Wall clock time and date at job start Tue Mar 31 2020 16:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34220 * 117.00113 * 2 1 4 4 O 1.20827 * 120.00371 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00412 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.53725 * 61.15841 * 5 3 2 7 7 C 1.54270 * 110.48466 * 298.54902 * 5 3 2 8 8 C 1.53869 * 106.63967 * 217.73352 * 7 5 3 9 9 C 1.54268 * 106.60115 * 359.97438 * 8 7 5 10 10 C 1.54895 * 104.19476 * 23.60777 * 9 8 7 11 11 H 1.09001 * 110.75082 * 80.37254 * 10 9 8 12 12 S 1.81398 * 110.75734 * 203.55930 * 10 9 8 13 13 O 1.42102 * 110.53912 * 55.17225 * 12 10 9 14 14 O 1.42097 * 110.54258 * 191.92220 * 12 10 9 15 15 N 1.65601 * 104.45031 * 303.54807 * 12 10 9 16 16 C 1.47062 * 136.05541 * 269.62860 * 15 12 10 17 17 C 1.53761 * 87.88617 * 152.96200 * 16 15 12 18 18 O 1.42896 * 114.57686 * 272.66116 * 17 16 15 19 19 C 1.50702 * 114.08627 * 139.77819 * 17 16 15 20 20 H 1.07998 * 120.00074 * 266.56502 * 19 17 16 21 21 C 1.37874 * 119.99975 * 86.55987 * 19 17 16 22 22 N 1.31516 * 120.00015 * 0.02562 * 21 19 17 23 23 Si 1.86804 * 120.00138 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46918 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47209 * 120.00138 * 23 21 19 26 26 H 1.48499 * 109.47198 * 240.00557 * 23 21 19 27 27 C 1.47063 * 136.05701 * 89.99975 * 15 12 10 28 28 H 1.09000 * 109.47305 * 299.99766 * 1 2 3 29 29 H 1.08994 * 109.47551 * 59.99851 * 1 2 3 30 30 H 1.09007 * 109.47319 * 179.97438 * 1 2 3 31 31 H 1.09002 * 110.03399 * 98.42351 * 7 5 3 32 32 H 1.08995 * 110.02943 * 337.04251 * 7 5 3 33 33 H 1.08999 * 110.03405 * 119.26051 * 8 7 5 34 34 H 1.08996 * 110.03529 * 240.68999 * 8 7 5 35 35 H 1.08997 * 110.48788 * 142.28685 * 9 8 7 36 36 H 1.09000 * 110.48806 * 264.79985 * 9 8 7 37 37 H 1.08998 * 113.46960 * 267.69579 * 16 15 12 38 38 H 1.08998 * 113.46980 * 38.13602 * 16 15 12 39 39 H 0.96698 * 114.00411 * 273.67390 * 18 17 16 40 40 H 0.97002 * 119.99924 * 179.97438 * 22 21 19 41 41 H 1.09002 * 113.46882 * 321.86350 * 27 15 12 42 42 H 1.09000 * 113.46911 * 92.30354 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9736 0.8034 -0.8949 7 6 4.1421 0.6132 1.2685 8 6 5.3456 1.4676 1.7035 9 6 5.4603 2.6191 0.6834 10 6 4.0332 2.7493 0.0954 11 1 3.3885 3.3150 0.7681 12 16 4.0819 3.5216 -1.5452 13 8 4.9517 2.8029 -2.4090 14 8 2.7741 3.8888 -1.9625 15 7 4.8528 4.9664 -1.2992 16 6 4.4469 6.3396 -0.9640 17 6 5.8331 6.5333 -0.3276 18 8 5.9188 6.1362 1.0424 19 6 6.4505 7.8815 -0.5967 20 1 7.1184 8.0118 -1.4353 21 6 6.1624 8.9485 0.2275 22 7 5.3493 8.7897 1.2489 23 14 6.9271 10.6198 -0.1065 24 1 7.7979 10.5349 -1.3064 25 1 5.8528 11.6170 -0.3446 26 1 7.7381 11.0363 1.0657 27 6 6.2441 5.4423 -1.3261 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.4669 -0.4031 1.0452 32 1 3.3894 0.5996 2.0567 33 1 5.1766 1.8693 2.7026 34 1 6.2544 0.8661 1.6913 35 1 5.7532 3.5429 1.1822 36 1 6.1758 2.3658 -0.0990 37 1 4.2790 6.9683 -1.8385 38 1 3.6277 6.3872 -0.2465 39 1 5.6593 6.8257 1.6688 40 1 5.1470 9.5403 1.8291 41 1 6.9561 4.7255 -0.9170 42 1 6.5500 5.8344 -2.2960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358912064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:03 Heat of formation + Delta-G solvation = -167.920433 kcal Electronic energy + Delta-G solvation = -28478.017433 eV Core-core repulsion = 24358.911707 eV Total energy + Delta-G solvation = -4119.105726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 5.65 seconds Orbital eigenvalues (eV) -40.81682 -38.61190 -37.98447 -36.71603 -36.36609 -35.53091 -33.96281 -32.14883 -30.21028 -29.25079 -27.83885 -27.51300 -25.04455 -24.67007 -22.94308 -20.89404 -20.47940 -19.54289 -18.37626 -17.91011 -17.50586 -17.09433 -16.89503 -16.46630 -16.19169 -15.55011 -15.06177 -14.71618 -14.28027 -14.11714 -13.84741 -13.71763 -13.43526 -13.16106 -12.99043 -12.97385 -12.43691 -12.25919 -12.10680 -11.72857 -11.66719 -11.60679 -11.55656 -11.50346 -11.35797 -11.17475 -11.07075 -10.96486 -10.75671 -10.71971 -10.45879 -10.40593 -10.32496 -10.19068 -9.27868 -8.76823 -8.49628 -8.02676 -6.36387 -4.45392 0.61593 2.01929 2.43588 3.05161 3.16200 3.25864 3.29643 3.88626 4.19742 4.21712 4.25034 4.55628 4.56855 4.78376 4.88928 4.92366 5.00763 5.09903 5.11093 5.18782 5.30607 5.34010 5.46490 5.50364 5.73559 5.85894 5.93131 6.06601 6.13844 6.14682 6.16557 6.32059 6.34508 6.45015 6.71187 6.78093 7.06295 7.53616 7.55262 7.69857 7.87260 8.57988 9.25087 9.49776 10.70061 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.020820 B = 0.003632 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.541450 B = 7708.168962 C = 7881.977530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.453 3.547 4 O -0.479 6.479 5 C -0.070 4.070 6 H 0.122 0.878 7 C -0.100 4.100 8 C -0.116 4.116 9 C -0.100 4.100 10 C -0.584 4.584 11 H 0.151 0.849 12 S 2.633 3.367 13 O -0.966 6.966 14 O -0.950 6.950 15 N -1.039 6.039 16 C 0.106 3.894 17 C 0.240 3.760 18 O -0.573 6.573 19 C -0.532 4.532 20 H 0.072 0.928 21 C 0.071 3.929 22 N -0.899 5.899 23 Si 0.907 3.093 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.135 3.865 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.394 0.606 40 H 0.272 0.728 41 H 0.064 0.936 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.249 -15.376 1.811 15.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.273 6.273 3 C 0.294 3.706 4 O -0.364 6.364 5 C -0.090 4.090 6 H 0.140 0.860 7 C -0.139 4.139 8 C -0.154 4.154 9 C -0.139 4.139 10 C -0.691 4.691 11 H 0.169 0.831 12 S 2.728 3.272 13 O -0.956 6.956 14 O -0.940 6.940 15 N -0.879 5.879 16 C -0.019 4.019 17 C 0.196 3.804 18 O -0.386 6.386 19 C -0.571 4.571 20 H 0.091 0.909 21 C -0.131 4.131 22 N -0.540 5.540 23 Si 0.734 3.266 24 H -0.195 1.195 25 H -0.208 1.208 26 H -0.207 1.207 27 C 0.010 3.990 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.127 0.873 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.251 0.749 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.853 -16.079 0.843 16.556 hybrid contribution -0.313 1.429 0.734 1.637 sum -4.166 -14.651 1.577 15.313 Atomic orbital electron populations 1.23321 0.76127 1.03702 1.02964 1.86476 1.23576 1.32999 1.84290 1.23593 0.91711 0.81892 0.73439 1.90802 1.66612 1.35834 1.43154 1.21685 0.87770 0.95518 1.04056 0.86049 1.22050 0.98070 0.99517 0.94250 1.22095 0.97562 0.96189 0.99579 1.22199 0.90734 1.01584 0.99336 1.31707 1.06375 1.04077 1.26969 0.83104 1.04149 0.73559 0.73268 0.76192 1.93535 1.67024 1.73662 1.61419 1.93581 1.39443 1.81442 1.79545 1.59635 1.20218 1.21355 1.86687 1.23677 1.02204 0.77106 0.98940 1.19753 0.89477 0.90525 0.80600 1.85935 1.90446 1.45820 1.16448 1.21559 1.28911 0.93231 1.13373 0.90937 1.25068 0.93885 0.99698 0.94438 1.69262 1.35298 1.32788 1.16618 0.86294 0.79111 0.82687 0.78482 1.19452 1.20754 1.20741 1.22814 0.80981 0.95540 0.99663 0.91731 0.91568 0.87971 0.89870 0.90922 0.90818 0.90708 0.87267 0.90280 0.90362 0.92046 0.74914 0.91724 0.91780 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.33 10.54 -39.23 -0.41 -4.74 16 3 C 0.45 6.62 7.12 36.01 0.26 6.88 16 4 O -0.48 -8.60 14.96 -20.44 -0.31 -8.91 16 5 C -0.07 -0.92 2.83 -90.07 -0.26 -1.17 16 6 H 0.12 1.44 7.96 -51.93 -0.41 1.02 16 7 C -0.10 -1.02 6.34 -25.61 -0.16 -1.19 16 8 C -0.12 -1.23 6.80 -25.62 -0.17 -1.40 16 9 C -0.10 -1.38 6.15 -25.07 -0.15 -1.53 16 10 C -0.58 -9.06 2.64 -24.70 -0.07 -9.12 16 11 H 0.15 2.44 7.53 -51.93 -0.39 2.05 16 12 S 2.63 50.60 5.48 -107.50 -0.59 50.02 16 13 O -0.97 -19.41 17.75 -57.54 -1.02 -20.43 16 14 O -0.95 -21.24 17.52 -59.64 -1.04 -22.29 16 15 N -1.04 -21.14 3.96 -125.03 -0.49 -21.64 16 16 C 0.11 2.36 8.13 -8.37 -0.07 2.29 16 17 C 0.24 5.49 1.59 -91.12 -0.14 5.35 16 18 O -0.57 -13.32 13.06 -35.23 -0.46 -13.78 16 19 C -0.53 -13.03 8.68 -34.44 -0.30 -13.33 16 20 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 21 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 22 N -0.90 -22.48 11.01 55.43 0.61 -21.87 16 23 Si 0.91 19.33 29.54 -169.99 -5.02 14.31 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 27 C 0.14 2.73 8.10 -8.51 -0.07 2.66 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 29 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.71 7.83 -51.93 -0.41 0.30 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.11 1.67 7.64 -51.93 -0.40 1.27 16 36 H 0.08 1.05 7.84 -51.93 -0.41 0.64 16 37 H 0.08 1.71 8.10 -51.93 -0.42 1.29 16 38 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.39 9.61 6.32 45.56 0.29 9.90 16 40 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -30.82 362.04 -8.94 -39.76 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -5.49 Total: 11.66 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -0.17 Total: -7.54 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.12 Total: -43.51 kcal Atomic # 8 Polarization: -66.90 SS G_CDS: -3.25 Total: -70.15 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: 50.60 SS G_CDS: -0.59 Total: 50.02 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.82 -8.94 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358912064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.159 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.66 seconds