Wall clock time and date at job start Tue Mar 31 2020 16:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99416 * 2 1 4 4 O 1.20821 * 120.00796 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99900 * 180.02562 * 3 2 1 6 6 H 1.09006 * 110.43428 * 298.91489 * 5 3 2 7 7 C 1.54266 * 110.48614 * 61.45502 * 5 3 2 8 8 C 1.53869 * 106.59800 * 142.42646 * 7 5 3 9 9 C 1.54266 * 106.60031 * 359.97438 * 8 7 5 10 10 C 1.54894 * 104.31305 * 336.32486 * 9 8 7 11 11 H 1.08993 * 110.76071 * 279.69749 * 10 9 8 12 12 S 1.81398 * 110.75501 * 156.31767 * 10 9 8 13 13 O 1.42101 * 110.54270 * 173.07918 * 12 10 9 14 14 O 1.42093 * 110.54780 * 309.83647 * 12 10 9 15 15 N 1.65603 * 104.44613 * 61.45956 * 12 10 9 16 16 C 1.47070 * 136.05742 * 269.62800 * 15 12 10 17 17 C 1.53754 * 87.88759 * 152.96448 * 16 15 12 18 18 O 1.42906 * 114.57153 * 272.66209 * 17 16 15 19 19 C 1.50699 * 114.08774 * 139.77956 * 17 16 15 20 20 H 1.08000 * 120.00424 * 266.56008 * 19 17 16 21 21 C 1.37880 * 119.99963 * 86.55982 * 19 17 16 22 22 N 1.31518 * 119.99876 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 120.00060 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47022 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47100 * 119.99776 * 23 21 19 26 26 H 1.48496 * 109.47137 * 239.99808 * 23 21 19 27 27 C 1.47071 * 136.06008 * 89.99863 * 15 12 10 28 28 H 1.09000 * 109.47106 * 299.99311 * 1 2 3 29 29 H 1.08999 * 109.47634 * 60.00302 * 1 2 3 30 30 H 1.09007 * 109.46445 * 179.97438 * 1 2 3 31 31 H 1.08999 * 110.03060 * 23.13380 * 7 5 3 32 32 H 1.09006 * 110.06829 * 261.72758 * 7 5 3 33 33 H 1.09001 * 110.02983 * 240.71432 * 8 7 5 34 34 H 1.08996 * 110.07773 * 119.30576 * 8 7 5 35 35 H 1.09002 * 110.48629 * 95.07240 * 9 8 7 36 36 H 1.08998 * 110.48744 * 217.58143 * 9 8 7 37 37 H 1.09003 * 113.46182 * 267.69370 * 16 15 12 38 38 H 1.08997 * 113.46819 * 38.13467 * 16 15 12 39 39 H 0.96704 * 113.99959 * 273.67056 * 18 17 16 40 40 H 0.97003 * 119.99383 * 179.97438 * 22 21 19 41 41 H 1.09007 * 113.46270 * 321.86342 * 27 15 12 42 42 H 1.08999 * 113.46747 * 92.30234 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0612 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9726 0.8016 0.8933 7 6 4.1411 0.6140 -1.2704 8 6 5.3465 1.4670 -1.7027 9 6 5.4617 2.6171 -0.6810 10 6 4.0347 2.7523 -0.0942 11 1 3.3923 3.3198 -0.7674 12 16 4.0852 3.5200 1.5486 13 8 2.7698 3.7875 2.0147 14 8 5.0367 2.8650 2.3761 15 7 4.7374 5.0191 1.2842 16 6 6.0890 5.5985 1.2706 17 6 5.5633 6.6580 0.2881 18 8 5.6242 6.2751 -1.0874 19 6 6.0878 8.0475 0.5434 20 1 5.5241 8.7329 1.1589 21 6 7.2873 8.4439 -0.0090 22 7 7.9740 7.6091 -0.7582 23 14 7.9378 10.1661 0.3080 24 1 6.9849 10.9031 1.1763 25 1 9.2580 10.0802 0.9824 26 1 8.0873 10.8842 -0.9832 27 6 4.2193 6.3583 0.9660 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 3.3888 0.6036 -2.0591 32 1 4.4639 -0.4034 -1.0491 33 1 5.1793 1.8707 -2.7014 34 1 6.2547 0.8645 -1.6912 35 1 6.1740 2.3607 0.1032 36 1 5.7590 3.5405 -1.1779 37 1 6.3938 