Wall clock time and date at job start Tue Mar 31 2020 16:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34220 * 117.00113 * 2 1 4 4 O 1.20827 * 120.00371 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00412 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.53725 * 61.15841 * 5 3 2 7 7 C 1.54270 * 110.48466 * 298.54902 * 5 3 2 8 8 C 1.53869 * 106.63967 * 217.73352 * 7 5 3 9 9 C 1.54268 * 106.60115 * 359.97438 * 8 7 5 10 10 C 1.54895 * 104.19476 * 23.60777 * 9 8 7 11 11 H 1.09001 * 110.75082 * 80.37254 * 10 9 8 12 12 S 1.81398 * 110.75734 * 203.55930 * 10 9 8 13 13 O 1.42102 * 110.53912 * 55.17225 * 12 10 9 14 14 O 1.42097 * 110.54258 * 191.92220 * 12 10 9 15 15 N 1.65601 * 104.45031 * 303.54807 * 12 10 9 16 16 C 1.47062 * 136.05541 * 269.62860 * 15 12 10 17 17 C 1.53761 * 87.88617 * 152.96200 * 16 15 12 18 18 O 1.42896 * 114.57686 * 272.66116 * 17 16 15 19 19 C 1.50702 * 114.08627 * 139.77819 * 17 16 15 20 20 H 1.07998 * 120.00074 * 266.56502 * 19 17 16 21 21 C 1.37874 * 119.99975 * 86.55987 * 19 17 16 22 22 N 1.31516 * 120.00015 * 0.02562 * 21 19 17 23 23 Si 1.86804 * 120.00138 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46918 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47209 * 120.00138 * 23 21 19 26 26 H 1.48499 * 109.47198 * 240.00557 * 23 21 19 27 27 C 1.47063 * 136.05701 * 89.99975 * 15 12 10 28 28 H 1.09000 * 109.47305 * 299.99766 * 1 2 3 29 29 H 1.08994 * 109.47551 * 59.99851 * 1 2 3 30 30 H 1.09007 * 109.47319 * 179.97438 * 1 2 3 31 31 H 1.09002 * 110.03399 * 98.42351 * 7 5 3 32 32 H 1.08995 * 110.02943 * 337.04251 * 7 5 3 33 33 H 1.08999 * 110.03405 * 119.26051 * 8 7 5 34 34 H 1.08996 * 110.03529 * 240.68999 * 8 7 5 35 35 H 1.08997 * 110.48788 * 142.28685 * 9 8 7 36 36 H 1.09000 * 110.48806 * 264.79985 * 9 8 7 37 37 H 1.08998 * 113.46960 * 267.69579 * 16 15 12 38 38 H 1.08998 * 113.46980 * 38.13602 * 16 15 12 39 39 H 0.96698 * 114.00411 * 273.67390 * 18 17 16 40 40 H 0.97002 * 119.99924 * 179.97438 * 22 21 19 41 41 H 1.09002 * 113.46882 * 321.86350 * 27 15 12 42 42 H 1.09000 * 113.46911 * 92.30354 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9736 0.8034 -0.8949 7 6 4.1421 0.6132 1.2685 8 6 5.3456 1.4676 1.7035 9 6 5.4603 2.6191 0.6834 10 6 4.0332 2.7493 0.0954 11 1 3.3885 3.3150 0.7681 12 16 4.0819 3.5216 -1.5452 13 8 4.9517 2.8029 -2.4090 14 8 2.7741 3.8888 -1.9625 15 7 4.8528 4.9664 -1.2992 16 6 4.4469 6.3396 -0.9640 17 6 5.8331 6.5333 -0.3276 18 8 5.9188 6.1362 1.0424 19 6 6.4505 7.8815 -0.5967 20 1 7.1184 8.0118 -1.4353 21 6 6.1624 8.9485 0.2275 22 7 5.3493 8.7897 1.2489 23 14 6.9271 10.6198 -0.1065 24 1 7.7979 10.5349 -1.3064 25 1 5.8528 11.6170 -0.3446 26 1 7.7381 11.0363 1.0657 27 6 6.2441 5.4423 -1.3261 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.4669 -0.4031 1.0452 32 1 3.3894 0.5996 2.0567 33 1 5.1766 1.8693 2.7026 34 1 6.2544 0.8661 1.6913 35 1 5.7532 3.5429 1.1822 36 1 6.1758 2.3658 -0.0990 37 1 4.2790 6.9683 -1.8385 38 1 3.6277 6.3872 -0.2465 39 1 5.6593 6.8257 1.6688 40 1 5.1470 9.5403 1.8291 41 1 6.9561 4.7255 -0.9170 42 1 6.5500 5.8344 -2.2960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358912064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:59 Heat of formation + Delta-G solvation = -190.897833 kcal Electronic energy + Delta-G solvation = -28479.013808 eV Core-core repulsion = 24358.911707 eV Total energy + Delta-G solvation = -4120.102101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.90660 -40.33647 -39.02048 -38.24676 -37.52827 -37.15357 -35.76759 -34.02597 -31.22650 -30.30693 -29.55378 -28.36454 -26.75076 -26.46596 -24.00634 -21.99685 -21.60862 -21.10512 -19.88540 -19.44583 -18.92335 -18.26173 -18.18852 -17.98892 -17.34938 -17.17120 -16.80008 -15.98937 -15.71787 -15.43354 -15.19063 -14.92487 -14.79920 -14.67042 -14.42722 -14.08580 -13.85119 -13.49572 -13.39833 -13.34168 -13.27559 -13.25377 -13.14830 -12.79859 -12.55524 -12.50056 -12.31453 -12.23248 -12.16185 -12.05543 -11.91680 -11.78535 -11.64821 -11.31671 -11.05510 -10.60344 -10.23365 -9.77039 -8.22267 -6.37798 -0.88925 0.90674 1.41818 1.46882 1.51344 1.55365 1.61981 2.42957 2.62932 2.84374 2.91544 3.03186 3.32208 3.57351 3.70521 3.77841 4.00312 4.17103 4.24367 4.25670 4.26403 4.27958 4.32028 4.43886 4.59311 4.64582 4.68790 4.72885 4.84576 4.96924 4.97418 5.03934 5.11023 5.16111 5.19065 5.27896 5.37517 5.73489 5.87127 6.02132 6.47572 6.68987 7.35433 7.57933 8.83096 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.020820 B = 0.003632 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.541450 B = 7708.168962 C = 7881.977530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.349 6.349 3 C 0.452 3.548 4 O -0.522 6.522 5 C -0.076 4.076 6 H 0.139 0.861 7 C -0.093 4.093 8 C -0.110 4.110 9 C -0.103 4.103 10 C -0.564 4.564 11 H 0.142 0.858 12 S 2.628 3.372 13 O -0.977 6.977 14 O -0.990 6.990 15 N -1.041 6.041 16 C 0.105 3.895 17 C 0.227 3.773 18 O -0.572 6.572 19 C -0.550 4.550 20 H 0.074 0.926 21 C 0.031 3.969 22 N -0.919 5.919 23 Si 0.966 3.034 24 H -0.266 1.266 25 H -0.284 1.284 26 H -0.279 1.279 27 C 0.138 3.862 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.143 0.857 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.387 0.613 40 H 0.274 0.726 41 H 0.083 0.917 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 -17.416 2.476 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.265 6.265 3 C 0.295 3.705 4 O -0.411 6.411 5 C -0.097 4.097 6 H 0.156 0.844 7 C -0.131 4.131 8 C -0.148 4.148 9 C -0.141 4.141 10 C -0.677 4.677 11 H 0.160 0.840 12 S 2.729 3.271 13 O -0.968 6.968 14 O -0.980 6.980 15 N -0.880 5.880 16 C -0.021 4.021 17 C 0.184 3.816 18 O -0.384 6.384 19 C -0.589 4.589 20 H 0.092 0.908 21 C -0.169 4.169 22 N -0.560 5.560 23 Si 0.792 3.208 24 H -0.190 1.190 25 H -0.210 1.210 26 H -0.205 1.205 27 C 0.013 3.987 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.161 0.839 31 H 0.135 0.865 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.243 0.757 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.871 -18.125 1.454 18.408 hybrid contribution -0.687 1.963 0.547 2.151 sum -3.557 -16.161 2.001 16.669 Atomic orbital electron populations 1.23665 0.74502 1.06240 1.02589 1.86469 1.25128 1.31409 1.83521 1.23905 0.92308 0.81961 0.72291 1.90796 1.67613 1.37309 1.45375 1.21922 0.87238 0.93792 1.06720 0.84357 1.22130 0.97775 1.00722 0.92500 1.22123 0.99063 0.95152 0.98505 1.22283 0.89144 1.02403 1.00276 1.31411 1.08133 1.05450 1.22694 0.83978 1.04160 0.72441 0.72916 0.77598 1.93508 1.66853 1.73347 1.63076 1.93530 1.41038 1.82083 1.81380 1.59580 1.20113 1.21188 1.87113 1.23533 1.01648 0.78443 0.98506 1.19891 0.89867 0.91153 0.80717 1.85929 1.90433 1.45427 1.16654 1.21843 1.29212 0.94245 1.13614 0.90775 1.25740 0.94269 1.02597 0.94341 1.69341 1.35961 1.33565 1.17128 0.85379 0.78186 0.78924 0.78329 1.19036 1.20972 1.20520 1.22813 0.81318 0.95179 0.99343 0.91702 0.92492 0.83946 0.86526 0.90340 0.90412 0.87945 0.89085 0.89618 0.90759 0.93412 0.75720 0.91587 0.89895 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.56 113.37 1.20 1.58 16 2 O -0.35 -7.77 10.54 -51.32 -0.54 -8.32 16 3 C 0.45 12.78 7.12 71.24 0.51 13.28 16 4 O -0.52 -19.01 14.96 23.58 0.35 -18.66 16 5 C -0.08 -1.85 2.83 -10.44 -0.03 -1.88 16 6 H 0.14 2.92 7.96 -2.39 -0.02 2.90 16 7 C -0.09 -1.55 6.34 31.32 0.20 -1.35 16 8 C -0.11 -1.95 6.80 31.32 0.21 -1.74 16 9 C -0.10 -2.63 6.15 31.67 0.19 -2.44 16 10 C -0.56 -17.16 2.64 31.91 0.08 -17.08 16 11 H 0.14 4.67 7.53 -2.39 -0.02 4.65 16 12 S 2.63 102.01 5.48 -56.49 -0.31 101.70 16 13 O -0.98 -38.83 17.75 -127.65 -2.27 -41.10 16 14 O -0.99 -45.79 17.52 -125.65 -2.20 -47.99 16 15 N -1.04 -42.99 3.96 -549.95 -2.18 -45.17 16 16 C 0.10 4.81 8.13 83.27 0.68 5.49 16 17 C 0.23 10.51 1.59 -11.12 -0.02 10.49 16 18 O -0.57 -26.94 13.06 -148.98 -1.95 -28.89 16 19 C -0.55 -27.08 8.68 25.60 0.22 -26.86 16 20 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 21 C 0.03 1.50 5.39 84.65 0.46 1.96 16 22 N -0.92 -46.45 11.01 21.45 0.24 -46.21 16 23 Si 0.97 39.56 29.54 68.60 2.03 41.58 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 27 C 0.14 5.56 8.10 83.18 0.67 6.23 16 28 H 0.06 1.10 8.13 -2.39 -0.02 1.09 16 29 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 30 H 0.14 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.25 7.83 -2.39 -0.02 1.23 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 2.70 7.64 -2.39 -0.02 2.69 16 36 H 0.09 2.09 7.84 -2.39 -0.02 2.07 16 37 H 0.07 3.39 8.10 -2.39 -0.02 3.37 16 38 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.39 19.30 6.32 -74.06 -0.47 18.83 16 40 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 41 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.09 3.50 8.10 -2.39 -0.02 3.48 16 Total: -1.00 -67.40 362.04 -1.87 -69.27 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: 0.57 Total: 36.09 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 4.38 Total: -12.31 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -1.94 Total: -91.38 kcal Atomic # 8 Polarization: -138.35 SS G_CDS: -6.60 Total: -144.95 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.58 kcal Atomic # 16 Polarization: 102.01 SS G_CDS: -0.31 Total: 101.70 kcal Total: -67.40 -1.87 -69.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358912064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.626 kcal (2) G-P(sol) polarization free energy of solvation -67.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds