Wall clock time and date at job start Tue Mar 31 2020 16:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34236 * 116.99965 * 2 1 4 4 O 1.20826 * 119.99726 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00135 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.67498 * 9.17905 * 5 3 2 7 7 C 1.53286 * 109.68134 * 248.65701 * 5 3 2 8 8 O 1.42968 * 109.22011 * 187.97377 * 7 5 3 9 9 C 1.42955 * 114.16307 * 62.58439 * 8 7 5 10 10 C 1.53297 * 109.22388 * 297.41451 * 9 8 7 11 11 N 1.47150 * 108.38226 * 52.30729 * 10 9 8 12 12 S 1.65599 * 120.98288 * 129.48883 * 11 10 9 13 13 O 1.42100 * 104.27818 * 25.63696 * 12 11 10 14 14 O 1.42098 * 104.27836 * 153.49492 * 12 11 10 15 15 C 1.81398 * 104.44868 * 269.56777 * 12 11 10 16 16 C 1.52991 * 109.47172 * 177.35496 * 15 12 11 17 17 C 1.50700 * 115.55238 * 40.33926 * 16 15 12 18 18 H 1.08004 * 119.99868 * 270.41758 * 17 16 15 19 19 C 1.37873 * 120.00253 * 90.41670 * 17 16 15 20 20 N 1.31517 * 119.99964 * 179.89275 * 19 17 16 21 21 Si 1.86800 * 120.00019 * 359.90188 * 19 17 16 22 22 H 1.48494 * 109.47465 * 90.44619 * 21 19 17 23 23 H 1.48504 * 109.47188 * 210.45172 * 21 19 17 24 24 H 1.48507 * 109.47017 * 330.44679 * 21 19 17 25 25 C 1.53009 * 117.49753 * 254.63098 * 16 15 12 26 26 C 1.52999 * 59.99893 * 252.50795 * 25 16 15 27 27 H 1.09005 * 109.46916 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47018 * 60.00657 * 1 2 3 29 29 H 1.09000 * 109.47477 * 299.99833 * 1 2 3 30 30 H 1.08999 * 109.51716 * 307.90088 * 7 5 3 31 31 H 1.09008 * 109.51639 * 68.00232 * 7 5 3 32 32 H 1.08994 * 109.51846 * 57.34509 * 9 8 7 33 33 H 1.09007 * 109.51036 * 177.49314 * 9 8 7 34 34 H 1.08993 * 109.68003 * 172.03203 * 10 9 8 35 35 H 1.08999 * 109.67750 * 292.58399 * 10 9 8 36 36 H 1.09008 * 109.47248 * 297.35585 * 15 12 11 37 37 H 1.09003 * 109.47183 * 57.35057 * 15 12 11 38 38 H 0.97002 * 120.00003 * 179.97438 * 20 19 17 39 39 H 1.08999 * 117.49984 * 359.97438 * 25 16 15 40 40 H 1.09003 * 117.49686 * 145.02384 * 25 16 15 41 41 H 1.09003 * 117.50277 * 252.51072 * 26 25 16 42 42 H 1.09006 * 117.49823 * 107.48792 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9859 0.2823 -0.1628 7 6 4.0538 1.8268 1.3450 8 8 5.4603 2.0727 1.2707 9 6 5.8318 3.0585 0.3044 10 6 5.4353 2.5696 -1.0934 11 7 4.0152 2.1851 -1.0650 12 16 2.9538 2.7591 -2.1992 13 8 3.7686 3.0495 -3.3265 14 8 1.9397 1.7658 -2.2646 15 6 2.3009 4.2887 -1.4748 16 6 1.3464 4.9559 -2.4670 17 6 0.4349 4.0220 -3.2206 18 1 0.7539 3.5987 -4.1617 19 6 -0.8061 3.7077 -2.7088 20 7 -1.6024 2.8943 -3.3675 21 14 -1.3567 4.4375 -1.0797 22 1 -2.0678 5.7176 -1.3259 23 1 -2.2700 3.4874 -0.3952 24 1 -0.1697 4.6874 -0.2229 25 6 1.8485 6.2001 -3.2026 26 6 0.7968 6.3358 -2.0997 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 3.5327 2.7581 1.5669 31 1 3.8516 1.1001 2.1319 32 1 5.3172 3.9942 0.5224 33 1 6.9095 3.2175 0.3424 34 1 5.5845 3.3699 -1.8181 35 1 6.0437 1.7077 -1.3671 36 1 1.7640 4.0550 -0.5553 37 1 3.1253 4.9660 -1.2520 38 1 -2.4753 2.6729 -3.0072 39 1 2.8586 6.5434 -2.9793 40 1 1.5196 6.3432 -4.2319 41 1 -0.2240 6.5681 -2.4034 42 1 1.1152 6.7681 -1.1510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451268874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:32 Heat of formation + Delta-G solvation = -170.930825 kcal Electronic energy + Delta-G solvation = -30200.863357 eV Core-core repulsion = 26081.627090 eV Total energy + Delta-G solvation = -4119.236267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.117 amu Computer time = 5.71 seconds Orbital eigenvalues (eV) -41.92412 -40.05826 -38.87136 -38.24566 -37.43610 -36.86301 -35.88071 -34.30759 -32.96113 -30.11385 -29.11232 -28.12800 -27.57813 -25.92789 -23.43713 -23.04474 -22.38941 -21.13861 -20.06012 -19.23439 -18.86420 -18.48407 -18.14242 -17.35290 -17.10927 -16.95944 -16.86952 -16.49620 -16.36537 -15.77880 -15.67355 -15.45703 -15.09133 -14.89366 -14.59441 -14.46459 -14.06972 -13.91407 -13.36151 -13.21045 -13.17937 -12.97720 -12.95705 -12.87162 -12.67163 -12.45192 -12.33017 -12.09898 -12.02800 -11.79824 -11.75025 -11.67126 -11.48300 -11.30632 -10.96734 -10.64827 -10.31228 -9.95380 -8.35380 -6.49778 -0.69106 0.90768 1.26943 1.33909 1.46618 1.49212 1.84427 2.33728 2.82422 2.91386 3.00351 3.08263 3.22361 3.45814 3.54045 3.62134 3.88502 3.99750 4.09132 4.10089 4.24647 4.29269 4.31048 4.36691 4.38841 4.47619 4.52735 4.62070 4.66809 4.73585 4.79005 4.90667 4.93334 4.97076 5.12702 5.31202 5.40144 5.46897 5.60640 5.99882 6.12068 6.59326 6.60877 7.27473 8.80541 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.007384 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.292093 B = 3791.177162 C = 4741.367041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.345 6.345 3 C 0.460 3.540 4 O -0.521 6.521 5 C 0.131 3.869 6 H 0.132 0.868 7 C 0.068 3.932 8 O -0.369 6.369 9 C 0.043 3.957 10 C 0.077 3.923 11 N -1.005 6.005 12 S 2.618 3.382 13 O -0.996 6.996 14 O -0.971 6.971 15 C -0.565 4.565 16 C -0.027 4.027 17 C -0.526 4.526 18 H 0.027 0.973 19 C 0.054 3.946 20 N -0.929 5.929 21 Si 0.933 3.067 22 H -0.269 1.269 23 H -0.299 1.299 24 H -0.226 1.226 25 C -0.167 4.167 26 C -0.177 4.177 27 H 0.135 0.865 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.142 0.858 32 H 0.069 0.931 33 H 0.146 0.854 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.267 0.733 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.657 -0.671 14.912 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.260 6.260 3 C 0.304 3.696 4 O -0.411 6.411 5 C 0.023 3.977 6 H 0.150 0.850 7 C -0.011 4.011 8 O -0.286 6.286 9 C -0.035 4.035 10 C -0.047 4.047 11 N -0.846 5.846 12 S 2.718 3.282 13 O -0.986 6.986 14 O -0.960 6.960 15 C -0.698 4.698 16 C -0.030 4.030 17 C -0.564 4.564 18 H 0.045 0.955 19 C -0.147 4.147 20 N -0.566 5.566 21 Si 0.758 3.242 22 H -0.195 1.195 23 H -0.226 1.226 24 H -0.148 1.148 25 C -0.204 4.204 26 C -0.215 4.215 27 H 0.153 0.847 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.160 0.840 32 H 0.087 0.913 33 H 0.163 0.837 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.075 0.925 39 H 0.134 0.866 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.248 -1.053 14.156 20.113 hybrid contribution -1.598 0.488 -0.060 1.672 sum 12.650 -0.565 14.096 18.948 Atomic orbital electron populations 1.23421 0.75077 1.05316 1.01818 1.86320 1.24481 1.31997 1.83177 1.23597 0.92011 0.82427 0.71603 1.90650 1.67803 1.36455 1.46228 1.21366 0.86327 0.97975 0.92029 0.84992 1.22948 0.82972 1.02526 0.92664 1.87995 1.21437 1.60625 1.58544 1.23306 1.03738 0.90959 0.85507 1.22538 0.78428 1.03114 1.00596 1.58125 1.21293 1.60433 1.44736 1.04602 0.72376 0.77579 0.73627 1.93430 1.68840 1.87028 1.49325 1.93480 1.59522 1.57806 1.85224 1.30246 1.09530 1.18852 1.11174 1.18733 0.98346 0.88146 0.97734 1.20371 1.01337 1.28347 1.06315 0.95467 1.25664 0.95883 0.93383 0.99802 1.70043 1.09898 1.35869 1.40828 0.85998 0.79532 0.77615 0.81087 1.19464 1.22599 1.14824 1.23125 0.98852 1.01531 0.96856 1.23015 0.98439 0.99910 1.00121 0.84651 0.94862 0.90963 0.91181 0.84023 0.91280 0.83677 0.87566 0.88539 0.83487 0.83874 0.92453 0.86596 0.90077 0.90504 0.86941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.22 10.56 113.37 1.20 2.42 16 2 O -0.35 -11.73 10.57 -49.53 -0.52 -12.26 16 3 C 0.46 16.06 4.27 71.24 0.30 16.36 16 4 O -0.52 -21.28 11.53 29.40 0.34 -20.94 16 5 C 0.13 3.46 3.50 44.22 0.15 3.62 16 6 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 7 C 0.07 1.27 6.27 72.08 0.45 1.72 16 8 O -0.37 -6.50 10.74 -148.98 -1.60 -8.10 16 9 C 0.04 0.62 6.98 72.08 0.50 1.13 16 10 C 0.08 1.61 6.50 86.35 0.56 2.17 16 11 N -1.00 -30.21 3.26 -493.26 -1.61 -31.83 16 12 S 2.62 113.18 3.99 -56.49 -0.23 112.95 16 13 O -1.00 -46.77 16.80 -127.65 -2.14 -48.91 16 14 O -0.97 -50.91 12.91 -117.88 -1.52 -52.43 16 15 C -0.57 -22.56 5.77 71.98 0.42 -22.15 16 16 C -0.03 -1.28 1.11 -52.93 -0.06 -1.34 16 17 C -0.53 -31.48 7.36 25.60 0.19 -31.29 16 18 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 19 C 0.05 3.27 5.47 84.65 0.46 3.74 16 20 N -0.93 -60.47 13.96 21.45 0.30 -60.18 16 21 Si 0.93 46.63 24.84 68.60 1.70 48.33 16 22 H -0.27 -12.65 7.07 99.48 0.70 -11.95 16 23 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 24 H -0.23 -10.28 5.60 99.48 0.56 -9.72 16 25 C -0.17 -6.62 9.88 30.60 0.30 -6.32 16 26 C -0.18 -7.12 7.40 30.59 0.23 -6.89 16 27 H 0.14 3.28 8.14 -2.38 -0.02 3.26 16 28 H 0.03 1.43 8.13 -2.39 -0.02 1.41 16 29 H 0.07 2.12 8.13 -2.39 -0.02 2.10 16 30 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 31 H 0.14 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.15 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.11 2.19 7.21 -2.39 -0.02 2.18 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.15 5.99 4.17 -2.39 -0.01 5.98 16 37 H 0.14 4.22 7.95 -2.39 -0.02 4.20 16 38 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 39 H 0.12 3.65 8.09 -2.39 -0.02 3.63 16 40 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 41 H 0.08 3.32 6.80 -2.39 -0.02 3.30 16 42 H 0.11 3.71 8.14 -2.38 -0.02 3.69 16 Total: -1.00 -86.16 343.56 0.30 -85.86 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.88 Total: 24.33 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 4.71 Total: -36.83 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -1.31 Total: -92.00 kcal Atomic # 8 Polarization: -137.19 SS G_CDS: -5.45 Total: -142.64 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.70 Total: 48.33 kcal Atomic # 16 Polarization: 113.18 SS G_CDS: -0.23 Total: 112.95 kcal Total: -86.16 0.30 -85.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451268874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.072 kcal (2) G-P(sol) polarization free energy of solvation -86.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.71 seconds