6.0116 2.2321 38 1 6.8402 4.9378 0.8378 39 1 6.4722 6.4653 -1.5114 40 1 8.8177 7.8882 -1.1471 41 1 3.3774 6.3447 0.2737 42 1 4.0312 6.9716 1.8472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358912065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:20 Heat of formation + Delta-G solvation = -167.843071 kcal Electronic energy + Delta-G solvation = -28475.332824 eV Core-core repulsion = 24356.230452 eV Total energy + Delta-G solvation = -4119.102372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.80729 -38.60532 -37.97479 -36.72340 -36.35696 -35.53514 -33.96546 -32.15217 -30.20480 -29.25001 -27.84074 -27.51078 -25.03771 -24.67964 -22.94162 -20.89018 -20.48069 -19.54519 -18.37945 -17.91408 -17.48389 -17.09341 -16.90373 -16.47087 -16.18219 -15.54393 -15.08214 -14.70704 -14.26955 -14.16730 -13.83498 -13.67153 -13.44338 -13.16068 -13.09235 -12.89539 -12.43597 -12.25068 -12.08449 -11.74299 -11.66089 -11.61235 -11.55159 -11.51988 -11.35267 -11.19294 -11.06142 -10.96248 -10.76598 -10.71406 -10.46473 -10.40480 -10.31594 -10.20668 -9.27737 -8.77137 -8.49514 -8.02942 -6.37156 -4.45616 0.61625 2.02699 2.43587 3.05066 3.15861 3.25535 3.29791 3.87231 4.20071 4.21028 4.24902 4.55018 4.57120 4.78236 4.88059 4.92077 5.00587 5.10014 5.10804 5.18404 5.30845 5.33919 5.46873 5.50846 5.73295 5.85919 5.93797 6.07117 6.13867 6.15546 6.17173 6.29295 6.37406 6.44564 6.70291 6.75529 7.05491 7.53531 7.55733 7.69390 7.87469 8.57767 9.24741 9.49956 10.69371 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.022532 B = 0.003649 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.373381 B = 7671.152759 C = 8109.305405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.357 6.357 3 C 0.454 3.546 4 O -0.479 6.479 5 C -0.069 4.069 6 H 0.120 0.880 7 C -0.101 4.101 8 C -0.116 4.116 9 C -0.101 4.101 10 C -0.583 4.583 11 H 0.152 0.848 12 S 2.633 3.367 13 O -0.952 6.952 14 O -0.963 6.963 15 N -1.039 6.039 16 C 0.107 3.893 17 C 0.239 3.761 18 O -0.572 6.572 19 C -0.531 4.531 20 H 0.072 0.928 21 C 0.071 3.929 22 N -0.899 5.899 23 Si 0.907 3.093 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.135 3.865 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.393 0.607 40 H 0.272 0.728 41 H 0.063 0.937 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 -14.073 -2.348 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.274 6.274 3 C 0.295 3.705 4 O -0.364 6.364 5 C -0.090 4.090 6 H 0.138 0.862 7 C -0.139 4.139 8 C -0.154 4.154 9 C -0.139 4.139 10 C -0.690 4.690 11 H 0.170 0.830 12 S 2.729 3.271 13 O -0.943 6.943 14 O -0.954 6.954 15 N -0.879 5.879 16 C -0.019 4.019 17 C 0.196 3.804 18 O -0.386 6.386 19 C -0.570 4.570 20 H 0.091 0.909 21 C -0.131 4.131 22 N -0.540 5.540 23 Si 0.734 3.266 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.208 1.208 27 C 0.010 3.990 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.250 0.750 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.313 -14.567 -1.466 16.365 hybrid contribution 0.725 0.973 -0.551 1.333 sum -6.588 -13.594 -2.016 15.240 Atomic orbital electron populations 1.23318 0.76143 1.03687 1.02942 1.86479 1.23567 1.33012 1.84319 1.23560 0.91667 0.81878 0.73428 1.90786 1.66597 1.35855 1.43122 1.21732 0.87820 0.95480 1.03959 0.86232 1.22048 0.98056 0.99535 0.94249 1.22091 0.97586 0.96194 0.99538 1.22183 0.90895 1.01408 0.99416 1.31764 1.06304 1.03977 1.26992 0.83042 1.04136 0.73591 0.73220 0.76198 1.93575 1.39218 1.83356 1.78109 1.93542 1.62952 1.75681 1.63187 1.59632 1.20701 1.20466 1.87106 1.23669 0.81821 0.95079 1.01308 1.19762 0.89598 0.90834 0.80236 1.85985 1.43152 1.85815 1.23611 1.21568 1.05593 0.98206 1.31631 0.90949 1.25062 0.95969 0.98125 0.93923 1.69260 1.15668 1.35563 1.33549 0.86290 0.78766 0.83273 0.78230 1.19468 1.20736 1.20751 1.22810 0.98928 0.79107 0.98168 0.91557 0.91760 0.87994 0.90896 0.89847 0.90808 0.90661 0.90073 0.87685 0.90381 0.91971 0.75016 0.91749 0.91818 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.30 10.54 -39.25 -0.41 -4.72 16 3 C 0.45 6.59 7.12 36.01 0.26 6.85 16 4 O -0.48 -8.47 14.86 -21.12 -0.31 -8.79 16 5 C -0.07 -0.91 2.83 -89.91 -0.25 -1.17 16 6 H 0.12 1.41 8.05 -51.93 -0.42 0.99 16 7 C -0.10 -1.03 6.34 -25.62 -0.16 -1.19 16 8 C -0.12 -1.24 6.80 -25.62 -0.17 -1.42 16 9 C -0.10 -1.41 6.24 -25.07 -0.16 -1.56 16 10 C -0.58 -9.04 2.65 -24.53 -0.07 -9.10 16 11 H 0.15 2.42 7.54 -51.93 -0.39 2.03 16 12 S 2.63 50.55 5.49 -107.50 -0.59 49.96 16 13 O -0.95 -20.80 17.41 -60.48 -1.05 -21.85 16 14 O -0.96 -19.75 17.64 -57.54 -1.01 -20.76 16 15 N -1.04 -21.24 4.07 -125.01 -0.51 -21.75 16 16 C 0.11 2.30 8.13 -8.37 -0.07 2.23 16 17 C 0.24 5.51 1.59 -91.13 -0.14 5.37 16 18 O -0.57 -13.46 13.55 -35.23 -0.48 -13.94 16 19 C -0.53 -13.07 8.68 -34.44 -0.30 -13.37 16 20 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 21 C 0.07 1.74 5.39 -17.82 -0.10 1.64 16 22 N -0.90 -22.15 11.01 55.43 0.61 -21.54 16 23 Si 0.91 19.28 29.54 -169.99 -5.02 14.26 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 C 0.13 2.84 8.10 -8.51 -0.07 2.77 16 28 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.71 7.83 -51.93 -0.41 0.30 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.13 7.67 -51.93 -0.40 0.73 16 36 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.39 9.52 6.33 45.56 0.29 9.80 16 40 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -30.73 362.87 -9.00 -39.73 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -5.52 Total: 11.51 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -0.17 Total: -7.58 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.10 Total: -43.28 kcal Atomic # 8 Polarization: -66.79 SS G_CDS: -3.27 Total: -70.06 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 16 Polarization: 50.55 SS G_CDS: -0.59 Total: 49.96 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.73 -9.00 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358912065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.115 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds