -0.200 1.200 13 H -0.191 1.191 14 H -0.156 1.156 15 C 0.292 3.708 16 O -0.472 6.472 17 C -0.146 4.146 18 C -0.128 4.128 19 C -0.685 4.685 20 S 2.587 3.413 21 C -0.788 4.788 22 O -0.966 6.966 23 O -0.986 6.986 24 C -0.195 4.195 25 C -0.176 4.176 26 H 0.077 0.923 27 H 0.158 0.842 28 H 0.073 0.927 29 H 0.141 0.859 30 H 0.132 0.868 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.158 0.842 35 H 0.191 0.809 36 H 0.180 0.820 37 H 0.158 0.842 38 H 0.167 0.833 39 H 0.114 0.886 40 H 0.148 0.852 41 H 0.137 0.863 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.438 0.945 -15.356 15.452 hybrid contribution 0.008 -0.747 0.161 0.764 sum 1.446 0.198 -15.195 15.265 Atomic orbital electron populations 1.23528 0.75072 1.05779 1.02051 1.86492 1.25003 1.32527 1.84113 1.24838 0.93118 0.81498 0.71184 1.90579 1.67425 1.37649 1.46041 1.21564 0.86583 0.87544 1.05573 1.43356 1.59082 1.08738 1.07283 1.18666 1.31667 1.06912 0.91560 0.91579 1.26008 0.97415 0.98672 0.94537 1.69923 1.36341 1.41532 1.03652 0.86457 0.80793 0.79356 0.80646 1.20041 1.19096 1.15601 1.20813 0.77932 0.89119 0.82976 1.90480 1.53615 1.76210 1.26899 1.21231 1.04247 0.92366 0.96723 1.20588 0.96244 1.01384 0.94567 1.29783 1.15049 1.14749 1.08967 1.08159 0.79116 0.75137 0.78876 1.30086 1.15844 1.13994 1.18829 1.93521 1.85687 1.31054 1.86382 1.93576 1.79906 1.73343 1.51766 1.23425 1.01991 0.89856 1.04218 1.22862 0.92242 1.00715 1.01796 0.92294 0.84173 0.92740 0.85929 0.86800 0.90672 0.89848 0.88263 0.84221 0.80869 0.81989 0.84185 0.83319 0.88643 0.85223 0.86251 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.56 113.37 1.20 1.97 16 2 O -0.37 -13.01 10.56 -51.34 -0.54 -13.55 16 3 C 0.45 19.71 7.99 71.24 0.57 20.28 16 4 O -0.53 -26.29 15.95 21.94 0.35 -25.94 16 5 C 0.11 4.94 4.05 85.63 0.35 5.28 16 6 N -0.46 -22.91 1.58 -639.59 -1.01 -23.92 16 7 C -0.36 -19.78 8.77 84.04 0.74 -19.05 16 8 H 0.07 3.99 7.35 -2.91 -0.02 3.97 16 9 C 0.04 2.18 5.05 84.93 0.43 2.61 16 10 N -0.88 -49.43 13.96 21.66 0.30 -49.13 16 11 Si 0.91 40.18 26.68 68.60 1.83 42.01 16 12 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 14 H -0.23 -9.34 5.60 99.48 0.56 -8.78 16 15 C 0.50 23.51 7.16 87.66 0.63 24.14 16 16 O -0.59 -27.28 14.61 -3.05 -0.04 -27.32 16 17 C -0.11 -4.49 4.45 29.85 0.13 -4.36 16 18 C -0.13 -4.10 0.94 -52.18 -0.05 -4.15 16 19 C -0.56 -13.20 5.59 71.98 0.40 -12.79 16 20 S 2.40 59.03 5.17 -56.49 -0.29 58.74 16 21 C -0.63 -7.42 10.62 113.37 1.20 -6.21 16 22 O -0.97 -28.53 17.66 -127.37 -2.25 -30.78 16 23 O -0.99 -35.72 16.22 -127.37 -2.07 -37.78 16 24 C -0.16 -4.36 9.50 30.60 0.29 -4.06 16 25 C -0.14 -4.13 9.22 30.60 0.28 -3.85 16 26 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 27 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 29 H 0.12 4.89 7.56 -2.39 -0.02 4.87 16 30 H 0.11 4.83 5.21 -2.39 -0.01 4.81 16 31 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 32 H 0.08 3.67 7.29 -2.39 -0.02 3.65 16 33 H 0.10 4.41 5.91 -2.39 -0.01 4.40 16 34 H 0.14 3.45 7.51 -2.39 -0.02 3.43 16 35 H 0.17 2.34 8.08 -2.39 -0.02 2.32 16 36 H 0.16 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 2.72 8.09 -2.39 -0.02 2.71 16 40 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.12 2.88 8.14 -2.38 -0.02 2.86 16 42 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -81.26 364.66 3.33 -77.93 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.89 Total: 29.94 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 6.17 Total: -0.20 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -0.71 Total: -73.05 kcal Atomic # 8 Polarization: -130.82 SS G_CDS: -4.55 Total: -135.38 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 1.83 Total: 42.01 kcal Atomic # 16 Polarization: 59.03 SS G_CDS: -0.29 Total: 58.74 kcal Total: -81.26 3.33 -77.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352445896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.707 kcal (2) G-P(sol) polarization free energy of solvation -81.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.00 seconds