Wall clock time and date at job start Tue Mar 31 2020 16:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99416 * 2 1 4 4 O 1.20821 * 120.00796 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99900 * 180.02562 * 3 2 1 6 6 H 1.09006 * 110.43428 * 298.91489 * 5 3 2 7 7 C 1.54266 * 110.48614 * 61.45502 * 5 3 2 8 8 C 1.53869 * 106.59800 * 142.42646 * 7 5 3 9 9 C 1.54266 * 106.60031 * 359.97438 * 8 7 5 10 10 C 1.54894 * 104.31305 * 336.32486 * 9 8 7 11 11 H 1.08993 * 110.76071 * 279.69749 * 10 9 8 12 12 S 1.81398 * 110.75501 * 156.31767 * 10 9 8 13 13 O 1.42101 * 110.54270 * 173.07918 * 12 10 9 14 14 O 1.42093 * 110.54780 * 309.83647 * 12 10 9 15 15 N 1.65603 * 104.44613 * 61.45956 * 12 10 9 16 16 C 1.47070 * 136.05742 * 269.62800 * 15 12 10 17 17 C 1.53754 * 87.88759 * 152.96448 * 16 15 12 18 18 O 1.42906 * 114.57153 * 272.66209 * 17 16 15 19 19 C 1.50699 * 114.08774 * 139.77956 * 17 16 15 20 20 H 1.08000 * 120.00424 * 266.56008 * 19 17 16 21 21 C 1.37880 * 119.99963 * 86.55982 * 19 17 16 22 22 N 1.31518 * 119.99876 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 120.00060 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47022 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47100 * 119.99776 * 23 21 19 26 26 H 1.48496 * 109.47137 * 239.99808 * 23 21 19 27 27 C 1.47071 * 136.06008 * 89.99863 * 15 12 10 28 28 H 1.09000 * 109.47106 * 299.99311 * 1 2 3 29 29 H 1.08999 * 109.47634 * 60.00302 * 1 2 3 30 30 H 1.09007 * 109.46445 * 179.97438 * 1 2 3 31 31 H 1.08999 * 110.03060 * 23.13380 * 7 5 3 32 32 H 1.09006 * 110.06829 * 261.72758 * 7 5 3 33 33 H 1.09001 * 110.02983 * 240.71432 * 8 7 5 34 34 H 1.08996 * 110.07773 * 119.30576 * 8 7 5 35 35 H 1.09002 * 110.48629 * 95.07240 * 9 8 7 36 36 H 1.08998 * 110.48744 * 217.58143 * 9 8 7 37 37 H 1.09003 * 113.46182 * 267.69370 * 16 15 12 38 38 H 1.08997 * 113.46819 * 38.13467 * 16 15 12 39 39 H 0.96704 * 113.99959 * 273.67056 * 18 17 16 40 40 H 0.97003 * 119.99383 * 179.97438 * 22 21 19 41 41 H 1.09007 * 113.46270 * 321.86342 * 27 15 12 42 42 H 1.08999 * 113.46747 * 92.30234 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0612 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9726 0.8016 0.8933 7 6 4.1411 0.6140 -1.2704 8 6 5.3465 1.4670 -1.7027 9 6 5.4617 2.6171 -0.6810 10 6 4.0347 2.7523 -0.0942 11 1 3.3923 3.3198 -0.7674 12 16 4.0852 3.5200 1.5486 13 8 2.7698 3.7875 2.0147 14 8 5.0367 2.8650 2.3761 15 7 4.7374 5.0191 1.2842 16 6 6.0890 5.5985 1.2706 17 6 5.5633 6.6580 0.2881 18 8 5.6242 6.2751 -1.0874 19 6 6.0878 8.0475 0.5434 20 1 5.5241 8.7329 1.1589 21 6 7.2873 8.4439 -0.0090 22 7 7.9740 7.6091 -0.7582 23 14 7.9378 10.1661 0.3080 24 1 6.9849 10.9031 1.1763 25 1 9.2580 10.0802 0.9824 26 1 8.0873 10.8842 -0.9832 27 6 4.2193 6.3583 0.9660 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 3.3888 0.6036 -2.0591 32 1 4.4639 -0.4034 -1.0491 33 1 5.1793 1.8707 -2.7014 34 1 6.2547 0.8645 -1.6912 35 1 6.1740 2.3607 0.1032 36 1 5.7590 3.5405 -1.1779 37 1 6.3938 6.0116 2.2321 38 1 6.8402 4.9378 0.8378 39 1 6.4722 6.4653 -1.5114 40 1 8.8177 7.8882 -1.1471 41 1 3.3774 6.3447 0.2737 42 1 4.0312 6.9716 1.8472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358912065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:14 Heat of formation + Delta-G solvation = -190.610287 kcal Electronic energy + Delta-G solvation = -28476.320084 eV Core-core repulsion = 24356.230452 eV Total energy + Delta-G solvation = -4120.089632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.88441 -40.33997 -39.01241 -38.25228 -37.50677 -37.15520 -35.77973 -34.02843 -31.22524 -30.31300 -29.55873 -28.35200 -26.75514 -26.46824 -24.00264 -22.00110 -21.61344 -21.10920 -19.89368 -19.44712 -18.90400 -18.26607 -18.19363 -17.97748 -17.33504 -17.15671 -16.81880 -15.99729 -15.70568 -15.47251 -15.15130 -14.92536 -14.79870 -14.71954 -14.40348 -14.07422 -13.85245 -13.49508 -13.39704 -13.35156 -13.28914 -13.24959 -13.13403 -12.79451 -12.55481 -12.49234 -12.33047 -12.22500 -12.19382 -12.07055 -11.89925 -11.77950 -11.65790 -11.32640 -11.06511 -10.60991 -10.22338 -9.77792 -8.22148 -6.37001 -0.88945 0.92711 1.41581 1.47146 1.51876 1.55768 1.62289 2.43391 2.61777 2.82031 2.92862 3.02858 3.32239 3.57005 3.69891 3.77487 3.99222 4.15797 4.23824 4.25175 4.27482 4.28273 4.30968 4.43347 4.58274 4.65455 4.66145 4.71988 4.83596 4.94955 4.97949 5.02568 5.09565 5.15984 5.18819 5.27208 5.34787 5.73621 5.86589 6.02626 6.49359 6.68447 7.35581 7.59833 8.83505 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.022532 B = 0.003649 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.373381 B = 7671.152759 C = 8109.305405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.350 6.350 3 C 0.454 3.546 4 O -0.520 6.520 5 C -0.076 4.076 6 H 0.136 0.864 7 C -0.093 4.093 8 C -0.110 4.110 9 C -0.104 4.104 10 C -0.563 4.563 11 H 0.147 0.853 12 S 2.629 3.371 13 O -0.985 6.985 14 O -0.981 6.981 15 N -1.041 6.041 16 C 0.110 3.890 17 C 0.227 3.773 18 O -0.575 6.575 19 C -0.554 4.554 20 H 0.070 0.930 21 C 0.034 3.966 22 N -0.914 5.914 23 Si 0.965 3.035 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.280 1.280 27 C 0.133 3.867 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.142 0.858 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.389 0.611 40 H 0.276 0.724 41 H 0.067 0.933 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.960 -15.797 -3.248 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.266 6.266 3 C 0.297 3.703 4 O -0.408 6.408 5 C -0.097 4.097 6 H 0.153 0.847 7 C -0.131 4.131 8 C -0.148 4.148 9 C -0.142 4.142 10 C -0.675 4.675 11 H 0.165 0.835 12 S 2.729 3.271 13 O -0.975 6.975 14 O -0.971 6.971 15 N -0.880 5.880 16 C -0.015 4.015 17 C 0.183 3.817 18 O -0.387 6.387 19 C -0.592 4.592 20 H 0.088 0.912 21 C -0.167 4.167 22 N -0.555 5.555 23 Si 0.791 3.209 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.206 1.206 27 C 0.008 3.992 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.160 0.840 31 H 0.099 0.901 32 H 0.134 0.866 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.244 0.756 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.036 -16.288 -2.318 17.894 hybrid contribution 0.570 1.417 -0.297 1.556 sum -6.466 -14.872 -2.615 16.426 Atomic orbital electron populations 1.23664 0.74472 1.06204 1.02624 1.86472 1.25158 1.31442 1.83566 1.23819 0.92165 0.81982 0.72354 1.90777 1.67527 1.37245 1.45239 1.21959 0.87449 0.93729 1.06546 0.84668 1.22124 0.97729 1.00660 0.92590 1.22119 0.99074 0.95119 0.98510 1.22256 0.89438 1.02292 1.00243 1.31458 1.07866 1.05441 1.22779 0.83510 1.04146 0.72543 0.72807 0.77573 1.93531 1.40348 1.83770 1.79877 1.93509 1.63036 1.75556 1.65048 1.59590 1.19971 1.20906 1.87578 1.23496 0.82348 0.94917 1.00771 1.19884 0.90862 0.90782 0.80138 1.85976 1.42827 1.85842 1.24086 1.21806 1.06159 0.99098 1.32172 0.91207 1.25690 0.96103 1.01105 0.93766 1.69318 1.15853 1.36656 1.33679 0.85393 0.78023 0.79565 0.77918 1.19478 1.20518 1.20612 1.22810 0.98271 0.79729 0.98394 0.92454 0.91628 0.84046 0.90112 0.86604 0.90219 0.88157 0.90039 0.89443 0.90653 0.91830 0.75554 0.91441 0.91488 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.56 113.37 1.20 1.58 16 2 O -0.35 -7.69 10.54 -51.39 -0.54 -8.23 16 3 C 0.45 12.61 7.12 71.24 0.51 13.12 16 4 O -0.52 -18.39 14.86 24.25 0.36 -18.03 16 5 C -0.08 -1.86 2.83 -10.33 -0.03 -1.89 16 6 H 0.14 2.89 8.05 -2.38 -0.02 2.87 16 7 C -0.09 -1.56 6.34 31.32 0.20 -1.36 16 8 C -0.11 -2.01 6.80 31.32 0.21 -1.80 16 9 C -0.10 -2.77 6.24 31.67 0.20 -2.57 16 10 C -0.56 -17.11 2.65 32.02 0.09 -17.03 16 11 H 0.15 4.69 7.54 -2.39 -0.02 4.68 16 12 S 2.63 102.02 5.49 -56.49 -0.31 101.71 16 13 O -0.98 -44.02 17.41 -124.84 -2.17 -46.19 16 14 O -0.98 -40.35 17.64 -127.65 -2.25 -42.60 16 15 N -1.04 -43.33 4.07 -549.89 -2.24 -45.56 16 16 C 0.11 4.84 8.13 83.26 0.68 5.52 16 17 C 0.23 10.59 1.59 -11.12 -0.02 10.58 16 18 O -0.57 -27.41 13.55 -148.98 -2.02 -29.43 16 19 C -0.55 -27.47 8.68 25.60 0.22 -27.24 16 20 H 0.07 3.41 7.81 -2.91 -0.02 3.38 16 21 C 0.03 1.64 5.39 84.65 0.46 2.10 16 22 N -0.91 -44.94 11.01 21.45 0.24 -44.70 16 23 Si 0.97 39.34 29.54 68.60 2.03 41.37 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 25 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 27 C 0.13 5.72 8.10 83.18 0.67 6.39 16 28 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 29 H 0.06 1.07 8.13 -2.39 -0.02 1.06 16 30 H 0.14 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.08 1.27 7.83 -2.39 -0.02 1.25 16 32 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 2.17 7.67 -2.39 -0.02 2.15 16 36 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.08 3.29 8.10 -2.39 -0.02 3.27 16 38 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.39 19.08 6.33 -74.05 -0.47 18.61 16 40 H 0.28 12.81 8.31 -92.71 -0.77 12.04 16 41 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 42 H 0.09 3.72 8.10 -2.39 -0.02 3.70 16 Total: -1.00 -66.38 362.87 -1.96 -68.33 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: 0.57 Total: 35.94 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 4.38 Total: -12.60 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -2.00 Total: -90.26 kcal Atomic # 8 Polarization: -137.86 SS G_CDS: -6.63 Total: -144.49 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Atomic # 16 Polarization: 102.02 SS G_CDS: -0.31 Total: 101.71 kcal Total: -66.38 -1.96 -68.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358912065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.279 kcal (2) G-P(sol) polarization free energy of solvation -66.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds