Wall clock time and date at job start Tue Mar 31 2020 17:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 116.99707 * 2 1 4 4 O 1.20826 * 120.00255 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99449 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46932 * 180.02562 * 5 3 2 7 7 C 1.36751 * 120.00120 * 269.99872 * 6 5 3 8 8 H 1.07995 * 119.99743 * 140.38134 * 7 6 5 9 9 C 1.39095 * 119.99739 * 320.38863 * 7 6 5 10 10 N 1.31336 * 119.99794 * 162.14354 * 9 7 6 11 11 Si 1.86797 * 119.99922 * 342.13714 * 9 7 6 12 12 H 1.48500 * 109.47436 * 95.21206 * 11 9 7 13 13 H 1.48507 * 109.47240 * 215.21336 * 11 9 7 14 14 H 1.48503 * 109.47306 * 335.21169 * 11 9 7 15 15 C 1.34778 * 120.00285 * 89.99618 * 6 5 3 16 16 O 1.21789 * 119.99687 * 354.47055 * 15 6 5 17 17 C 1.41796 * 120.00297 * 174.73592 * 15 6 5 18 18 C 1.35137 * 120.00231 * 184.81637 * 17 15 6 19 19 C 1.46942 * 120.00147 * 185.27259 * 18 17 15 20 20 C 1.39992 * 120.11095 * 5.46977 * 19 18 17 21 21 C 1.37718 * 119.97195 * 179.97438 * 20 19 18 22 22 C 1.38897 * 120.25340 * 0.02562 * 21 20 19 23 23 C 1.39600 * 120.10315 * 359.97438 * 22 21 20 24 24 C 1.38073 * 120.00788 * 359.74126 * 23 22 21 25 25 O 1.36540 * 108.58567 * 179.97438 * 23 22 21 26 26 C 1.43984 * 105.45866 * 342.68378 * 25 23 22 27 27 O 1.36400 * 131.32239 * 179.97438 * 22 21 20 28 28 H 1.08998 * 109.47055 * 299.99867 * 1 2 3 29 29 H 1.09004 * 109.47225 * 59.99501 * 1 2 3 30 30 H 1.08998 * 109.47053 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47323 * 59.99970 * 5 3 2 32 32 H 1.09003 * 109.47018 * 300.00356 * 5 3 2 33 33 H 0.97005 * 120.00035 * 179.97438 * 10 9 7 34 34 H 1.08005 * 119.99782 * 4.82514 * 17 15 6 35 35 H 1.07998 * 120.00162 * 5.27029 * 18 17 15 36 36 H 1.08000 * 120.01086 * 359.95458 * 20 19 18 37 37 H 1.08004 * 119.86963 * 179.97438 * 21 20 19 38 38 H 1.07994 * 120.05469 * 180.27671 * 24 23 22 39 39 H 1.08994 * 110.56161 * 268.63748 * 26 25 23 40 40 H 1.08997 * 110.55971 * 145.78144 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1751 3.3362 -1.1838 8 1 3.8566 4.3626 -1.2903 9 6 4.7820 2.6818 -2.2507 10 7 4.6603 3.1586 -3.4684 11 14 5.7701 1.1251 -1.9516 12 1 4.9067 -0.0611 -2.1814 13 1 6.9250 1.0849 -2.8843 14 1 6.2642 1.1138 -0.5512 15 6 4.1732 3.3252 1.1677 16 8 3.9047 2.7735 2.2197 17 6 4.6821 4.6488 1.1709 18 6 4.9659 5.2607 2.3419 19 6 5.3825 6.6698 2.3524 20 6 5.3763 7.4129 1.1660 21 6 5.7669 8.7335 1.1793 22 6 6.1682 9.3327 2.3664 23 6 6.1770 8.5981 3.5534 24 6 5.7813 7.2752 3.5498 25 8 6.6078 9.4091 4.5639 26 6 7.2504 10.5223 3.9151 27 8 6.5925 10.6005 2.6368 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7804 0.8891 33 1 5.0837 2.7025 -4.2125 34 1 4.8427 5.1678 0.2375 35 1 4.8865 4.7142 3.2700 36 1 5.0657 6.9506 0.2407 37 1 5.7619 9.3051 0.2629 38 1 5.7836 6.7075 4.4685 39 1 8.3151 10.3279 3.7866 40 1 7.0932 11.4392 4.4831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491879339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:41 Heat of formation + Delta-G solvation = -108.462939 kcal Electronic energy + Delta-G solvation = -27699.158064 eV Core-core repulsion = 23447.186657 eV Total energy + Delta-G solvation = -4251.971407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17826 -40.09091 -38.98660 -37.99205 -36.36612 -35.98844 -35.00619 -33.16424 -32.17307 -30.70295 -29.64150 -28.51501 -26.71425 -25.87466 -25.14454 -23.69891 -22.90504 -21.45967 -20.43572 -19.03831 -17.97941 -17.68505 -17.55203 -17.32647 -16.98005 -16.59576 -16.16313 -15.85079 -15.51603 -15.25109 -14.63631 -14.51581 -14.01920 -13.90602 -13.75855 -13.70729 -13.20885 -13.07356 -13.04096 -12.95343 -12.70989 -12.43044 -12.04635 -11.92671 -11.72805 -11.58504 -11.29328 -11.14004 -10.83774 -10.56325 -10.36214 -10.17742 -9.94756 -9.51010 -9.44611 -8.90903 -8.69295 -8.10255 -7.64696 -6.66483 -4.28442 0.66280 1.24291 2.14202 2.69617 2.82286 2.90751 3.08246 3.11011 3.14818 3.33394 3.68891 3.91625 4.14071 4.32522 4.43839 4.50978 4.70622 4.82075 4.99864 5.09122 5.11785 5.22902 5.35337 5.42582 5.43687 5.47303 5.61284 5.76379 5.77255 5.80797 6.00181 6.04032 6.09660 6.27089 6.38893 6.44585 6.81663 6.86155 6.93909 7.05666 7.10321 7.84240 8.04807 8.36844 8.72837 9.07525 9.41996 10.42853 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.002873 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.855764 B = 9744.966872 C =10664.768206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.450 3.550 4 O -0.486 6.486 5 C 0.106 3.894 6 N -0.436 5.436 7 C -0.340 4.340 8 H 0.110 0.890 9 C 0.066 3.934 10 N -0.847 5.847 11 Si 0.865 3.135 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.254 1.254 15 C 0.514 3.486 16 O -0.596 6.596 17 C -0.139 4.139 18 C -0.074 4.074 19 C -0.036 4.036 20 C -0.096 4.096 21 C -0.096 4.096 22 C 0.023 3.977 23 C 0.027 3.973 24 C -0.089 4.089 25 O -0.311 6.311 26 C 0.213 3.787 27 O -0.311 6.311 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.279 0.721 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.150 0.850 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.082 0.918 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.298 5.572 8.045 10.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.290 3.710 4 O -0.371 6.371 5 C -0.019 4.019 6 N -0.156 5.156 7 C -0.467 4.467 8 H 0.128 0.872 9 C -0.143 4.143 10 N -0.480 5.480 11 Si 0.692 3.308 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.178 1.178 15 C 0.308 3.692 16 O -0.483 6.483 17 C -0.159 4.159 18 C -0.095 4.095 19 C -0.037 4.037 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.021 4.021 23 C -0.017 4.017 24 C -0.108 4.108 25 O -0.228 6.228 26 C 0.102 3.898 27 O -0.227 6.227 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.132 0.868 33 H 0.090 0.910 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.168 0.832 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.099 0.901 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.934 5.786 8.418 10.628 hybrid contribution 0.353 -0.508 -0.207 0.653 sum 3.287 5.278 8.211 10.299 Atomic orbital electron populations 1.23141 0.77488 1.02847 1.02292 1.86518 1.22717 1.34494 1.84960 1.24641 0.92711 0.81247 0.72378 1.90621 1.66515 1.36229 1.43738 1.21417 0.87102 0.88568 1.04835 1.43339 1.56953 1.08516 1.06766 1.19114 1.39963 1.00170 0.87493 0.87221 1.25453 0.95748 0.98320 0.94755 1.69680 1.39361 1.40366 0.98632 0.87075 0.80880 0.82738 0.80129 1.19473 1.20526 1.17792 1.17096 0.81357 0.87703 0.83047 1.90702 1.56456 1.69691 1.31433 1.22276 0.98981 0.95473 0.99149 1.22063 0.97240 0.91102 0.99107 1.18783 0.98878 0.94040 0.91981 1.21388 0.98586 0.92521 0.98865 1.20022 1.01839 0.94648 0.94928 1.19979 1.03578 0.83274 0.95239 1.19609 1.03663 0.92972 0.85489 1.20181 1.01535 0.89971 0.99082 1.87358 1.73146 1.32950 1.29332 1.25567 0.95082 0.90578 0.78622 1.87314 1.72526 1.25358 1.37508 0.92297 0.92181 0.88708 0.87889 0.86842 0.91022 0.84239 0.84958 0.83232 0.84502 0.84431 0.90076 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.83 10.57 -39.26 -0.41 -7.25 16 3 C 0.45 9.86 8.02 36.01 0.29 10.15 16 4 O -0.49 -11.98 16.18 -18.75 -0.30 -12.29 16 5 C 0.11 2.31 4.71 -5.19 -0.02 2.29 16 6 N -0.44 -10.32 1.64 -119.29 -0.20 -10.52 16 7 C -0.34 -8.47 8.74 -15.04 -0.13 -8.60 16 8 H 0.11 2.86 7.16 -52.49 -0.38 2.48 16 9 C 0.07 1.65 5.37 -17.45 -0.09 1.55 16 10 N -0.85 -22.02 13.95 55.50 0.77 -21.25 16 11 Si 0.87 18.54 24.83 -169.99 -4.22 14.32 16 12 H -0.27 -5.48 6.73 56.52 0.38 -5.10 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.25 -5.38 7.10 56.52 0.40 -4.98 16 15 C 0.51 11.80 7.39 -14.90 -0.11 11.69 16 16 O -0.60 -14.57 15.77 5.11 0.08 -14.49 16 17 C -0.14 -2.70 8.49 -39.33 -0.33 -3.03 16 18 C -0.07 -1.25 9.40 -37.16 -0.35 -1.60 16 19 C -0.04 -0.54 5.86 -105.06 -0.62 -1.15 16 20 C -0.10 -1.33 9.38 -39.11 -0.37 -1.70 16 21 C -0.10 -1.24 10.04 -39.53 -0.40 -1.64 16 22 C 0.02 0.32 7.16 -38.83 -0.28 0.04 16 23 C 0.03 0.37 7.13 -39.13 -0.28 0.09 16 24 C -0.09 -1.22 9.80 -38.99 -0.38 -1.60 16 25 O -0.31 -3.92 11.41 -45.82 -0.52 -4.44 16 26 C 0.21 1.98 8.88 101.05 0.90 2.88 16 27 O -0.31 -3.88 11.40 -45.36 -0.52 -4.40 16 28 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 29 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 2.20 3.19 -51.93 -0.17 2.03 16 32 H 0.11 2.28 7.50 -51.93 -0.39 1.89 16 33 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.14 2.60 4.62 -52.48 -0.24 2.36 16 35 H 0.13 2.21 7.48 -52.49 -0.39 1.82 16 36 H 0.15 2.02 6.23 -52.49 -0.33 1.69 16 37 H 0.14 1.50 8.06 -52.48 -0.42 1.07 16 38 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 348.93 15.07 5.26 5.26 Total: -1.00 -31.63 348.93 -5.18 -36.81 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -4.01 Total: 7.28 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -1.11 Total: 10.96 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.58 Total: -31.76 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -1.68 Total: -42.87 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -4.22 Total: 14.32 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.63 -5.18 -36.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491879339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.654 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds