Wall clock time and date at job start Tue Mar 31 2020 17:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 116.99707 * 2 1 4 4 O 1.20826 * 120.00255 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99449 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46932 * 180.02562 * 5 3 2 7 7 C 1.36751 * 120.00120 * 269.99872 * 6 5 3 8 8 H 1.07995 * 119.99743 * 140.38134 * 7 6 5 9 9 C 1.39095 * 119.99739 * 320.38863 * 7 6 5 10 10 N 1.31336 * 119.99794 * 162.14354 * 9 7 6 11 11 Si 1.86797 * 119.99922 * 342.13714 * 9 7 6 12 12 H 1.48500 * 109.47436 * 95.21206 * 11 9 7 13 13 H 1.48507 * 109.47240 * 215.21336 * 11 9 7 14 14 H 1.48503 * 109.47306 * 335.21169 * 11 9 7 15 15 C 1.34778 * 120.00285 * 89.99618 * 6 5 3 16 16 O 1.21789 * 119.99687 * 354.47055 * 15 6 5 17 17 C 1.41796 * 120.00297 * 174.73592 * 15 6 5 18 18 C 1.35137 * 120.00231 * 184.81637 * 17 15 6 19 19 C 1.46942 * 120.00147 * 185.27259 * 18 17 15 20 20 C 1.39992 * 120.11095 * 5.46977 * 19 18 17 21 21 C 1.37718 * 119.97195 * 179.97438 * 20 19 18 22 22 C 1.38897 * 120.25340 * 0.02562 * 21 20 19 23 23 C 1.39600 * 120.10315 * 359.97438 * 22 21 20 24 24 C 1.38073 * 120.00788 * 359.74126 * 23 22 21 25 25 O 1.36540 * 108.58567 * 179.97438 * 23 22 21 26 26 C 1.43984 * 105.45866 * 342.68378 * 25 23 22 27 27 O 1.36400 * 131.32239 * 179.97438 * 22 21 20 28 28 H 1.08998 * 109.47055 * 299.99867 * 1 2 3 29 29 H 1.09004 * 109.47225 * 59.99501 * 1 2 3 30 30 H 1.08998 * 109.47053 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47323 * 59.99970 * 5 3 2 32 32 H 1.09003 * 109.47018 * 300.00356 * 5 3 2 33 33 H 0.97005 * 120.00035 * 179.97438 * 10 9 7 34 34 H 1.08005 * 119.99782 * 4.82514 * 17 15 6 35 35 H 1.07998 * 120.00162 * 5.27029 * 18 17 15 36 36 H 1.08000 * 120.01086 * 359.95458 * 20 19 18 37 37 H 1.08004 * 119.86963 * 179.97438 * 21 20 19 38 38 H 1.07994 * 120.05469 * 180.27671 * 24 23 22 39 39 H 1.08994 * 110.56161 * 268.63748 * 26 25 23 40 40 H 1.08997 * 110.55971 * 145.78144 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1751 3.3362 -1.1838 8 1 3.8566 4.3626 -1.2903 9 6 4.7820 2.6818 -2.2507 10 7 4.6603 3.1586 -3.4684 11 14 5.7701 1.1251 -1.9516 12 1 4.9067 -0.0611 -2.1814 13 1 6.9250 1.0849 -2.8843 14 1 6.2642 1.1138 -0.5512 15 6 4.1732 3.3252 1.1677 16 8 3.9047 2.7735 2.2197 17 6 4.6821 4.6488 1.1709 18 6 4.9659 5.2607 2.3419 19 6 5.3825 6.6698 2.3524 20 6 5.3763 7.4129 1.1660 21 6 5.7669 8.7335 1.1793 22 6 6.1682 9.3327 2.3664 23 6 6.1770 8.5981 3.5534 24 6 5.7813 7.2752 3.5498 25 8 6.6078 9.4091 4.5639 26 6 7.2504 10.5223 3.9151 27 8 6.5925 10.6005 2.6368 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7804 0.8891 33 1 5.0837 2.7025 -4.2125 34 1 4.8427 5.1678 0.2375 35 1 4.8865 4.7142 3.2700 36 1 5.0657 6.9506 0.2407 37 1 5.7619 9.3051 0.2629 38 1 5.7836 6.7075 4.4685 39 1 8.3151 10.3279 3.7866 40 1 7.0932 11.4392 4.4831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491879339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:40 Heat of formation + Delta-G solvation = -127.955925 kcal Electronic energy + Delta-G solvation = -27700.003343 eV Core-core repulsion = 23447.186657 eV Total energy + Delta-G solvation = -4252.816686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.13893 -41.76918 -40.62766 -39.15551 -37.61878 -37.32228 -36.79311 -34.53830 -34.03873 -31.81316 -31.06002 -29.81768 -28.01970 -27.13609 -26.58446 -24.99708 -23.98465 -22.88145 -21.92738 -20.71228 -19.25332 -19.03470 -18.86043 -18.72745 -18.31318 -17.91234 -17.49900 -17.23695 -17.04501 -16.84575 -16.11135 -15.71104 -15.49620 -15.18843 -14.90150 -14.89026 -14.75200 -14.53502 -14.39384 -14.09633 -14.01522 -13.93964 -13.54464 -13.26009 -13.14373 -12.98702 -12.78661 -12.35198 -12.26100 -11.99906 -11.90046 -11.82142 -11.69201 -11.21732 -10.73295 -10.71624 -9.95319 -9.76745 -8.83615 -8.53936 -6.21242 -0.58986 0.17874 0.80634 1.12438 1.21481 1.36979 1.45360 1.59627 1.76247 2.14965 2.31406 2.46683 2.60457 2.72921 3.03309 3.40424 3.71427 3.80608 3.85850 3.93618 3.96509 4.05431 4.11943 4.12764 4.26212 4.29876 4.30903 4.43727 4.46674 4.64152 4.65777 4.94285 4.96634 5.08599 5.15105 5.20405 5.29117 5.33729 5.48144 5.64299 6.00493 6.07210 6.12351 6.71842 6.86942 7.24214 7.61663 8.59060 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.002873 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.855764 B = 9744.966872 C =10664.768206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.451 3.549 4 O -0.524 6.524 5 C 0.098 3.902 6 N -0.450 5.450 7 C -0.343 4.343 8 H 0.083 0.917 9 C 0.030 3.970 10 N -0.888 5.888 11 Si 0.914 3.086 12 H -0.249 1.249 13 H -0.275 1.275 14 H -0.251 1.251 15 C 0.513 3.487 16 O -0.617 6.617 17 C -0.184 4.184 18 C -0.027 4.027 19 C -0.060 4.060 20 C -0.092 4.092 21 C -0.101 4.101 22 C 0.029 3.971 23 C 0.017 3.983 24 C -0.082 4.082 25 O -0.321 6.321 26 C 0.204 3.796 27 O -0.320 6.320 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.142 0.858 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.284 0.716 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.105 0.895 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.177 5.666 9.443 11.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.293 3.707 4 O -0.411 6.411 5 C -0.027 4.027 6 N -0.169 5.169 7 C -0.470 4.470 8 H 0.100 0.900 9 C -0.176 4.176 10 N -0.523 5.523 11 Si 0.738 3.262 12 H -0.175 1.175 13 H -0.201 1.201 14 H -0.174 1.174 15 C 0.309 3.691 16 O -0.506 6.506 17 C -0.204 4.204 18 C -0.048 4.048 19 C -0.060 4.060 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.016 4.016 23 C -0.027 4.027 24 C -0.100 4.100 25 O -0.238 6.238 26 C 0.093 3.907 27 O -0.237 6.237 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.160 0.840 31 H 0.126 0.874 32 H 0.147 0.853 33 H 0.094 0.906 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.165 0.835 37 H 0.174 0.826 38 H 0.172 0.828 39 H 0.123 0.877 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.812 5.869 9.823 12.061 hybrid contribution 0.068 -0.306 -0.449 0.548 sum 3.881 5.562 9.374 11.570 Atomic orbital electron populations 1.23564 0.74888 1.05909 1.02185 1.86490 1.25152 1.32365 1.84110 1.24636 0.92878 0.81635 0.71530 1.90602 1.67274 1.37599 1.45670 1.21550 0.87497 0.87852 1.05776 1.43352 1.57960 1.09227 1.06405 1.18885 1.40346 0.99537 0.88244 0.89969 1.26005 0.96178 1.01220 0.94185 1.69756 1.40815 1.42298 0.99471 0.86288 0.79820 0.79978 0.80140 1.17462 1.20057 1.17402 1.17584 0.80413 0.88536 0.82577 1.90662 1.57547 1.70516 1.31889 1.22077 1.03308 0.94811 1.00222 1.22202 0.92735 0.91714 0.98105 1.18672 1.01245 0.93125 0.93006 1.21455 0.97923 0.93020 0.98616 1.20195 1.01530 0.94347 0.95831 1.20188 1.02351 0.83782 0.95293 1.19704 1.03863 0.93144 0.86012 1.20297 1.00278 0.90291 0.99147 1.87345 1.73456 1.33536 1.29484 1.26164 0.95809 0.91131 0.77572 1.87306 1.72699 1.24636 1.39018 0.92312 0.92507 0.84024 0.87367 0.85250 0.90617 0.84301 0.84662 0.83469 0.82572 0.82792 0.87737 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.36 -13.04 10.57 -51.41 -0.54 -13.59 16 3 C 0.45 19.82 8.02 71.24 0.57 20.39 16 4 O -0.52 -26.36 16.18 21.96 0.36 -26.00 16 5 C 0.10 4.27 4.71 85.63 0.40 4.67 16 6 N -0.45 -21.75 1.64 -649.48 -1.06 -22.81 16 7 C -0.34 -17.71 8.74 84.13 0.73 -16.97 16 8 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 9 C 0.03 1.51 5.37 84.97 0.46 1.96 16 10 N -0.89 -47.40 13.95 21.69 0.30 -47.10 16 11 Si 0.91 37.86 24.83 68.60 1.70 39.56 16 12 H -0.25 -9.49 6.73 99.48 0.67 -8.82 16 13 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 14 H -0.25 -10.16 7.10 99.48 0.71 -9.45 16 15 C 0.51 24.13 7.39 85.12 0.63 24.76 16 16 O -0.62 -30.51 15.77 -4.63 -0.07 -30.58 16 17 C -0.18 -7.38 8.49 22.44 0.19 -7.19 16 18 C -0.03 -0.90 9.40 23.84 0.22 -0.68 16 19 C -0.06 -1.73 5.86 -20.15 -0.12 -1.85 16 20 C -0.09 -2.54 9.38 22.57 0.21 -2.33 16 21 C -0.10 -2.49 10.04 22.30 0.22 -2.27 16 22 C 0.03 0.72 7.16 22.76 0.16 0.89 16 23 C 0.02 0.43 7.13 22.56 0.16 0.60 16 24 C -0.08 -2.10 9.80 22.65 0.22 -1.88 16 25 O -0.32 -7.27 11.41 -76.52 -0.87 -8.15 16 26 C 0.20 3.14 8.88 113.37 1.01 4.14 16 27 O -0.32 -7.19 11.40 -74.88 -0.85 -8.04 16 28 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 29 H 0.06 1.57 8.13 -2.38 -0.02 1.55 16 30 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.11 4.53 3.19 -2.39 -0.01 4.53 16 32 H 0.13 5.13 7.50 -2.39 -0.02 5.11 16 33 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 34 H 0.14 5.50 4.62 -2.91 -0.01 5.49 16 35 H 0.14 4.44 7.48 -2.91 -0.02 4.41 16 36 H 0.15 4.11 6.23 -2.91 -0.02 4.09 16 37 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 38 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 39 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.16 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -69.62 348.93 6.30 -63.32 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 1.07 Total: 27.19 kcal Atomic # 6 Polarization: 19.91 SS G_CDS: 6.28 Total: 26.19 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -0.76 Total: -69.91 kcal Atomic # 8 Polarization: -84.37 SS G_CDS: -1.99 Total: -86.36 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 1.70 Total: 39.56 kcal Total: -69.62 6.30 -63.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491879339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.632 kcal (2) G-P(sol) polarization free energy of solvation -69.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds