Wall clock time and date at job start Tue Mar 31 2020 17:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 117.00409 * 2 1 4 4 O 1.20823 * 119.99661 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99887 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.46860 * 180.02562 * 5 3 2 7 7 C 1.36743 * 119.99949 * 270.00088 * 6 5 3 8 8 H 1.07996 * 120.00073 * 198.45743 * 7 6 5 9 9 C 1.39097 * 120.00063 * 18.46114 * 7 6 5 10 10 N 1.31345 * 119.99909 * 6.05437 * 9 7 6 11 11 Si 1.86799 * 120.00053 * 186.05917 * 9 7 6 12 12 H 1.48497 * 109.46963 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47433 * 119.99558 * 11 9 7 14 14 H 1.48502 * 109.47118 * 239.99746 * 11 9 7 15 15 C 1.34767 * 119.99888 * 90.00135 * 6 5 3 16 16 O 1.21784 * 120.00220 * 354.67015 * 15 6 5 17 17 C 1.41804 * 120.00257 * 174.66959 * 15 6 5 18 18 C 1.35133 * 120.00450 * 186.74799 * 17 15 6 19 19 C 1.46948 * 119.99795 * 10.25845 * 18 17 15 20 20 C 1.39986 * 120.11249 * 44.16559 * 19 18 17 21 21 C 1.37713 * 119.97057 * 180.02562 * 20 19 18 22 22 C 1.38899 * 120.25979 * 359.96816 * 21 20 19 23 23 C 1.39607 * 120.09880 * 0.02934 * 22 21 20 24 24 C 1.38074 * 120.00471 * 359.97438 * 23 22 21 25 25 O 1.36534 * 108.58657 * 179.97438 * 23 22 21 26 26 C 1.43980 * 105.45723 * 17.32544 * 25 23 22 27 27 O 1.36393 * 131.33221 * 180.02562 * 22 21 20 28 28 H 1.09003 * 109.46795 * 299.99841 * 1 2 3 29 29 H 1.09005 * 109.46811 * 59.99393 * 1 2 3 30 30 H 1.08997 * 109.47434 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47034 * 60.00278 * 5 3 2 32 32 H 1.09000 * 109.47563 * 300.00097 * 5 3 2 33 33 H 0.97008 * 119.99811 * 185.00448 * 10 9 7 34 34 H 1.08003 * 119.99363 * 6.75547 * 17 15 6 35 35 H 1.07999 * 120.00027 * 190.25286 * 18 17 15 36 36 H 1.07997 * 120.01620 * 0.02562 * 20 19 18 37 37 H 1.08004 * 119.87413 * 180.02562 * 21 20 19 38 38 H 1.08005 * 120.05163 * 179.97438 * 24 23 22 39 39 H 1.08993 * 110.56125 * 214.20471 * 26 25 23 40 40 H 1.09003 * 110.56205 * 91.35547 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6796 0.0011 7 6 4.1761 3.3355 -1.1829 8 1 4.7545 4.2472 -1.2066 9 6 3.6288 2.8285 -2.3569 10 7 2.8279 1.7884 -2.3124 11 14 4.0327 3.6268 -3.9967 12 1 4.9502 4.7734 -3.7763 13 1 4.6873 2.6320 -4.8837 14 1 2.7813 4.1102 -4.6335 15 6 4.1725 3.3255 1.1684 16 8 3.9066 2.7729 2.2206 17 6 4.6827 4.6485 1.1717 18 6 5.0024 5.2466 2.3405 19 6 5.0380 4.4613 3.5821 20 6 5.6444 3.1997 3.5980 21 6 5.6756 2.4661 4.7630 22 6 5.1077 2.9730 5.9248 23 6 4.5012 4.2304 5.9167 24 6 4.4656 4.9724 4.7528 25 8 4.0260 4.4924 7.1696 26 6 4.7054 3.5674 8.0389 27 8 5.0110 2.4522 7.1817 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.9564 0.7804 -0.8892 32 1 3.9558 0.7807 0.8908 33 1 2.5041 1.3901 -3.1355 34 1 4.8157 5.1782 0.2399 35 1 5.2319 6.3017 2.3622 36 1 6.0876 2.8020 2.6970 37 1 6.1442 1.4930 4.7736 38 1 3.9962 5.9451 4.7456 39 1 4.0513 3.2566 8.8535 40 1 5.6209 4.0113 8.4299 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491879341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:47 Heat of formation + Delta-G solvation = -94.533500 kcal Electronic energy + Delta-G solvation = -28925.671528 eV Core-core repulsion = 24674.304147 eV Total energy + Delta-G solvation = -4251.367381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -41.80032 -39.65760 -38.77251 -37.32937 -36.00924 -35.46518 -34.61921 -32.80312 -31.71470 -30.17467 -29.25799 -28.16354 -26.36608 -25.60765 -24.92151 -23.26032 -22.46030 -21.34566 -19.91177 -19.16383 -17.69017 -17.56610 -17.07023 -16.76207 -16.55847 -16.27411 -15.65239 -15.43027 -15.19952 -14.61830 -14.36515 -14.21030 -13.99376 -13.52897 -13.39750 -13.26909 -13.03705 -12.72528 -12.54980 -12.44351 -12.35336 -12.14401 -11.69510 -11.49329 -11.39829 -11.22028 -10.96665 -10.77670 -10.69983 -10.53733 -10.32762 -9.79412 -9.61279 -9.07051 -8.95954 -8.64541 -8.38609 -7.99661 -7.14137 -6.61532 -4.12758 1.15195 1.75482 2.21666 3.02681 3.08508 3.09955 3.13742 3.65475 3.69055 3.75296 4.00705 4.10915 4.33473 4.70543 4.75779 4.88762 4.95949 4.99824 5.30044 5.46662 5.49786 5.64493 5.72455 5.80067 5.81703 5.92594 5.97625 6.12993 6.25555 6.37399 6.43490 6.46252 6.60488 6.65083 6.75248 6.84506 6.95607 7.12736 7.19601 7.42558 7.50392 7.58168 8.11015 8.83055 9.17195 9.24836 9.68427 10.41205 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.015319 B = 0.003673 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.370341 B = 7621.051202 C = 8827.901306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.376 6.376 3 C 0.494 3.506 4 O -0.508 6.508 5 C 0.157 3.843 6 N -0.412 5.412 7 C -0.320 4.320 8 H 0.109 0.891 9 C 0.036 3.964 10 N -0.873 5.873 11 Si 0.937 3.063 12 H -0.266 1.266 13 H -0.278 1.278 14 H -0.280 1.280 15 C 0.474 3.526 16 O -0.590 6.590 17 C -0.148 4.148 18 C -0.085 4.085 19 C -0.031 4.031 20 C -0.009 4.009 21 C -0.116 4.116 22 C 0.028 3.972 23 C 0.005 3.995 24 C -0.088 4.088 25 O -0.316 6.316 26 C 0.215 3.785 27 O -0.315 6.315 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.276 0.724 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 1.330 8.282 9.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.294 6.294 3 C 0.336 3.664 4 O -0.393 6.393 5 C 0.031 3.969 6 N -0.127 5.127 7 C -0.448 4.448 8 H 0.127 0.873 9 C -0.168 4.168 10 N -0.512 5.512 11 Si 0.763 3.237 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.206 1.206 15 C 0.267 3.733 16 O -0.478 6.478 17 C -0.169 4.169 18 C -0.106 4.106 19 C -0.032 4.032 20 C -0.028 4.028 21 C -0.135 4.135 22 C -0.016 4.016 23 C -0.038 4.038 24 C -0.107 4.107 25 O -0.233 6.233 26 C 0.102 3.898 27 O -0.231 6.231 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.145 0.855 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.546 1.182 8.744 9.926 hybrid contribution -0.532 0.357 -0.957 1.152 sum 4.014 1.540 7.787 8.895 Atomic orbital electron populations 1.22901 0.78888 1.01673 1.01506 1.86444 1.21503 1.35613 1.85800 1.23680 0.92041 0.80479 0.70194 1.90509 1.66499 1.36409 1.45852 1.20589 0.87561 0.85189 1.03533 1.43551 1.54917 1.08439 1.05804 1.19892 1.31320 1.09601 0.83995 0.87324 1.25358 0.94134 0.96730 1.00623 1.69543 1.29961 1.22616 1.29126 0.85692 0.78334 0.79079 0.80552 1.19060 1.20373 1.20594 1.17089 0.85217 0.87162 0.83810 1.90767 1.57964 1.68842 1.30252 1.22304 0.99432 0.96881 0.98279 1.21960 0.99764 0.98069 0.90821 1.18503 0.98238 0.94614 0.91814 1.20837 0.95037 0.91701 0.95239 1.19802 1.02936 1.01317 0.89447 1.19853 1.02336 0.92547 0.86867 1.19438 1.01744 0.95515 0.87120 1.19978 1.02196 0.99657 0.88865 1.87305 1.62641 1.57727 1.15585 1.25446 0.96281 0.77365 0.90662 1.87263 1.87777 1.32236 1.15850 0.93254 0.92781 0.89701 0.85478 0.90215 0.91298 0.85020 0.85532 0.85248 0.85532 0.85489 0.85961 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.81 10.56 101.05 1.07 1.87 16 2 O -0.38 -8.25 10.56 -39.26 -0.41 -8.66 16 3 C 0.49 12.27 5.82 36.01 0.21 12.48 16 4 O -0.51 -14.23 15.76 -18.75 -0.30 -14.53 16 5 C 0.16 3.66 5.21 -5.19 -0.03 3.63 16 6 N -0.41 -9.82 2.10 -119.29 -0.25 -10.07 16 7 C -0.32 -7.56 9.19 -15.04 -0.14 -7.69 16 8 H 0.11 2.34 5.82 -52.49 -0.31 2.04 16 9 C 0.04 0.85 5.24 -17.44 -0.09 0.75 16 10 N -0.87 -21.62 8.16 55.50 0.45 -21.16 16 11 Si 0.94 18.45 29.56 -169.99 -5.03 13.43 16 12 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 13 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 14 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 15 C 0.47 10.84 6.48 -14.90 -0.10 10.74 16 16 O -0.59 -14.38 11.55 5.11 0.06 -14.32 16 17 C -0.15 -2.83 9.06 -39.32 -0.36 -3.19 16 18 C -0.08 -1.39 9.80 -37.16 -0.36 -1.76 16 19 C -0.03 -0.55 4.50 -105.06 -0.47 -1.02 16 20 C -0.01 -0.17 6.58 -39.12 -0.26 -0.43 16 21 C -0.12 -1.98 10.04 -39.53 -0.40 -2.38 16 22 C 0.03 0.49 7.16 -38.83 -0.28 0.21 16 23 C 0.01 0.09 7.13 -39.13 -0.28 -0.19 16 24 C -0.09 -1.50 9.80 -38.99 -0.38 -1.89 16 25 O -0.32 -5.00 11.41 -45.80 -0.52 -5.52 16 26 C 0.21 2.60 8.88 101.05 0.90 3.50 16 27 O -0.31 -4.98 11.39 -45.34 -0.52 -5.49 16 28 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 29 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.13 2.93 6.42 -51.93 -0.33 2.60 16 32 H 0.08 1.75 7.50 -51.93 -0.39 1.36 16 33 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 34 H 0.13 2.32 6.05 -52.48 -0.32 2.01 16 35 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.13 2.29 7.01 -52.49 -0.37 1.92 16 37 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 38 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 39 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 343.25 15.07 5.17 5.17 Total: -1.00 -31.98 343.25 -6.54 -38.51 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -4.23 Total: 8.00 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: -0.97 Total: 14.65 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: 0.20 Total: -31.24 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -1.69 Total: -48.53 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.98 -6.54 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491879341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.021 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds