Wall clock time and date at job start Tue Mar 31 2020 16:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34236 * 116.99965 * 2 1 4 4 O 1.20826 * 119.99726 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00135 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.67498 * 9.17905 * 5 3 2 7 7 C 1.53286 * 109.68134 * 248.65701 * 5 3 2 8 8 O 1.42968 * 109.22011 * 187.97377 * 7 5 3 9 9 C 1.42955 * 114.16307 * 62.58439 * 8 7 5 10 10 C 1.53297 * 109.22388 * 297.41451 * 9 8 7 11 11 N 1.47150 * 108.38226 * 52.30729 * 10 9 8 12 12 S 1.65599 * 120.98288 * 129.48883 * 11 10 9 13 13 O 1.42100 * 104.27818 * 25.63696 * 12 11 10 14 14 O 1.42098 * 104.27836 * 153.49492 * 12 11 10 15 15 C 1.81398 * 104.44868 * 269.56777 * 12 11 10 16 16 C 1.52991 * 109.47172 * 177.35496 * 15 12 11 17 17 C 1.50700 * 115.55238 * 40.33926 * 16 15 12 18 18 H 1.08004 * 119.99868 * 270.41758 * 17 16 15 19 19 C 1.37873 * 120.00253 * 90.41670 * 17 16 15 20 20 N 1.31517 * 119.99964 * 179.89275 * 19 17 16 21 21 Si 1.86800 * 120.00019 * 359.90188 * 19 17 16 22 22 H 1.48494 * 109.47465 * 90.44619 * 21 19 17 23 23 H 1.48504 * 109.47188 * 210.45172 * 21 19 17 24 24 H 1.48507 * 109.47017 * 330.44679 * 21 19 17 25 25 C 1.53009 * 117.49753 * 254.63098 * 16 15 12 26 26 C 1.52999 * 59.99893 * 252.50795 * 25 16 15 27 27 H 1.09005 * 109.46916 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47018 * 60.00657 * 1 2 3 29 29 H 1.09000 * 109.47477 * 299.99833 * 1 2 3 30 30 H 1.08999 * 109.51716 * 307.90088 * 7 5 3 31 31 H 1.09008 * 109.51639 * 68.00232 * 7 5 3 32 32 H 1.08994 * 109.51846 * 57.34509 * 9 8 7 33 33 H 1.09007 * 109.51036 * 177.49314 * 9 8 7 34 34 H 1.08993 * 109.68003 * 172.03203 * 10 9 8 35 35 H 1.08999 * 109.67750 * 292.58399 * 10 9 8 36 36 H 1.09008 * 109.47248 * 297.35585 * 15 12 11 37 37 H 1.09003 * 109.47183 * 57.35057 * 15 12 11 38 38 H 0.97002 * 120.00003 * 179.97438 * 20 19 17 39 39 H 1.08999 * 117.49984 * 359.97438 * 25 16 15 40 40 H 1.09003 * 117.49686 * 145.02384 * 25 16 15 41 41 H 1.09003 * 117.50277 * 252.51072 * 26 25 16 42 42 H 1.09006 * 117.49823 * 107.48792 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9859 0.2823 -0.1628 7 6 4.0538 1.8268 1.3450 8 8 5.4603 2.0727 1.2707 9 6 5.8318 3.0585 0.3044 10 6 5.4353 2.5696 -1.0934 11 7 4.0152 2.1851 -1.0650 12 16 2.9538 2.7591 -2.1992 13 8 3.7686 3.0495 -3.3265 14 8 1.9397 1.7658 -2.2646 15 6 2.3009 4.2887 -1.4748 16 6 1.3464 4.9559 -2.4670 17 6 0.4349 4.0220 -3.2206 18 1 0.7539 3.5987 -4.1617 19 6 -0.8061 3.7077 -2.7088 20 7 -1.6024 2.8943 -3.3675 21 14 -1.3567 4.4375 -1.0797 22 1 -2.0678 5.7176 -1.3259 23 1 -2.2700 3.4874 -0.3952 24 1 -0.1697 4.6874 -0.2229 25 6 1.8485 6.2001 -3.2026 26 6 0.7968 6.3358 -2.0997 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 3.5327 2.7581 1.5669 31 1 3.8516 1.1001 2.1319 32 1 5.3172 3.9942 0.5224 33 1 6.9095 3.2175 0.3424 34 1 5.5845 3.3699 -1.8181 35 1 6.0437 1.7077 -1.3671 36 1 1.7640 4.0550 -0.5553 37 1 3.1253 4.9660 -1.2520 38 1 -2.4753 2.6729 -3.0072 39 1 2.8586 6.5434 -2.9793 40 1 1.5196 6.3432 -4.2319 41 1 -0.2240 6.5681 -2.4034 42 1 1.1152 6.7681 -1.1510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451268874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:39 Heat of formation + Delta-G solvation = -141.853154 kcal Electronic energy + Delta-G solvation = -30199.602454 eV Core-core repulsion = 26081.627090 eV Total energy + Delta-G solvation = -4117.975364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 4.88 seconds Orbital eigenvalues (eV) -40.65091 -39.05723 -37.08537 -36.66247 -35.95966 -35.14292 -34.73807 -32.10899 -31.99117 -28.45028 -27.91764 -27.00883 -25.47074 -24.93377 -22.02438 -21.71540 -21.09956 -19.34050 -18.60004 -17.77113 -17.37466 -17.04289 -16.60713 -16.04480 -15.88718 -15.56859 -15.44849 -15.21108 -14.81816 -14.55396 -14.29461 -13.94393 -13.77949 -13.14574 -12.91626 -12.76341 -12.60749 -12.54857 -12.15998 -11.78661 -11.74358 -11.58125 -11.31416 -11.20646 -11.13829 -10.83910 -10.69015 -10.65763 -10.53892 -10.37223 -10.29002 -10.09163 -9.92495 -9.62575 -9.11394 -8.93754 -8.57172 -8.41299 -6.12090 -4.23517 0.90401 2.23435 2.69521 3.21351 3.31708 3.39817 3.50338 3.63330 4.38282 4.45119 4.53095 4.62373 4.69051 4.79762 4.86746 4.93492 4.98794 5.11597 5.14520 5.29672 5.31046 5.43175 5.48725 5.52465 5.65382 5.71604 5.76603 5.88876 6.05666 6.07690 6.12586 6.30204 6.42305 6.44795 6.61723 6.75918 6.79885 6.95667 7.07513 7.63232 7.95314 8.37755 8.87337 9.50899 10.98665 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.007384 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.292093 B = 3791.177162 C = 4741.367041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.344 6.344 3 C 0.468 3.532 4 O -0.490 6.490 5 C 0.132 3.868 6 H 0.114 0.886 7 C 0.061 3.939 8 O -0.368 6.368 9 C 0.042 3.958 10 C 0.089 3.911 11 N -1.009 6.009 12 S 2.620 3.380 13 O -0.966 6.966 14 O -0.919 6.919 15 C -0.574 4.574 16 C 0.013 3.987 17 C -0.529 4.529 18 H 0.084 0.916 19 C 0.107 3.893 20 N -0.876 5.876 21 Si 0.882 3.118 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.250 1.250 25 C -0.179 4.179 26 C -0.188 4.188 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.149 0.851 37 H 0.096 0.904 38 H 0.265 0.735 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.039 -2.213 11.534 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.259 6.259 3 C 0.310 3.690 4 O -0.378 6.378 5 C 0.024 3.976 6 H 0.132 0.868 7 C -0.018 4.018 8 O -0.286 6.286 9 C -0.037 4.037 10 C -0.036 4.036 11 N -0.847 5.847 12 S 2.718 3.282 13 O -0.957 6.957 14 O -0.909 6.909 15 C -0.706 4.706 16 C 0.010 3.990 17 C -0.566 4.566 18 H 0.101 0.899 19 C -0.099 4.099 20 N -0.511 5.511 21 Si 0.710 3.290 22 H -0.211 1.211 23 H -0.221 1.221 24 H -0.174 1.174 25 C -0.216 4.216 26 C -0.226 4.226 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.167 0.833 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.597 -2.600 10.796 16.056 hybrid contribution -0.878 1.032 1.098 1.745 sum 10.718 -1.568 11.894 16.088 Atomic orbital electron populations 1.23350 0.75184 1.03333 1.03725 1.86310 1.24260 1.31894 1.83423 1.22820 0.90526 0.82870 0.72779 1.90699 1.66768 1.35545 1.44818 1.20980 0.88758 0.97074 0.90811 0.86840 1.22860 0.82847 1.01831 0.94240 1.87974 1.21940 1.60216 1.58472 1.23104 1.01540 0.91229 0.87778 1.22106 0.80901 1.02185 0.98410 1.58602 1.20434 1.60359 1.45292 1.04992 0.72617 0.77480 0.73089 1.93480 1.68422 1.86655 1.47095 1.93535 1.57328 1.56042 1.84026 1.30419 1.08817 1.18689 1.12661 1.18768 0.96926 0.87681 0.95580 1.20311 1.00417 1.27891 1.07950 0.89858 1.24831 0.95747 0.93022 0.96313 1.69903 1.09145 1.33426 1.38581 0.86821 0.79128 0.78048 0.85006 1.21055 1.22126 1.17416 1.23002 0.96815 1.04381 0.97388 1.22935 0.98774 1.02612 0.98324 0.88450 0.89735 0.92409 0.91179 0.86861 0.92150 0.87191 0.87761 0.89934 0.83342 0.88590 0.92476 0.90671 0.88853 0.89082 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.56 101.05 1.07 1.67 16 2 O -0.34 -5.86 10.57 -41.30 -0.44 -6.29 16 3 C 0.47 8.30 4.27 36.01 0.15 8.46 16 4 O -0.49 -10.09 11.53 -26.53 -0.31 -10.40 16 5 C 0.13 1.89 3.50 -68.58 -0.24 1.65 16 6 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 7 C 0.06 0.69 6.27 37.31 0.23 0.92 16 8 O -0.37 -4.08 10.74 -35.23 -0.38 -4.46 16 9 C 0.04 0.40 6.98 37.31 0.26 0.66 16 10 C 0.09 1.07 6.50 -3.53 -0.02 1.05 16 11 N -1.01 -16.10 3.26 -107.26 -0.35 -16.45 16 12 S 2.62 56.55 3.99 -107.50 -0.43 56.12 16 13 O -0.97 -22.43 16.80 -57.54 -0.97 -23.39 16 14 O -0.92 -23.07 12.91 -67.75 -0.87 -23.95 16 15 C -0.57 -12.07 5.77 37.15 0.21 -11.85 16 16 C 0.01 0.32 1.11 -155.66 -0.17 0.14 16 17 C -0.53 -15.18 7.36 -34.44 -0.25 -15.43 16 18 H 0.08 2.65 8.06 -52.48 -0.42 2.23 16 19 C 0.11 3.14 5.47 -17.82 -0.10 3.04 16 20 N -0.88 -26.88 13.96 55.43 0.77 -26.11 16 21 Si 0.88 22.51 24.84 -169.99 -4.22 18.28 16 22 H -0.28 -7.03 7.07 56.52 0.40 -6.63 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.25 -6.09 5.60 56.52 0.32 -5.77 16 25 C -0.18 -3.76 9.88 -26.73 -0.26 -4.03 16 26 C -0.19 -4.08 7.40 -26.73 -0.20 -4.28 16 27 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.72 8.13 -51.93 -0.42 1.30 16 29 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 31 H 0.11 0.98 8.14 -51.92 -0.42 0.55 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 0.74 8.14 -51.92 -0.42 0.31 16 34 H 0.10 1.22 7.21 -51.93 -0.37 0.85 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.15 3.20 4.17 -51.92 -0.22 2.98 16 37 H 0.10 1.63 7.95 -51.92 -0.41 1.22 16 38 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 40 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 41 H 0.09 2.06 6.80 -51.93 -0.35 1.71 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 343.56 15.07 5.18 5.18 Total: -1.00 -36.47 343.56 -7.40 -43.87 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.07 Total: 5.59 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 0.68 Total: -17.99 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.42 Total: -42.56 kcal Atomic # 8 Polarization: -65.53 SS G_CDS: -2.96 Total: -68.49 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.22 Total: 18.28 kcal Atomic # 16 Polarization: 56.55 SS G_CDS: -0.43 Total: 56.12 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.47 -7.40 -43.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451268874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.983 kcal (2) G-P(sol) polarization free energy of solvation -36.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.88 seconds